Wall clock time and date at job start Mon Mar 30 2020 01:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31536 * 1 3 3 Si 1.86803 * 119.99686 * 2 1 4 4 H 1.48507 * 109.46932 * 239.99933 * 3 2 1 5 5 H 1.48502 * 109.47044 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47276 * 119.99832 * 3 2 1 7 7 C 1.38851 * 120.00412 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00130 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99622 * 0.02562 * 7 2 1 10 10 C 1.38520 * 119.99747 * 179.97438 * 9 7 2 11 11 C 1.39704 * 120.53852 * 0.02562 * 10 9 7 12 12 C 1.38138 * 118.32099 * 179.74211 * 11 10 9 13 13 N 1.32560 * 119.19486 * 0.25548 * 12 11 10 14 14 C 1.31795 * 121.02961 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.07600 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47007 * 90.00174 * 15 14 13 17 17 C 1.50707 * 109.47012 * 179.97438 * 16 15 14 18 18 C 1.38229 * 120.00298 * 269.72296 * 17 16 15 19 19 C 1.38230 * 120.00480 * 179.76367 * 18 17 16 20 20 C 1.38235 * 119.99440 * 0.51209 * 19 18 17 21 21 C 1.38238 * 120.00480 * 359.74636 * 20 19 18 22 22 C 1.38235 * 119.99762 * 89.99874 * 17 16 15 23 23 N 1.31737 * 121.84417 * 359.97438 * 14 13 12 24 24 H 0.96994 * 119.99953 * 359.97438 * 1 2 3 25 25 H 0.97002 * 120.00481 * 0.02562 * 9 7 2 26 26 H 1.08002 * 120.84237 * 0.02562 * 11 10 9 27 27 H 1.08001 * 120.40081 * 180.23015 * 12 11 10 28 28 H 1.08999 * 109.47001 * 209.99694 * 15 14 13 29 29 H 1.08999 * 109.47495 * 329.99709 * 15 14 13 30 30 H 1.09004 * 109.47284 * 299.99775 * 16 15 14 31 31 H 1.08996 * 109.47623 * 59.99912 * 16 15 14 32 32 H 1.08007 * 119.99873 * 0.02562 * 18 17 16 33 33 H 1.07996 * 120.00769 * 180.22953 * 19 18 17 34 34 H 1.08005 * 120.00256 * 179.71977 * 20 19 18 35 35 H 1.08000 * 120.00348 * 179.97438 * 21 20 19 36 36 H 1.08005 * 119.99994 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.1031 1.6965 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6966 1.2125 7 6 2.0097 -1.2024 0.0005 8 1 3.0896 -1.2024 0.0001 9 7 1.3251 -2.3883 0.0005 10 6 2.0177 -3.5879 0.0005 11 6 3.4147 -3.6009 0.0011 12 6 4.0587 -4.8230 0.0065 13 7 3.3363 -5.9345 0.0059 14 6 2.0192 -5.8888 0.0006 15 6 1.2415 -7.1796 0.0007 16 6 0.9727 -7.6129 1.4432 17 6 0.1945 -8.9035 1.4433 18 6 -1.1876 -8.8773 1.4437 19 6 -1.9014 -10.0610 1.4389 20 6 -1.2331 -11.2711 1.4442 21 6 0.1490 -11.2974 1.4491 22 6 0.8628 -10.1136 1.4486 23 7 1.3634 -4.7462 -0.0037 24 1 -0.4850 0.8400 0.0004 25 1 0.3550 -2.3884 -0.0002 26 1 3.9771 -2.6789 0.0019 27 1 5.1375 -4.8723 0.0109 28 1 0.2937 -7.0328 -0.5171 29 1 1.8183 -7.9513 -0.5091 30 1 1.9205 -7.7598 1.9611 31 1 0.3959 -6.8413 1.9530 32 1 -1.7097 -7.9318 1.4436 33 1 -2.9812 -10.0406 1.4355 34 1 -1.7907 -12.1960 1.4450 35 1 0.6712 -12.2428 1.4537 36 1 1.9426 -10.1341 1.4531 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182216.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:48 Heat of formation + Delta-G solvation = 58.800634 kcal Electronic energy + Delta-G solvation = -18667.543499 eV Core-core repulsion = 15729.846704 eV Total energy + Delta-G solvation = -2937.696795 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.79688 -39.16285 -35.96091 -34.24738 -32.60213 -31.66454 -30.86173 -30.05667 -28.24823 -25.31704 -24.38934 -22.59313 -22.48458 -21.27770 -20.50216 -18.13745 -16.89772 -16.69116 -16.10896 -15.21133 -15.15144 -14.74286 -14.21888 -14.01596 -13.78900 -13.59185 -13.43575 -12.98479 -12.92554 -12.77959 -12.11077 -11.88797 -11.76345 -11.42778 -11.13954 -10.95037 -10.81037 -10.73516 -10.56988 -10.51163 -9.48228 -9.38653 -8.90293 -8.84267 -8.57831 -8.06241 -7.41374 -6.76461 -4.02136 1.37099 1.41985 2.15821 2.47068 3.06425 3.08538 3.09049 3.80575 3.86672 4.58295 4.65108 4.84393 4.89267 4.98809 5.09389 5.13182 5.21681 5.35916 5.48156 5.55375 5.66933 5.72378 5.87485 6.01659 6.09964 6.14514 6.27822 6.39890 6.41158 6.49266 6.51529 6.62275 6.74120 6.83858 7.03817 7.11585 7.42465 7.71109 8.13217 8.58207 9.07592 9.18798 9.59807 10.39162 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.032969 B = 0.003373 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.070270 B = 8299.568585 C = 9030.833867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.028 3.972 3 Si 0.938 3.062 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.308 4.308 8 H 0.106 0.894 9 N -0.513 5.513 10 C 0.377 3.623 11 C -0.310 4.310 12 C 0.158 3.842 13 N -0.611 5.611 14 C 0.351 3.649 15 C -0.034 4.034 16 C -0.072 4.072 17 C -0.072 4.072 18 C -0.115 4.115 19 C -0.121 4.121 20 C -0.131 4.131 21 C -0.122 4.122 22 C -0.116 4.116 23 N -0.603 5.603 24 H 0.280 0.720 25 H 0.405 0.595 26 H 0.128 0.872 27 H 0.142 0.858 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.020 -14.319 2.353 14.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.178 4.178 3 Si 0.764 3.236 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.439 4.439 8 H 0.124 0.876 9 N -0.120 5.120 10 C 0.127 3.873 11 C -0.342 4.342 12 C 0.001 3.999 13 N -0.338 5.338 14 C 0.079 3.921 15 C -0.073 4.073 16 C -0.110 4.110 17 C -0.072 4.072 18 C -0.133 4.133 19 C -0.139 4.139 20 C -0.149 4.149 21 C -0.140 4.140 22 C -0.134 4.134 23 N -0.332 5.332 24 H 0.090 0.910 25 H 0.241 0.759 26 H 0.146 0.854 27 H 0.160 0.840 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.633 -14.585 2.343 14.785 hybrid contribution 0.417 1.802 -0.024 1.850 sum -0.216 -12.782 2.319 12.993 Atomic orbital electron populations 1.69676 1.06169 1.29257 1.46295 1.25411 0.95791 1.00210 0.96363 0.85791 0.78862 0.79636 0.79333 1.19447 1.20474 1.19440 1.19742 0.93181 0.81989 1.49021 0.87614 1.40792 1.08910 1.01158 1.61141 1.18359 0.88784 0.86069 0.94044 1.21776 0.94562 0.99711 1.18186 1.22398 0.98967 0.87726 0.90852 1.68034 1.07343 1.31682 1.26709 1.22223 0.87485 0.92087 0.90310 1.20124 0.99061 0.91615 0.96518 1.20521 0.99896 0.93642 0.96965 1.19983 0.93840 0.95080 0.98279 1.21161 0.93737 0.98443 0.99998 1.21134 0.99745 0.92594 1.00411 1.21100 0.94582 0.97760 1.01484 1.21119 0.94271 0.98002 1.00598 1.21122 1.00068 0.91927 1.00308 1.67561 1.41264 0.97459 1.26940 0.90993 0.75886 0.85436 0.84035 0.90137 0.90074 0.90637 0.90585 0.85814 0.86301 0.86523 0.86353 0.85905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.89 13.05 55.49 0.72 -22.16 16 2 C 0.03 0.70 5.50 -17.45 -0.10 0.61 16 3 Si 0.94 19.03 29.55 -169.99 -5.02 14.01 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 7 C -0.31 -7.76 9.56 -15.05 -0.14 -7.91 16 8 H 0.11 2.51 5.73 -52.49 -0.30 2.21 16 9 N -0.51 -12.96 5.43 -10.98 -0.06 -13.02 16 10 C 0.38 9.02 7.68 -154.73 -1.19 7.84 16 11 C -0.31 -6.75 9.40 -39.07 -0.37 -7.11 16 12 C 0.16 3.10 11.29 -17.27 -0.20 2.90 16 13 N -0.61 -12.45 10.33 -10.80 -0.11 -12.56 16 14 C 0.35 7.16 6.90 -157.24 -1.08 6.08 16 15 C -0.03 -0.55 5.63 -27.89 -0.16 -0.70 16 16 C -0.07 -1.03 5.33 -27.88 -0.15 -1.18 16 17 C -0.07 -0.92 5.13 -104.62 -0.54 -1.46 16 18 C -0.12 -1.41 9.70 -39.59 -0.38 -1.79 16 19 C -0.12 -1.30 10.05 -39.59 -0.40 -1.70 16 20 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 21 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 22 C -0.12 -1.36 9.70 -39.58 -0.38 -1.74 16 23 N -0.60 -13.80 10.37 -9.94 -0.10 -13.90 16 24 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 25 H 0.41 10.59 8.02 -40.82 -0.33 10.26 16 26 H 0.13 2.65 6.07 -52.49 -0.32 2.33 16 27 H 0.14 2.24 8.06 -52.49 -0.42 1.82 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 31 H 0.08 1.17 8.08 -51.93 -0.42 0.75 16 32 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 314.94 15.07 4.75 4.75 Total: -1.00 -27.90 314.94 -10.01 -37.91 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -4.30 Total: 14.55 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -5.88 Total: -9.56 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: 0.45 Total: -61.65 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.90 -10.01 -37.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182216.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.706 kcal (2) G-P(sol) polarization free energy of solvation -27.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds