Wall clock time and date at job start Mon Mar 30 2020 01:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38220 * 119.61803 * 2 1 4 4 C 1.38629 * 119.16248 * 180.02562 * 3 2 1 5 5 C 1.38675 * 118.41633 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.41468 * 180.02562 * 5 4 3 7 7 N 1.46502 * 109.47177 * 90.00381 * 6 5 4 8 8 C 1.32212 * 120.00103 * 119.11128 * 7 6 5 9 9 C 1.46918 * 120.83483 * 5.66483 * 8 7 6 10 10 C 1.34372 * 119.37036 * 179.97438 * 9 8 7 11 11 N 1.36419 * 121.21979 * 359.97438 * 10 9 8 12 12 H 0.97006 * 119.08788 * 179.97438 * 11 10 9 13 13 C 1.37769 * 121.82471 * 0.02562 * 11 10 9 14 14 C 1.40178 * 119.74654 * 179.97438 * 13 11 10 15 15 H 1.08001 * 120.00086 * 201.17163 * 14 13 11 16 16 C 1.40349 * 120.00073 * 21.16415 * 14 13 11 17 17 N 1.30589 * 119.99868 * 18.32665 * 16 14 13 18 18 Si 1.86795 * 120.00286 * 198.32570 * 16 14 13 19 19 H 1.48497 * 109.47300 * 59.99814 * 18 16 14 20 20 H 1.48496 * 109.47581 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47152 * 300.00273 * 18 16 14 22 22 C 1.39066 * 120.50706 * 359.67193 * 13 11 10 23 23 C 1.38184 * 119.16547 * 0.02562 * 5 4 3 24 24 N 1.31851 * 119.61346 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47020 * 89.99893 * 1 2 3 26 26 H 1.08993 * 109.47283 * 210.00094 * 1 2 3 27 27 H 1.08999 * 109.47442 * 330.00058 * 1 2 3 28 28 H 1.08008 * 120.42031 * 0.27631 * 3 2 1 29 29 H 1.08003 * 120.79298 * 179.97438 * 4 3 2 30 30 H 1.09003 * 109.47239 * 210.00047 * 6 5 4 31 31 H 1.09000 * 109.47268 * 330.00557 * 6 5 4 32 32 H 1.08004 * 120.31422 * 0.02562 * 9 8 7 33 33 H 1.08005 * 119.38598 * 180.02562 * 10 9 8 34 34 H 0.96999 * 120.00179 * 179.97438 * 17 16 14 35 35 H 1.08004 * 120.62563 * 180.32371 * 22 13 11 36 36 H 1.07995 * 119.61151 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2016 0.0000 4 6 3.5764 1.1906 -0.0005 5 6 4.2266 -0.0343 -0.0005 6 6 5.7322 -0.0988 -0.0005 7 7 6.2201 -0.1198 1.3807 8 6 6.9221 -1.1512 1.8183 9 6 7.3292 -2.2271 0.9044 10 6 8.0427 -3.2614 1.3805 11 7 8.3963 -3.3304 2.6963 12 1 8.9114 -4.0915 3.0068 13 6 8.0413 -2.3497 3.5963 14 6 8.4276 -2.4650 4.9389 15 1 7.8940 -1.9194 5.7031 16 6 9.5077 -3.2896 5.2900 17 7 10.3681 -3.6611 4.3807 18 14 9.7144 -3.8558 7.0581 19 1 8.5194 -4.6343 7.4715 20 1 10.9242 -4.7101 7.1661 21 1 9.8643 -2.6722 7.9425 22 6 7.3080 -1.2431 3.1820 23 6 3.4765 -1.1949 -0.0005 24 7 2.1586 -1.1463 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6507 2.1373 0.0045 29 1 4.1366 2.1139 -0.0010 30 1 6.0571 -1.0036 -0.5143 31 1 6.1333 0.7748 -0.5143 32 1 7.0582 -2.1867 -0.1403 33 1 8.3424 -4.0523 0.7088 34 1 11.1148 -4.2307 4.6234 35 1 7.0332 -0.4706 3.8849 36 1 3.9754 -2.1527 -0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162875140.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:48 Heat of formation + Delta-G solvation = 63.883474 kcal Electronic energy + Delta-G solvation = -18908.196482 eV Core-core repulsion = 15970.720095 eV Total energy + Delta-G solvation = -2937.476387 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.86003 -38.60226 -35.26428 -33.90077 -32.58412 -31.94214 -30.69164 -29.42615 -27.48740 -26.20361 -24.17937 -23.03931 -21.62452 -21.21372 -20.00137 -18.07163 -16.67910 -16.27249 -15.89170 -15.46281 -15.02606 -14.75623 -14.31480 -14.08836 -13.68885 -13.11670 -12.97454 -12.80142 -12.65811 -12.35645 -12.14084 -12.02059 -11.77890 -11.60415 -11.17514 -11.03517 -10.88199 -10.71070 -10.26787 -9.76244 -9.58828 -9.41192 -9.02346 -8.50478 -8.30150 -7.51502 -7.34436 -6.04026 -4.82708 1.48323 1.68131 2.56667 2.69938 2.85015 2.87986 3.13083 3.60870 4.11497 4.24561 4.57462 4.61322 5.00085 5.22225 5.26308 5.43419 5.52152 5.55903 5.63409 5.68591 5.72629 5.90520 6.09839 6.21126 6.23976 6.43397 6.46889 6.56921 6.64339 6.73594 6.79832 6.88620 7.11530 7.34815 7.60155 7.71387 7.93354 8.19584 8.23884 8.34375 8.75462 8.87759 9.63973 9.66833 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.030902 B = 0.003652 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.858698 B = 7665.665802 C = 7971.474575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.101 3.899 3 C -0.174 4.174 4 C -0.066 4.066 5 C -0.102 4.102 6 C 0.097 3.903 7 N -0.668 5.668 8 C 0.286 3.714 9 C -0.306 4.306 10 C 0.129 3.871 11 N -0.602 5.602 12 H 0.414 0.586 13 C 0.331 3.669 14 C -0.465 4.465 15 H 0.104 0.896 16 C 0.077 3.923 17 N -0.811 5.811 18 Si 0.925 3.075 19 H -0.259 1.259 20 H -0.276 1.276 21 H -0.259 1.259 22 C -0.359 4.359 23 C 0.103 3.897 24 N -0.487 5.487 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.118 0.882 33 H 0.132 0.868 34 H 0.294 0.706 35 H 0.113 0.887 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.236 -0.192 -4.946 7.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.037 4.037 3 C -0.194 4.194 4 C -0.092 4.092 5 C -0.105 4.105 6 C -0.034 4.034 7 N -0.395 5.395 8 C 0.125 3.875 9 C -0.336 4.336 10 C -0.001 4.001 11 N -0.213 5.213 12 H 0.254 0.746 13 C 0.222 3.778 14 C -0.498 4.498 15 H 0.122 0.878 16 C -0.142 4.142 17 N -0.439 5.439 18 Si 0.748 3.252 19 H -0.183 1.183 20 H -0.201 1.201 21 H -0.183 1.183 22 C -0.388 4.388 23 C -0.054 4.054 24 N -0.197 5.197 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.136 0.864 33 H 0.149 0.851 34 H 0.105 0.895 35 H 0.131 0.869 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.898 -0.213 -4.817 8.416 hybrid contribution 1.275 -0.428 0.143 1.353 sum -5.622 -0.641 -4.673 7.339 Atomic orbital electron populations 1.20616 0.89485 1.02960 1.02394 1.21131 0.96613 0.88671 0.97295 1.21856 0.94961 0.98791 1.03825 1.21441 0.93797 0.98240 0.95747 1.21242 0.98541 0.93507 0.97175 1.20670 0.88223 0.99442 0.95098 1.73553 1.29064 1.25662 1.11221 1.20264 0.87900 0.86818 0.92511 1.22282 1.11480 0.99722 1.00161 1.21259 0.95218 0.97871 0.85750 1.42110 1.50094 1.23106 1.05991 0.74551 1.17616 0.87266 0.84835 0.88042 1.19515 1.13025 1.24547 0.92663 0.87831 1.26223 0.93478 0.93121 1.01336 1.69320 1.10190 1.27511 1.36843 0.86056 0.78762 0.79770 0.80631 1.18316 1.20060 1.18300 1.20184 1.22712 1.02097 0.93771 1.22546 0.88864 0.98259 0.95763 1.67443 1.10083 1.29345 1.12812 0.91064 0.90883 0.91192 0.85533 0.85242 0.94280 0.92991 0.86429 0.85077 0.89496 0.86914 0.83459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 10.17 36.01 0.37 -0.73 16 2 C 0.10 1.57 6.78 -82.59 -0.56 1.01 16 3 C -0.17 -2.58 9.74 -39.44 -0.38 -2.96 16 4 C -0.07 -1.09 9.86 -39.28 -0.39 -1.48 16 5 C -0.10 -1.91 5.48 -104.48 -0.57 -2.48 16 6 C 0.10 1.94 6.42 -5.19 -0.03 1.91 16 7 N -0.67 -16.10 10.60 -58.41 -0.62 -16.72 16 8 C 0.29 6.98 6.80 -82.74 -0.56 6.41 16 9 C -0.31 -6.41 9.39 -37.43 -0.35 -6.76 16 10 C 0.13 2.49 11.15 -16.88 -0.19 2.30 16 11 N -0.60 -12.95 4.90 -10.83 -0.05 -13.01 16 12 H 0.41 8.49 6.27 -40.82 -0.26 8.23 16 13 C 0.33 8.02 6.38 -84.16 -0.54 7.49 16 14 C -0.46 -10.92 9.02 -38.06 -0.34 -11.27 16 15 H 0.10 2.38 7.92 -52.49 -0.42 1.96 16 16 C 0.08 1.65 5.17 -17.29 -0.09 1.56 16 17 N -0.81 -17.40 11.10 55.57 0.62 -16.78 16 18 Si 0.92 16.16 29.60 -169.99 -5.03 11.13 16 19 H -0.26 -4.53 7.11 56.52 0.40 -4.12 16 20 H -0.28 -4.68 7.11 56.52 0.40 -4.28 16 21 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 22 C -0.36 -9.13 9.83 -37.82 -0.37 -9.51 16 23 C 0.10 1.91 10.86 -17.55 -0.19 1.72 16 24 N -0.49 -8.76 10.27 -9.48 -0.10 -8.86 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 28 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 29 H 0.13 1.95 8.06 -52.48 -0.42 1.53 16 30 H 0.04 0.75 5.17 -51.93 -0.27 0.48 16 31 H 0.05 0.99 8.10 -51.93 -0.42 0.57 16 32 H 0.12 2.20 5.90 -52.48 -0.31 1.89 16 33 H 0.13 1.94 8.06 -52.48 -0.42 1.52 16 34 H 0.29 5.68 8.29 -40.82 -0.34 5.34 16 35 H 0.11 2.95 8.06 -52.48 -0.42 2.53 16 36 H 0.15 2.62 8.06 -52.49 -0.42 2.20 16 LS Contribution 311.13 15.07 4.69 4.69 Total: -1.00 -27.85 311.13 -8.88 -36.74 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -4.18 Total: 15.59 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -4.21 Total: -12.79 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -0.15 Total: -55.37 kcal Atomic # 14 Polarization: 16.16 SS G_CDS: -5.03 Total: 11.13 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.85 -8.88 -36.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162875140.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.619 kcal (2) G-P(sol) polarization free energy of solvation -27.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds