Wall clock time and date at job start Mon Mar 30 2020 00:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35836 * 116.99859 * 2 1 4 4 C 1.38328 * 120.07507 * 359.97438 * 3 2 1 5 5 C 1.39069 * 119.97897 * 179.97438 * 4 3 2 6 6 N 1.39108 * 119.93745 * 179.97438 * 5 4 3 7 7 C 1.36845 * 119.99914 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99437 * 359.97438 * 7 6 5 9 9 C 1.38777 * 119.99877 * 180.02562 * 7 6 5 10 10 N 1.31594 * 120.00131 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99756 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47346 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47496 * 119.99903 * 11 9 7 14 14 H 1.48504 * 109.46982 * 239.99648 * 11 9 7 15 15 C 1.39285 * 120.12425 * 359.97438 * 5 4 3 16 16 C 1.37755 * 120.14609 * 359.97438 * 15 5 4 17 17 C 1.39450 * 120.02223 * 359.79464 * 16 15 5 18 18 C 1.48230 * 120.06327 * 180.25333 * 17 16 15 19 19 C 1.39423 * 120.13144 * 129.92488 * 18 17 16 20 20 C 1.37989 * 119.87025 * 179.81317 * 19 18 17 21 21 C 1.38337 * 120.12984 * 0.44081 * 20 19 18 22 22 C 1.38338 * 120.25981 * 359.79420 * 21 20 19 23 23 C 1.37994 * 120.13297 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.47103 * 60.00723 * 1 2 3 25 25 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47187 * 300.00282 * 1 2 3 27 27 H 1.08002 * 120.01253 * 359.95991 * 4 3 2 28 28 H 0.97000 * 120.00487 * 359.97438 * 6 5 4 29 29 H 0.97003 * 119.99739 * 180.02562 * 10 9 7 30 30 H 1.08001 * 119.92784 * 180.02562 * 15 5 4 31 31 H 1.08000 * 119.99024 * 180.02562 * 16 15 5 32 32 H 1.07999 * 120.06337 * 0.02594 * 19 18 17 33 33 H 1.08000 * 119.93928 * 180.21182 * 20 19 18 34 34 H 1.07999 * 119.87374 * 179.76522 * 21 20 19 35 35 H 1.07999 * 119.93768 * 179.97438 * 22 21 20 36 36 H 1.08000 * 120.07051 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2938 2.3714 -0.0005 5 6 1.9272 3.6095 0.0000 6 7 1.1702 4.7766 -0.0011 7 6 1.7922 5.9955 0.0000 8 1 2.8707 6.0513 0.0021 9 6 1.0370 7.1598 -0.0006 10 7 -0.2772 7.0917 -0.0026 11 14 1.8861 8.8237 0.0002 12 1 3.3582 8.6283 0.0019 13 1 1.4885 9.5829 -1.2126 14 1 1.4865 9.5828 1.2124 15 6 3.3181 3.6831 0.0016 16 6 4.0719 2.5301 0.0032 17 6 3.4431 1.2854 0.0076 18 6 4.2534 0.0442 0.0150 19 6 3.9859 -0.9607 0.9437 20 6 4.7410 -2.1156 0.9433 21 6 5.7677 -2.2737 0.0297 22 6 6.0409 -1.2780 -0.8911 23 6 5.2895 -0.1207 -0.9034 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2152 2.3165 -0.0016 28 1 0.2015 4.7264 -0.0026 29 1 -0.8050 7.9056 -0.0033 30 1 3.8067 4.6463 0.0025 31 1 5.1503 2.5901 0.0049 32 1 3.1870 -0.8368 1.6599 33 1 4.5326 -2.8962 1.6600 34 1 6.3585 -3.1777 0.0355 35 1 6.8439 -1.4067 -1.6018 36 1 5.5034 0.6558 -1.6229 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163186906.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:36 Heat of formation + Delta-G solvation = 9.523607 kcal Electronic energy + Delta-G solvation = -19314.960920 eV Core-core repulsion = 16342.834562 eV Total energy + Delta-G solvation = -2972.126358 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.61951 -38.26904 -37.22728 -34.83058 -32.37866 -30.65866 -30.52648 -29.31180 -27.81918 -26.31996 -24.76604 -22.40846 -22.03690 -21.12798 -20.20764 -17.92921 -17.46652 -16.50566 -15.56727 -15.32922 -15.20601 -15.12832 -14.33295 -14.17053 -13.90538 -13.73672 -13.06182 -12.93372 -12.70410 -12.38354 -12.13974 -11.92314 -11.54476 -11.42025 -11.19506 -10.98547 -10.95180 -10.69382 -10.47940 -10.16521 -10.00583 -9.84486 -8.91600 -8.54656 -8.23791 -7.65544 -6.69310 -6.61520 -3.86594 1.62963 1.81295 2.43128 2.58378 3.09896 3.11085 3.15035 3.85677 3.96566 4.22057 4.61044 5.09910 5.11474 5.26934 5.33078 5.35085 5.45341 5.52742 5.56571 5.70675 5.81545 5.89603 5.96691 6.19924 6.30510 6.37565 6.41685 6.48555 6.70210 6.86179 6.90596 7.02423 7.11273 7.25357 7.36034 7.43099 7.52784 7.59509 7.72516 8.20788 8.63327 9.21255 9.40234 10.47016 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028296 B = 0.004345 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.286370 B = 6443.339177 C = 7257.899092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.318 6.318 3 C 0.198 3.802 4 C -0.331 4.331 5 C 0.240 3.760 6 N -0.548 5.548 7 C -0.303 4.303 8 H 0.106 0.894 9 C 0.021 3.979 10 N -0.889 5.889 11 Si 0.933 3.067 12 H -0.266 1.266 13 H -0.279 1.279 14 H -0.279 1.279 15 C -0.245 4.245 16 C -0.014 4.014 17 C -0.223 4.223 18 C 0.017 3.983 19 C -0.109 4.109 20 C -0.122 4.122 21 C -0.146 4.146 22 C -0.122 4.122 23 C -0.127 4.127 24 H 0.051 0.949 25 H 0.088 0.912 26 H 0.051 0.949 27 H 0.111 0.889 28 H 0.399 0.601 29 H 0.276 0.724 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.232 -11.830 0.101 12.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C 0.152 3.848 4 C -0.356 4.356 5 C 0.116 3.884 6 N -0.147 5.147 7 C -0.433 4.433 8 H 0.124 0.876 9 C -0.183 4.183 10 N -0.526 5.526 11 Si 0.760 3.240 12 H -0.190 1.190 13 H -0.205 1.205 14 H -0.205 1.205 15 C -0.269 4.269 16 C -0.034 4.034 17 C -0.227 4.227 18 C 0.017 3.983 19 C -0.128 4.128 20 C -0.141 4.141 21 C -0.165 4.165 22 C -0.140 4.140 23 C -0.145 4.145 24 H 0.070 0.930 25 H 0.107 0.893 26 H 0.070 0.930 27 H 0.129 0.871 28 H 0.234 0.766 29 H 0.086 0.914 30 H 0.136 0.864 31 H 0.128 0.872 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.126 -11.493 0.101 12.585 hybrid contribution -0.521 1.050 -0.024 1.173 sum 4.605 -10.443 0.077 11.413 Atomic orbital electron populations 1.22907 0.79700 1.02538 1.01337 1.86025 1.20285 1.28003 1.88807 1.18434 0.90715 0.82775 0.92895 1.20084 0.98326 0.91050 1.26170 1.17575 0.91094 0.85793 0.93983 1.41085 1.07944 1.02544 1.63158 1.19857 0.93761 0.82141 1.47510 0.87617 1.25344 0.95506 1.00364 0.97064 1.69692 1.04483 1.30273 1.48154 0.85731 0.79403 0.80811 0.78071 1.19013 1.20457 1.20461 1.20320 0.92021 0.97924 1.16604 1.20452 0.97874 0.90479 0.94580 1.17280 0.88755 0.92023 1.24678 1.18664 0.93419 0.93091 0.93131 1.21230 0.99365 0.93525 0.98638 1.20989 0.96402 0.97558 0.99105 1.20971 0.99059 0.99097 0.97332 1.20967 0.99735 0.94312 0.99027 1.21273 0.96576 0.97639 0.99019 0.93038 0.89337 0.93017 0.87120 0.76597 0.91420 0.86419 0.87153 0.86452 0.86950 0.87123 0.86898 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.41 16 2 O -0.32 -5.59 8.85 -19.23 -0.17 -5.76 16 3 C 0.20 3.87 6.59 -38.91 -0.26 3.61 16 4 C -0.33 -6.78 8.87 -39.24 -0.35 -7.13 16 5 C 0.24 5.38 6.62 -83.86 -0.55 4.83 16 6 N -0.55 -13.28 5.43 -9.61 -0.05 -13.33 16 7 C -0.30 -7.61 9.55 -15.12 -0.14 -7.75 16 8 H 0.11 2.56 5.66 -52.49 -0.30 2.26 16 9 C 0.02 0.52 5.50 -17.45 -0.10 0.43 16 10 N -0.89 -23.23 13.05 55.49 0.72 -22.51 16 11 Si 0.93 19.40 29.55 -169.99 -5.02 14.38 16 12 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 13 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 14 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 15 C -0.25 -5.20 9.28 -39.37 -0.37 -5.57 16 16 C -0.01 -0.27 9.49 -39.31 -0.37 -0.64 16 17 C -0.22 -4.28 5.49 -104.70 -0.57 -4.86 16 18 C 0.02 0.30 5.27 -104.90 -0.55 -0.26 16 19 C -0.11 -1.76 8.78 -39.23 -0.34 -2.11 16 20 C -0.12 -1.70 10.03 -39.64 -0.40 -2.10 16 21 C -0.15 -1.92 10.04 -39.51 -0.40 -2.31 16 22 C -0.12 -1.66 10.03 -39.63 -0.40 -2.06 16 23 C -0.13 -1.98 9.51 -39.23 -0.37 -2.35 16 24 H 0.05 0.69 7.66 -51.93 -0.40 0.29 16 25 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.68 7.66 -51.93 -0.40 0.28 16 27 H 0.11 2.11 6.29 -52.49 -0.33 1.78 16 28 H 0.40 9.79 7.89 -40.82 -0.32 9.47 16 29 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.12 2.48 5.93 -52.49 -0.31 2.17 16 31 H 0.11 1.84 8.03 -52.49 -0.42 1.42 16 32 H 0.12 1.89 7.70 -52.49 -0.40 1.49 16 33 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.11 1.16 8.06 -52.49 -0.42 0.73 16 35 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 36 H 0.12 1.73 8.04 -52.49 -0.42 1.31 16 LS Contribution 308.56 15.07 4.65 4.65 Total: -1.00 -27.13 308.56 -8.19 -35.31 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -4.13 Total: 14.11 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -4.18 Total: -26.86 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.67 Total: -35.84 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.17 Total: -5.76 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.13 -8.19 -35.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186906.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.838 kcal (2) G-P(sol) polarization free energy of solvation -27.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds