Wall clock time and date at job start Mon Mar 30 2020 01:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31536 * 1 3 3 Si 1.86803 * 119.99686 * 2 1 4 4 H 1.48507 * 109.46932 * 239.99933 * 3 2 1 5 5 H 1.48502 * 109.47044 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47276 * 119.99832 * 3 2 1 7 7 C 1.38851 * 120.00412 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00130 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99622 * 0.02562 * 7 2 1 10 10 C 1.38520 * 119.99747 * 179.97438 * 9 7 2 11 11 C 1.39704 * 120.53852 * 0.02562 * 10 9 7 12 12 C 1.38138 * 118.32099 * 179.74211 * 11 10 9 13 13 N 1.32560 * 119.19486 * 0.25548 * 12 11 10 14 14 C 1.31795 * 121.02961 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.07600 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47007 * 90.00174 * 15 14 13 17 17 C 1.50707 * 109.47012 * 179.97438 * 16 15 14 18 18 C 1.38229 * 120.00298 * 269.72296 * 17 16 15 19 19 C 1.38230 * 120.00480 * 179.76367 * 18 17 16 20 20 C 1.38235 * 119.99440 * 0.51209 * 19 18 17 21 21 C 1.38238 * 120.00480 * 359.74636 * 20 19 18 22 22 C 1.38235 * 119.99762 * 89.99874 * 17 16 15 23 23 N 1.31737 * 121.84417 * 359.97438 * 14 13 12 24 24 H 0.96994 * 119.99953 * 359.97438 * 1 2 3 25 25 H 0.97002 * 120.00481 * 0.02562 * 9 7 2 26 26 H 1.08002 * 120.84237 * 0.02562 * 11 10 9 27 27 H 1.08001 * 120.40081 * 180.23015 * 12 11 10 28 28 H 1.08999 * 109.47001 * 209.99694 * 15 14 13 29 29 H 1.08999 * 109.47495 * 329.99709 * 15 14 13 30 30 H 1.09004 * 109.47284 * 299.99775 * 16 15 14 31 31 H 1.08996 * 109.47623 * 59.99912 * 16 15 14 32 32 H 1.08007 * 119.99873 * 0.02562 * 18 17 16 33 33 H 1.07996 * 120.00769 * 180.22953 * 19 18 17 34 34 H 1.08005 * 120.00256 * 179.71977 * 20 19 18 35 35 H 1.08000 * 120.00348 * 179.97438 * 21 20 19 36 36 H 1.08005 * 119.99994 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.1031 1.6965 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6966 1.2125 7 6 2.0097 -1.2024 0.0005 8 1 3.0896 -1.2024 0.0001 9 7 1.3251 -2.3883 0.0005 10 6 2.0177 -3.5879 0.0005 11 6 3.4147 -3.6009 0.0011 12 6 4.0587 -4.8230 0.0065 13 7 3.3363 -5.9345 0.0059 14 6 2.0192 -5.8888 0.0006 15 6 1.2415 -7.1796 0.0007 16 6 0.9727 -7.6129 1.4432 17 6 0.1945 -8.9035 1.4433 18 6 -1.1876 -8.8773 1.4437 19 6 -1.9014 -10.0610 1.4389 20 6 -1.2331 -11.2711 1.4442 21 6 0.1490 -11.2974 1.4491 22 6 0.8628 -10.1136 1.4486 23 7 1.3634 -4.7462 -0.0037 24 1 -0.4850 0.8400 0.0004 25 1 0.3550 -2.3884 -0.0002 26 1 3.9771 -2.6789 0.0019 27 1 5.1375 -4.8723 0.0109 28 1 0.2937 -7.0328 -0.5171 29 1 1.8183 -7.9513 -0.5091 30 1 1.9205 -7.7598 1.9611 31 1 0.3959 -6.8413 1.9530 32 1 -1.7097 -7.9318 1.4436 33 1 -2.9812 -10.0406 1.4355 34 1 -1.7907 -12.1960 1.4450 35 1 0.6712 -12.2428 1.4537 36 1 1.9426 -10.1341 1.4531 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182216.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:48 Heat of formation + Delta-G solvation = 45.183913 kcal Electronic energy + Delta-G solvation = -18668.133965 eV Core-core repulsion = 15729.846704 eV Total energy + Delta-G solvation = -2938.287260 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.46691 -40.09197 -37.71490 -35.50565 -34.39523 -33.22152 -31.70229 -31.58505 -29.61201 -27.12055 -25.72796 -24.19246 -23.37801 -22.69585 -21.67673 -19.96481 -18.56873 -17.81646 -17.58010 -16.53063 -16.15284 -16.12691 -15.85944 -15.58549 -15.42564 -15.05716 -14.41255 -14.19025 -14.07924 -14.02382 -13.53881 -13.35295 -13.30849 -12.81984 -12.59402 -12.42596 -12.16576 -12.11081 -11.83692 -11.65937 -11.17360 -11.14560 -10.52112 -9.79711 -9.75324 -9.55937 -9.21163 -8.60141 -5.94411 0.39804 0.56821 0.57922 0.74110 1.41249 1.50847 1.53279 2.18704 2.83954 2.90649 2.96949 3.36959 3.41361 3.78843 3.99317 4.03599 4.23999 4.32019 4.37209 4.42050 4.44652 4.61309 4.67565 4.71035 4.74357 4.97062 5.00076 5.13516 5.14233 5.24992 5.25771 5.28504 5.64317 5.65744 5.68673 5.81674 5.99033 6.19558 6.36765 6.72594 7.25419 7.34901 7.81892 8.57477 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.032969 B = 0.003373 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.070270 B = 8299.568585 C = 9030.833867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.019 4.019 3 Si 1.008 2.992 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.329 4.329 8 H 0.115 0.885 9 N -0.537 5.537 10 C 0.364 3.636 11 C -0.327 4.327 12 C 0.169 3.831 13 N -0.608 5.608 14 C 0.344 3.656 15 C -0.028 4.028 16 C -0.059 4.059 17 C -0.089 4.089 18 C -0.133 4.133 19 C -0.127 4.127 20 C -0.130 4.130 21 C -0.123 4.123 22 C -0.125 4.125 23 N -0.624 5.624 24 H 0.281 0.719 25 H 0.393 0.607 26 H 0.135 0.865 27 H 0.188 0.812 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.118 0.882 33 H 0.138 0.862 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.334 -16.162 2.419 16.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.221 4.221 3 Si 0.830 3.170 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.459 4.459 8 H 0.132 0.868 9 N -0.145 5.145 10 C 0.117 3.883 11 C -0.358 4.358 12 C 0.010 3.990 13 N -0.333 5.333 14 C 0.073 3.927 15 C -0.067 4.067 16 C -0.097 4.097 17 C -0.089 4.089 18 C -0.151 4.151 19 C -0.145 4.145 20 C -0.148 4.148 21 C -0.141 4.141 22 C -0.143 4.143 23 N -0.354 5.354 24 H 0.090 0.910 25 H 0.227 0.773 26 H 0.153 0.847 27 H 0.204 0.796 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.137 0.863 33 H 0.156 0.844 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.748 -16.479 2.410 16.671 hybrid contribution 0.027 2.087 -0.040 2.088 sum 0.775 -14.392 2.370 14.606 Atomic orbital electron populations 1.69792 1.07729 1.29990 1.48194 1.26379 0.96548 1.03382 0.95768 0.84753 0.77524 0.75085 0.79672 1.18611 1.20441 1.18592 1.20100 0.93723 0.82400 1.49671 0.86755 1.40851 1.08307 1.01801 1.63524 1.18832 0.89970 0.86144 0.93397 1.21984 0.93674 1.01123 1.19043 1.23102 1.00979 0.86532 0.88354 1.68190 1.07255 1.31936 1.25896 1.23042 0.88074 0.92725 0.88855 1.20213 0.98608 0.89953 0.97963 1.20331 0.99806 0.94225 0.95373 1.19864 0.94027 0.94677 1.00305 1.21267 0.93798 0.99123 1.00889 1.21411 1.00851 0.92341 0.99851 1.21486 0.94821 0.98534 0.99951 1.21461 0.94620 0.98554 0.99483 1.21297 1.00731 0.91927 1.00296 1.67639 1.42117 0.97976 1.27675 0.90991 0.77280 0.84681 0.79562 0.90295 0.88532 0.90769 0.92382 0.86346 0.84431 0.83795 0.83778 0.85015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.55 13.05 21.65 0.28 -49.27 16 2 C -0.02 -0.97 5.50 84.88 0.47 -0.51 16 3 Si 1.01 39.16 29.55 68.60 2.03 41.19 16 4 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 5 H -0.28 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 7 C -0.33 -16.92 9.56 84.04 0.80 -16.12 16 8 H 0.11 5.47 5.73 -2.92 -0.02 5.46 16 9 N -0.54 -28.13 5.43 -188.67 -1.02 -29.16 16 10 C 0.36 17.76 7.68 133.17 1.02 18.78 16 11 C -0.33 -13.99 9.40 22.60 0.21 -13.78 16 12 C 0.17 6.24 11.29 84.56 0.95 7.19 16 13 N -0.61 -23.66 10.33 -188.09 -1.94 -25.61 16 14 C 0.34 13.88 6.90 138.77 0.96 14.84 16 15 C -0.03 -0.90 5.63 29.85 0.17 -0.73 16 16 C -0.06 -1.69 5.33 29.85 0.16 -1.53 16 17 C -0.09 -2.22 5.13 -19.86 -0.10 -2.32 16 18 C -0.13 -3.19 9.70 22.27 0.22 -2.98 16 19 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 20 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 21 C -0.12 -2.21 10.05 22.27 0.22 -1.99 16 22 C -0.12 -2.68 9.70 22.27 0.22 -2.46 16 23 N -0.62 -29.07 10.37 -185.37 -1.92 -30.99 16 24 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 25 H 0.39 21.71 8.02 -92.71 -0.74 20.97 16 26 H 0.14 5.50 6.07 -2.91 -0.02 5.48 16 27 H 0.19 5.14 8.06 -2.91 -0.02 5.12 16 28 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.07 2.11 8.09 -2.38 -0.02 2.09 16 31 H 0.06 1.84 8.08 -2.39 -0.02 1.82 16 32 H 0.12 2.85 8.06 -2.91 -0.02 2.83 16 33 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 34 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 35 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -60.86 314.94 3.52 -57.34 By element: Atomic # 1 Polarization: 42.05 SS G_CDS: 0.35 Total: 42.41 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 5.75 Total: -5.91 kcal Atomic # 7 Polarization: -130.41 SS G_CDS: -4.61 Total: -135.02 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -60.86 3.52 -57.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182216.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.523 kcal (2) G-P(sol) polarization free energy of solvation -60.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds