Wall clock time and date at job start Mon Mar 30 2020 00:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35836 * 116.99859 * 2 1 4 4 C 1.38328 * 120.07507 * 359.97438 * 3 2 1 5 5 C 1.39069 * 119.97897 * 179.97438 * 4 3 2 6 6 N 1.39108 * 119.93745 * 179.97438 * 5 4 3 7 7 C 1.36845 * 119.99914 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99437 * 359.97438 * 7 6 5 9 9 C 1.38777 * 119.99877 * 180.02562 * 7 6 5 10 10 N 1.31594 * 120.00131 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99756 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47346 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47496 * 119.99903 * 11 9 7 14 14 H 1.48504 * 109.46982 * 239.99648 * 11 9 7 15 15 C 1.39285 * 120.12425 * 359.97438 * 5 4 3 16 16 C 1.37755 * 120.14609 * 359.97438 * 15 5 4 17 17 C 1.39450 * 120.02223 * 359.79464 * 16 15 5 18 18 C 1.48230 * 120.06327 * 180.25333 * 17 16 15 19 19 C 1.39423 * 120.13144 * 129.92488 * 18 17 16 20 20 C 1.37989 * 119.87025 * 179.81317 * 19 18 17 21 21 C 1.38337 * 120.12984 * 0.44081 * 20 19 18 22 22 C 1.38338 * 120.25981 * 359.79420 * 21 20 19 23 23 C 1.37994 * 120.13297 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.47103 * 60.00723 * 1 2 3 25 25 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47187 * 300.00282 * 1 2 3 27 27 H 1.08002 * 120.01253 * 359.95991 * 4 3 2 28 28 H 0.97000 * 120.00487 * 359.97438 * 6 5 4 29 29 H 0.97003 * 119.99739 * 180.02562 * 10 9 7 30 30 H 1.08001 * 119.92784 * 180.02562 * 15 5 4 31 31 H 1.08000 * 119.99024 * 180.02562 * 16 15 5 32 32 H 1.07999 * 120.06337 * 0.02594 * 19 18 17 33 33 H 1.08000 * 119.93928 * 180.21182 * 20 19 18 34 34 H 1.07999 * 119.87374 * 179.76522 * 21 20 19 35 35 H 1.07999 * 119.93768 * 179.97438 * 22 21 20 36 36 H 1.08000 * 120.07051 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2938 2.3714 -0.0005 5 6 1.9272 3.6095 0.0000 6 7 1.1702 4.7766 -0.0011 7 6 1.7922 5.9955 0.0000 8 1 2.8707 6.0513 0.0021 9 6 1.0370 7.1598 -0.0006 10 7 -0.2772 7.0917 -0.0026 11 14 1.8861 8.8237 0.0002 12 1 3.3582 8.6283 0.0019 13 1 1.4885 9.5829 -1.2126 14 1 1.4865 9.5828 1.2124 15 6 3.3181 3.6831 0.0016 16 6 4.0719 2.5301 0.0032 17 6 3.4431 1.2854 0.0076 18 6 4.2534 0.0442 0.0150 19 6 3.9859 -0.9607 0.9437 20 6 4.7410 -2.1156 0.9433 21 6 5.7677 -2.2737 0.0297 22 6 6.0409 -1.2780 -0.8911 23 6 5.2895 -0.1207 -0.9034 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2152 2.3165 -0.0016 28 1 0.2015 4.7264 -0.0026 29 1 -0.8050 7.9056 -0.0033 30 1 3.8067 4.6463 0.0025 31 1 5.1503 2.5901 0.0049 32 1 3.1870 -0.8368 1.6599 33 1 4.5326 -2.8962 1.6600 34 1 6.3585 -3.1777 0.0355 35 1 6.8439 -1.4067 -1.6018 36 1 5.5034 0.6558 -1.6229 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163186906.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:36 Heat of formation + Delta-G solvation = -3.764110 kcal Electronic energy + Delta-G solvation = -19315.537119 eV Core-core repulsion = 16342.834562 eV Total energy + Delta-G solvation = -2972.702557 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.08734 -39.47587 -38.80201 -36.44803 -34.03789 -32.10875 -31.67077 -30.88297 -29.18375 -27.70572 -26.50392 -23.76123 -23.32723 -22.58014 -21.63443 -19.64206 -19.01376 -17.78172 -17.07575 -16.86665 -16.60228 -16.43174 -15.89240 -15.50047 -15.40930 -15.09258 -14.40293 -14.19390 -14.06357 -14.00426 -13.61048 -13.33693 -12.98014 -12.96508 -12.66682 -12.43815 -12.39568 -12.06515 -11.87010 -11.69409 -11.52923 -11.40463 -10.58701 -9.67106 -9.56463 -9.25624 -8.50933 -8.25424 -5.75746 0.35747 0.68070 0.81032 1.06757 1.41511 1.48005 1.54762 2.25751 2.52957 2.83044 3.11309 3.37057 3.37816 4.05748 4.15172 4.26160 4.29742 4.38463 4.41412 4.44561 4.55140 4.70027 4.74858 4.78855 4.85787 4.88586 5.12813 5.16971 5.30145 5.33759 5.54519 5.66127 5.69521 5.76550 5.81506 5.89901 6.01023 6.12491 6.30583 6.68086 6.79798 7.45400 7.59112 8.67637 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028296 B = 0.004345 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.286370 B = 6443.339177 C = 7257.899092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.322 6.322 3 C 0.192 3.808 4 C -0.334 4.334 5 C 0.227 3.773 6 N -0.577 5.577 7 C -0.319 4.319 8 H 0.107 0.893 9 C -0.029 4.029 10 N -0.931 5.931 11 Si 0.998 3.002 12 H -0.257 1.257 13 H -0.278 1.278 14 H -0.278 1.278 15 C -0.262 4.262 16 C -0.011 4.011 17 C -0.211 4.211 18 C -0.016 4.016 19 C -0.122 4.122 20 C -0.124 4.124 21 C -0.137 4.137 22 C -0.122 4.122 23 C -0.136 4.136 24 H 0.051 0.949 25 H 0.124 0.876 26 H 0.053 0.947 27 H 0.119 0.881 28 H 0.391 0.609 29 H 0.275 0.725 30 H 0.114 0.886 31 H 0.136 0.864 32 H 0.109 0.891 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.391 -14.571 -0.016 16.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.235 6.235 3 C 0.146 3.854 4 C -0.359 4.359 5 C 0.107 3.893 6 N -0.180 5.180 7 C -0.448 4.448 8 H 0.124 0.876 9 C -0.228 4.228 10 N -0.570 5.570 11 Si 0.821 3.179 12 H -0.181 1.181 13 H -0.204 1.204 14 H -0.204 1.204 15 C -0.286 4.286 16 C -0.030 4.030 17 C -0.216 4.216 18 C -0.016 4.016 19 C -0.140 4.140 20 C -0.142 4.142 21 C -0.155 4.155 22 C -0.140 4.140 23 C -0.154 4.154 24 H 0.070 0.930 25 H 0.142 0.858 26 H 0.072 0.928 27 H 0.137 0.863 28 H 0.224 0.776 29 H 0.084 0.916 30 H 0.131 0.869 31 H 0.154 0.846 32 H 0.127 0.873 33 H 0.157 0.843 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.327 -14.300 -0.016 16.068 hybrid contribution -1.035 1.399 0.013 1.740 sum 6.291 -12.901 -0.003 14.354 Atomic orbital electron populations 1.23215 0.77609 1.04945 1.01461 1.86028 1.22382 1.26700 1.88388 1.18590 0.91203 0.83215 0.92439 1.20281 0.99069 0.90916 1.25648 1.17961 0.91757 0.86073 0.93516 1.41011 1.07427 1.02765 1.66760 1.20088 0.93956 0.82959 1.47836 0.87553 1.26168 0.96068 1.03415 0.97135 1.69796 1.05685 1.30800 1.50749 0.84770 0.78720 0.76602 0.77775 1.18097 1.20371 1.20397 1.20448 0.91829 0.98651 1.17687 1.20728 0.99115 0.89798 0.93392 1.17726 0.89142 0.93175 1.21509 1.18677 0.94755 0.92883 0.95244 1.21270 0.99869 0.94288 0.98562 1.21313 0.95954 0.97199 0.99697 1.21432 0.98310 0.99911 0.95862 1.21333 0.99819 0.93373 0.99465 1.21412 0.96326 0.98834 0.98812 0.93019 0.85828 0.92802 0.86286 0.77550 0.91593 0.86851 0.84596 0.87267 0.84322 0.83717 0.83967 0.86102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.81 113.37 1.11 1.69 16 2 O -0.32 -10.92 8.85 -91.71 -0.81 -11.73 16 3 C 0.19 7.44 6.59 22.71 0.15 7.59 16 4 C -0.33 -13.92 8.87 22.49 0.20 -13.72 16 5 C 0.23 10.51 6.62 38.44 0.25 10.76 16 6 N -0.58 -29.36 5.43 -184.31 -1.00 -30.36 16 7 C -0.32 -16.70 9.55 84.04 0.80 -15.90 16 8 H 0.11 5.35 5.66 -2.91 -0.02 5.33 16 9 C -0.03 -1.51 5.50 84.86 0.47 -1.05 16 10 N -0.93 -50.85 13.05 21.64 0.28 -50.57 16 11 Si 1.00 40.91 29.55 68.60 2.03 42.94 16 12 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 13 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 14 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 15 C -0.26 -11.34 9.28 22.41 0.21 -11.13 16 16 C -0.01 -0.42 9.49 22.45 0.21 -0.21 16 17 C -0.21 -7.95 5.49 -19.91 -0.11 -8.06 16 18 C -0.02 -0.51 5.27 -20.05 -0.11 -0.62 16 19 C -0.12 -3.66 8.78 22.50 0.20 -3.46 16 20 C -0.12 -2.97 10.03 22.23 0.22 -2.74 16 21 C -0.14 -2.94 10.04 22.32 0.22 -2.71 16 22 C -0.12 -2.81 10.03 22.24 0.22 -2.59 16 23 C -0.14 -3.88 9.51 22.50 0.21 -3.66 16 24 H 0.05 1.34 7.66 -2.39 -0.02 1.32 16 25 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 26 H 0.05 1.37 7.66 -2.39 -0.02 1.35 16 27 H 0.12 4.65 6.29 -2.91 -0.02 4.64 16 28 H 0.39 20.41 7.89 -92.71 -0.73 19.68 16 29 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 30 H 0.11 4.93 5.93 -2.91 -0.02 4.91 16 31 H 0.14 4.34 8.03 -2.91 -0.02 4.32 16 32 H 0.11 3.38 7.70 -2.91 -0.02 3.36 16 33 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 34 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 35 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 36 H 0.12 3.28 8.04 -2.91 -0.02 3.26 16 Total: -1.00 -60.14 308.56 5.14 -54.99 By element: Atomic # 1 Polarization: 40.17 SS G_CDS: 0.37 Total: 40.54 kcal Atomic # 6 Polarization: -50.08 SS G_CDS: 4.27 Total: -45.81 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -0.72 Total: -80.93 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -0.81 Total: -11.73 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -60.14 5.14 -54.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186906.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.230 kcal (2) G-P(sol) polarization free energy of solvation -60.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds