Wall clock time and date at job start Mon Mar 30 2020 01:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38232 * 119.61769 * 2 1 4 4 C 1.38621 * 119.16255 * 179.97438 * 3 2 1 5 5 C 1.38672 * 118.42360 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.42172 * 179.97438 * 5 4 3 7 7 N 1.46502 * 109.47296 * 89.99894 * 6 5 4 8 8 C 1.38082 * 120.00162 * 180.02562 * 7 6 5 9 9 N 1.32265 * 119.90748 * 0.29085 * 8 7 6 10 10 C 1.31974 * 121.86938 * 180.29339 * 9 8 7 11 11 C 1.38680 * 121.44305 * 359.67179 * 10 9 8 12 12 C 1.38003 * 119.63103 * 0.02585 * 11 10 9 13 13 C 1.41006 * 118.28241 * 359.97438 * 12 11 10 14 14 C 1.41019 * 120.70970 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99595 * 154.82275 * 14 13 12 16 16 C 1.39945 * 119.99711 * 335.10358 * 14 13 12 17 17 N 1.30861 * 120.00246 * 343.31692 * 16 14 13 18 18 Si 1.86800 * 119.99774 * 163.32272 * 16 14 13 19 19 H 1.48502 * 109.47190 * 59.99561 * 18 16 14 20 20 H 1.48503 * 109.47288 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47229 * 299.99763 * 18 16 14 22 22 C 1.38180 * 119.16180 * 0.26517 * 5 4 3 23 23 N 1.31856 * 119.62359 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47192 * 90.00250 * 1 2 3 25 25 H 1.09000 * 109.46505 * 209.99352 * 1 2 3 26 26 H 1.09001 * 109.47216 * 329.99293 * 1 2 3 27 27 H 1.08005 * 120.41195 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.79169 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47193 * 329.99967 * 6 5 4 30 30 H 1.08999 * 109.47620 * 209.99809 * 6 5 4 31 31 H 0.96999 * 119.99732 * 359.97438 * 7 6 5 32 32 H 1.07991 * 119.27772 * 179.69754 * 10 9 8 33 33 H 1.08005 * 120.18490 * 179.97438 * 11 10 9 34 34 H 1.07999 * 120.86568 * 180.02562 * 12 11 10 35 35 H 0.97005 * 120.00428 * 180.02562 * 17 16 14 36 36 H 1.08004 * 119.62201 * 179.70473 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5763 1.1907 0.0005 5 6 4.2267 -0.0341 0.0005 6 6 5.7322 -0.0986 0.0005 7 7 6.2202 -0.1195 1.3817 8 6 7.5765 -0.1770 1.6340 9 7 8.4339 -0.2074 0.6273 10 6 9.7375 -0.2683 0.8239 11 6 10.2759 -0.2968 2.1016 12 6 9.4367 -0.2615 3.1966 13 6 8.0463 -0.1966 2.9709 14 6 7.1422 -0.1589 4.0525 15 1 6.1659 0.2850 3.9249 16 6 7.5122 -0.6913 5.2927 17 7 8.5361 -1.5018 5.3776 18 14 6.5445 -0.2451 6.8269 19 1 5.1311 -0.6695 6.6615 20 1 7.1339 -0.9354 8.0022 21 1 6.5988 1.2240 7.0366 22 6 3.4767 -1.1946 -0.0056 23 7 2.1588 -1.1462 0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3632 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6506 2.1373 0.0004 28 1 4.1365 2.1140 0.0010 29 1 6.1333 0.7751 -0.5133 30 1 6.0572 -1.0033 -0.5133 31 1 5.5904 -0.0921 2.1190 32 1 10.3994 -0.2961 -0.0289 33 1 11.3460 -0.3471 2.2390 34 1 9.8345 -0.2823 4.2004 35 1 8.7924 -1.8711 6.2372 36 1 3.9756 -2.1525 -0.0105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162865924.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:38 Heat of formation + Delta-G solvation = 43.346101 kcal Electronic energy + Delta-G solvation = -19220.311401 eV Core-core repulsion = 16281.944447 eV Total energy + Delta-G solvation = -2938.366954 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30309 -40.26116 -36.79785 -35.83567 -33.98926 -33.25369 -32.30248 -30.97816 -28.93247 -27.23608 -25.84850 -24.43500 -23.37823 -22.57389 -22.07378 -19.15267 -18.46066 -17.65878 -17.29108 -17.03209 -16.60391 -15.90919 -15.59981 -15.38336 -15.04238 -14.91061 -14.49936 -14.14147 -13.87822 -13.66979 -13.65550 -13.24278 -13.20774 -13.12641 -12.99210 -12.67941 -12.44418 -12.19895 -11.64957 -11.14094 -10.81709 -10.76396 -10.40995 -10.05383 -9.88599 -9.72086 -8.66183 -8.33034 -6.16630 0.05171 0.30565 0.93043 1.21609 1.38681 1.48340 1.53462 2.20696 2.60343 2.81856 3.06578 3.35985 3.77157 3.79478 3.84529 4.03059 4.04467 4.33148 4.43046 4.64189 4.66755 4.72590 4.77901 4.81690 4.88047 4.91748 5.03148 5.16449 5.19319 5.22119 5.31561 5.37606 5.76168 5.78680 5.91363 6.09878 6.38784 6.74367 6.79629 6.88793 6.99813 7.13200 7.90476 8.37200 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.015929 B = 0.005470 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.403065 B = 5117.970527 C = 6510.080979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.112 3.888 3 C -0.169 4.169 4 C -0.059 4.059 5 C -0.161 4.161 6 C 0.198 3.802 7 N -0.721 5.721 8 C 0.296 3.704 9 N -0.543 5.543 10 C 0.001 3.999 11 C -0.198 4.198 12 C -0.149 4.149 13 C 0.002 3.998 14 C -0.481 4.481 15 H 0.078 0.922 16 C 0.036 3.964 17 N -0.830 5.830 18 Si 0.977 3.023 19 H -0.261 1.261 20 H -0.271 1.271 21 H -0.261 1.261 22 C 0.108 3.892 23 N -0.512 5.512 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.168 0.832 28 H 0.148 0.852 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.402 0.598 32 H 0.151 0.849 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.286 0.714 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.055 5.015 -6.276 14.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.026 4.026 3 C -0.188 4.188 4 C -0.085 4.085 5 C -0.164 4.164 6 C 0.074 3.926 7 N -0.360 5.360 8 C 0.058 3.942 9 N -0.261 5.261 10 C -0.152 4.152 11 C -0.220 4.220 12 C -0.176 4.176 13 C -0.005 4.005 14 C -0.512 4.512 15 H 0.096 0.904 16 C -0.178 4.178 17 N -0.456 5.456 18 Si 0.798 3.202 19 H -0.186 1.186 20 H -0.196 1.196 21 H -0.186 1.186 22 C -0.048 4.048 23 N -0.222 5.222 24 H 0.109 0.891 25 H 0.089 0.911 26 H 0.116 0.884 27 H 0.186 0.814 28 H 0.166 0.834 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.238 0.762 32 H 0.168 0.832 33 H 0.138 0.862 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.668 4.097 -7.168 15.121 hybrid contribution 0.875 0.523 1.883 2.141 sum -11.793 4.619 -5.285 13.724 Atomic orbital electron populations 1.20802 0.86507 1.04332 1.04101 1.21988 0.98736 0.88312 0.93519 1.22289 0.94248 1.00319 1.01978 1.21805 0.95138 0.97911 0.93648 1.20912 0.96217 0.95109 1.04150 1.19660 0.87691 1.01266 0.84010 1.43808 1.02027 1.83656 1.06541 1.18702 0.85632 1.00841 0.89037 1.66664 1.04314 1.20393 1.34742 1.21942 0.90100 1.07329 0.95874 1.21663 0.99749 1.06629 0.93956 1.21383 0.92899 1.05236 0.98086 1.18261 0.93941 0.96684 0.91658 1.19331 1.01339 1.35519 0.95024 0.90428 1.26619 0.95972 0.92107 1.03131 1.69865 1.25475 1.22305 1.27996 0.85324 0.78959 0.79505 0.76380 1.18582 1.19571 1.18567 1.22747 0.89358 0.98452 0.94291 1.67589 1.09778 1.30797 1.14031 0.89053 0.91096 0.88376 0.81446 0.83380 0.92272 0.92923 0.76175 0.83200 0.86188 0.87242 0.90341 0.82880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.53 10.17 71.24 0.72 -0.80 16 2 C 0.11 2.60 6.78 42.55 0.29 2.89 16 3 C -0.17 -3.47 9.74 22.36 0.22 -3.25 16 4 C -0.06 -1.43 9.86 22.47 0.22 -1.21 16 5 C -0.16 -4.69 5.27 -19.78 -0.10 -4.80 16 6 C 0.20 6.80 5.83 85.63 0.50 7.30 16 7 N -0.72 -30.05 5.60 -347.38 -1.95 -32.00 16 8 C 0.30 14.62 7.52 134.06 1.01 15.63 16 9 N -0.54 -26.05 9.54 -191.46 -1.83 -27.88 16 10 C 0.00 0.03 11.17 84.78 0.95 0.98 16 11 C -0.20 -9.27 10.08 22.32 0.22 -9.04 16 12 C -0.15 -7.91 8.79 22.89 0.20 -7.71 16 13 C 0.00 0.09 5.60 -21.06 -0.12 -0.03 16 14 C -0.48 -24.98 8.51 23.37 0.20 -24.78 16 15 H 0.08 3.80 6.70 -2.91 -0.02 3.78 16 16 C 0.04 1.78 5.18 85.25 0.44 2.22 16 17 N -0.83 -43.18 10.96 21.83 0.24 -42.94 16 18 Si 0.98 37.84 29.59 68.60 2.03 39.87 16 19 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 20 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 21 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 22 C 0.11 3.22 10.86 84.67 0.92 4.14 16 23 N -0.51 -14.82 10.27 -183.88 -1.89 -16.71 16 24 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.10 1.01 8.08 -2.39 -0.02 0.99 16 27 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 28 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 29 H 0.06 2.02 8.10 -2.39 -0.02 2.00 16 30 H 0.05 1.88 8.09 -2.39 -0.02 1.86 16 31 H 0.40 16.66 6.67 -92.71 -0.62 16.04 16 32 H 0.15 5.69 8.06 -2.92 -0.02 5.66 16 33 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 34 H 0.11 6.01 6.26 -2.91 -0.02 5.99 16 35 H 0.29 13.60 8.30 -92.70 -0.77 12.83 16 36 H 0.15 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -62.59 311.40 2.76 -59.83 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: 0.48 Total: 38.30 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 5.67 Total: -18.47 kcal Atomic # 7 Polarization: -114.10 SS G_CDS: -5.42 Total: -119.53 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.87 kcal Total: -62.59 2.76 -59.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162865924.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.176 kcal (2) G-P(sol) polarization free energy of solvation -62.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds