Wall clock time and date at job start Mon Mar 30 2020 01:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38220 * 119.61803 * 2 1 4 4 C 1.38629 * 119.16248 * 180.02562 * 3 2 1 5 5 C 1.38675 * 118.41633 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.41468 * 180.02562 * 5 4 3 7 7 N 1.46502 * 109.47177 * 90.00381 * 6 5 4 8 8 C 1.32212 * 120.00103 * 119.11128 * 7 6 5 9 9 C 1.46918 * 120.83483 * 5.66483 * 8 7 6 10 10 C 1.34372 * 119.37036 * 179.97438 * 9 8 7 11 11 N 1.36419 * 121.21979 * 359.97438 * 10 9 8 12 12 H 0.97006 * 119.08788 * 179.97438 * 11 10 9 13 13 C 1.37769 * 121.82471 * 0.02562 * 11 10 9 14 14 C 1.40178 * 119.74654 * 179.97438 * 13 11 10 15 15 H 1.08001 * 120.00086 * 201.17163 * 14 13 11 16 16 C 1.40349 * 120.00073 * 21.16415 * 14 13 11 17 17 N 1.30589 * 119.99868 * 18.32665 * 16 14 13 18 18 Si 1.86795 * 120.00286 * 198.32570 * 16 14 13 19 19 H 1.48497 * 109.47300 * 59.99814 * 18 16 14 20 20 H 1.48496 * 109.47581 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47152 * 300.00273 * 18 16 14 22 22 C 1.39066 * 120.50706 * 359.67193 * 13 11 10 23 23 C 1.38184 * 119.16547 * 0.02562 * 5 4 3 24 24 N 1.31851 * 119.61346 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47020 * 89.99893 * 1 2 3 26 26 H 1.08993 * 109.47283 * 210.00094 * 1 2 3 27 27 H 1.08999 * 109.47442 * 330.00058 * 1 2 3 28 28 H 1.08008 * 120.42031 * 0.27631 * 3 2 1 29 29 H 1.08003 * 120.79298 * 179.97438 * 4 3 2 30 30 H 1.09003 * 109.47239 * 210.00047 * 6 5 4 31 31 H 1.09000 * 109.47268 * 330.00557 * 6 5 4 32 32 H 1.08004 * 120.31422 * 0.02562 * 9 8 7 33 33 H 1.08005 * 119.38598 * 180.02562 * 10 9 8 34 34 H 0.96999 * 120.00179 * 179.97438 * 17 16 14 35 35 H 1.08004 * 120.62563 * 180.32371 * 22 13 11 36 36 H 1.07995 * 119.61151 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2016 0.0000 4 6 3.5764 1.1906 -0.0005 5 6 4.2266 -0.0343 -0.0005 6 6 5.7322 -0.0988 -0.0005 7 7 6.2201 -0.1198 1.3807 8 6 6.9221 -1.1512 1.8183 9 6 7.3292 -2.2271 0.9044 10 6 8.0427 -3.2614 1.3805 11 7 8.3963 -3.3304 2.6963 12 1 8.9114 -4.0915 3.0068 13 6 8.0413 -2.3497 3.5963 14 6 8.4276 -2.4650 4.9389 15 1 7.8940 -1.9194 5.7031 16 6 9.5077 -3.2896 5.2900 17 7 10.3681 -3.6611 4.3807 18 14 9.7144 -3.8558 7.0581 19 1 8.5194 -4.6343 7.4715 20 1 10.9242 -4.7101 7.1661 21 1 9.8643 -2.6722 7.9425 22 6 7.3080 -1.2431 3.1820 23 6 3.4765 -1.1949 -0.0005 24 7 2.1586 -1.1463 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6507 2.1373 0.0045 29 1 4.1366 2.1139 -0.0010 30 1 6.0571 -1.0036 -0.5143 31 1 6.1333 0.7748 -0.5143 32 1 7.0582 -2.1867 -0.1403 33 1 8.3424 -4.0523 0.7088 34 1 11.1148 -4.2307 4.6234 35 1 7.0332 -0.4706 3.8849 36 1 3.9754 -2.1527 -0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162875140.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:48 Heat of formation + Delta-G solvation = 46.931438 kcal Electronic energy + Delta-G solvation = -18908.931577 eV Core-core repulsion = 15970.720095 eV Total energy + Delta-G solvation = -2938.211482 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.15448 -40.29864 -36.90287 -35.52365 -34.02991 -33.19339 -32.41307 -30.90150 -28.95574 -27.82603 -25.67115 -24.34466 -23.26060 -22.65407 -21.60379 -19.79116 -18.40517 -17.58665 -17.32625 -16.93657 -16.57307 -16.21361 -15.83434 -15.36641 -15.20506 -14.68885 -14.49869 -14.17139 -14.03327 -13.74046 -13.31825 -13.21108 -13.15869 -13.02088 -12.81394 -12.60572 -12.46274 -12.21209 -11.86259 -11.38965 -11.26348 -10.71884 -10.37812 -10.02339 -9.85155 -9.19158 -9.00527 -7.78058 -6.67042 0.19169 0.37288 0.93731 1.07672 1.41067 1.52177 1.62612 2.14688 2.52937 2.83209 2.91759 3.41334 3.49322 3.85640 4.01872 4.08087 4.11210 4.18407 4.37220 4.58020 4.63396 4.72861 4.79721 4.82768 4.89389 4.94489 4.99114 5.03609 5.17146 5.20219 5.24792 5.49328 5.62838 5.77953 5.85568 5.97074 6.07498 6.43274 6.48410 6.98764 7.04880 7.17766 7.92202 8.00334 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.030902 B = 0.003652 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.858698 B = 7665.665802 C = 7971.474575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.094 3.906 3 C -0.167 4.167 4 C -0.075 4.075 5 C -0.125 4.125 6 C 0.101 3.899 7 N -0.701 5.701 8 C 0.268 3.732 9 C -0.322 4.322 10 C 0.140 3.860 11 N -0.603 5.603 12 H 0.418 0.582 13 C 0.322 3.678 14 C -0.494 4.494 15 H 0.095 0.905 16 C 0.051 3.949 17 N -0.819 5.819 18 Si 0.995 3.005 19 H -0.257 1.257 20 H -0.259 1.259 21 H -0.264 1.264 22 C -0.405 4.405 23 C 0.087 3.913 24 N -0.508 5.508 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.167 0.833 29 H 0.141 0.859 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.139 0.861 33 H 0.186 0.814 34 H 0.308 0.692 35 H 0.083 0.917 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.586 -1.042 -5.171 8.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.044 4.044 3 C -0.186 4.186 4 C -0.101 4.101 5 C -0.128 4.128 6 C -0.030 4.030 7 N -0.428 5.428 8 C 0.106 3.894 9 C -0.352 4.352 10 C 0.011 3.989 11 N -0.215 5.215 12 H 0.260 0.740 13 C 0.212 3.788 14 C -0.526 4.526 15 H 0.113 0.887 16 C -0.167 4.167 17 N -0.445 5.445 18 Si 0.815 3.185 19 H -0.181 1.181 20 H -0.183 1.183 21 H -0.188 1.188 22 C -0.434 4.434 23 C -0.070 4.070 24 N -0.218 5.218 25 H 0.109 0.891 26 H 0.088 0.912 27 H 0.115 0.885 28 H 0.184 0.816 29 H 0.159 0.841 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.156 0.844 33 H 0.203 0.797 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.241 -1.066 -5.080 8.909 hybrid contribution 1.370 -0.122 0.204 1.391 sum -5.871 -1.188 -4.876 7.724 Atomic orbital electron populations 1.20741 0.86265 1.04129 1.04004 1.21942 0.98778 0.88261 0.95469 1.22267 0.94178 1.00288 1.01882 1.21713 0.95098 0.97905 0.95414 1.21161 0.97654 0.94636 0.99346 1.20641 0.89395 0.99791 0.93195 1.73405 1.29179 1.26376 1.13849 1.20430 0.88124 0.88137 0.92673 1.22377 1.12605 0.99532 1.00659 1.21959 0.93274 0.98408 0.85292 1.42121 1.50219 1.22515 1.06615 0.73993 1.17706 0.87037 0.85049 0.88980 1.19728 1.14330 1.26031 0.92510 0.88693 1.26936 0.92278 0.92150 1.05384 1.69295 1.10148 1.26548 1.38545 0.85019 0.79201 0.79104 0.75216 1.18130 1.18260 1.18796 1.20119 1.25937 1.02908 0.94464 1.22529 0.89508 0.98175 0.96767 1.67488 1.09687 1.30907 1.13760 0.89073 0.91248 0.88513 0.81551 0.84113 0.93736 0.92599 0.84400 0.79734 0.88013 0.89841 0.83967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.85 10.17 71.24 0.72 -1.13 16 2 C 0.09 2.75 6.78 42.55 0.29 3.04 16 3 C -0.17 -4.56 9.74 22.36 0.22 -4.35 16 4 C -0.07 -2.45 9.86 22.47 0.22 -2.23 16 5 C -0.13 -4.77 5.48 -19.77 -0.11 -4.88 16 6 C 0.10 4.15 6.42 85.63 0.55 4.70 16 7 N -0.70 -35.35 10.60 -338.70 -3.59 -38.95 16 8 C 0.27 13.66 6.80 42.30 0.29 13.95 16 9 C -0.32 -13.55 9.39 23.66 0.22 -13.33 16 10 C 0.14 5.23 11.15 83.10 0.93 6.15 16 11 N -0.60 -25.86 4.90 -188.19 -0.92 -26.78 16 12 H 0.42 16.75 6.27 -92.70 -0.58 16.17 16 13 C 0.32 16.15 6.38 38.88 0.25 16.40 16 14 C -0.49 -23.89 9.02 23.26 0.21 -23.68 16 15 H 0.10 4.60 7.92 -2.91 -0.02 4.57 16 16 C 0.05 2.15 5.17 85.39 0.44 2.59 16 17 N -0.82 -33.99 11.10 21.89 0.24 -33.75 16 18 Si 0.99 32.03 29.60 68.60 2.03 34.06 16 19 H -0.26 -8.21 7.11 99.48 0.71 -7.50 16 20 H -0.26 -7.61 7.11 99.48 0.71 -6.90 16 21 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 22 C -0.41 -22.01 9.83 23.41 0.23 -21.77 16 23 C 0.09 3.30 10.86 84.67 0.92 4.22 16 24 N -0.51 -18.17 10.27 -183.89 -1.89 -20.06 16 25 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.10 1.40 8.08 -2.39 -0.02 1.38 16 28 H 0.17 3.15 8.06 -2.91 -0.02 3.12 16 29 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 30 H 0.04 1.74 5.17 -2.39 -0.01 1.73 16 31 H 0.06 2.19 8.10 -2.39 -0.02 2.18 16 32 H 0.14 5.11 5.90 -2.91 -0.02 5.09 16 33 H 0.19 4.82 8.06 -2.91 -0.02 4.79 16 34 H 0.31 11.19 8.29 -92.71 -0.77 10.42 16 35 H 0.08 4.81 8.06 -2.91 -0.02 4.79 16 36 H 0.14 5.30 8.06 -2.91 -0.02 5.28 16 Total: -1.00 -63.41 311.13 1.77 -61.63 By element: Atomic # 1 Polarization: 43.64 SS G_CDS: 0.52 Total: 44.16 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 5.38 Total: -20.32 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -6.16 Total: -119.53 kcal Atomic # 14 Polarization: 32.03 SS G_CDS: 2.03 Total: 34.06 kcal Total: -63.41 1.77 -61.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162875140.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.566 kcal (2) G-P(sol) polarization free energy of solvation -63.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds