Wall clock time and date at job start Mon Mar 30 2020 00:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35352 * 117.00497 * 2 1 4 4 N 1.30547 * 125.44705 * 179.97438 * 3 2 1 5 5 C 1.36335 * 108.38152 * 180.02562 * 4 3 2 6 6 C 1.47372 * 126.40981 * 179.97438 * 5 4 3 7 7 O 1.21620 * 119.99335 * 180.02562 * 6 5 4 8 8 N 1.34775 * 120.00353 * 0.02768 * 6 5 4 9 9 C 1.46500 * 120.00004 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.46894 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47220 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.47692 * 180.02562 * 11 10 9 13 13 C 1.36935 * 120.00349 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00037 * 359.97438 * 13 12 11 15 15 C 1.38808 * 120.00031 * 179.97438 * 13 12 11 16 16 N 1.31618 * 120.00212 * 179.97438 * 15 13 12 17 17 Si 1.86808 * 120.00252 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46861 * 89.99613 * 17 15 13 19 19 H 1.48500 * 109.46957 * 210.00389 * 17 15 13 20 20 H 1.48502 * 109.46490 * 330.00052 * 17 15 13 21 21 C 1.35914 * 107.17453 * 0.02562 * 5 4 3 22 22 O 1.34201 * 125.44521 * 0.02562 * 3 2 1 23 23 H 1.08999 * 109.47047 * 59.99727 * 1 2 3 24 24 H 1.09001 * 109.47187 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46789 * 299.99798 * 1 2 3 26 26 H 0.97005 * 119.99860 * 359.97438 * 8 6 5 27 27 H 1.08996 * 109.46837 * 299.99752 * 9 8 6 28 28 H 1.09002 * 109.46736 * 59.99982 * 9 8 6 29 29 H 1.09002 * 109.47555 * 300.00059 * 10 9 8 30 30 H 1.09008 * 109.47463 * 60.00123 * 10 9 8 31 31 H 1.09002 * 109.47358 * 300.00167 * 11 10 9 32 32 H 1.09007 * 109.47243 * 60.00012 * 11 10 9 33 33 H 0.97006 * 119.99617 * 359.97438 * 12 11 10 34 34 H 0.97002 * 120.00665 * 179.97438 * 16 15 13 35 35 H 1.07995 * 126.45660 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2059 0.0000 4 7 3.3349 1.3976 0.0005 5 6 3.5702 2.7405 0.0009 6 6 4.8894 3.3974 0.0020 7 8 4.9642 4.6113 0.0027 8 7 6.0130 2.6530 0.0022 9 6 7.3243 3.3061 0.0027 10 6 8.4238 2.2422 0.0035 11 6 9.7934 2.9241 0.0034 12 7 10.8463 1.9055 0.0035 13 6 12.1630 2.2817 0.0040 14 1 12.4253 3.3293 0.0039 15 6 13.1605 1.3165 0.0047 16 7 14.4261 1.6780 0.0046 17 14 12.7069 -0.4957 0.0056 18 1 12.5868 -0.9766 -1.3943 19 1 13.7628 -1.2699 0.7062 20 1 11.4104 -0.6810 0.7056 21 6 2.3605 3.3599 0.0012 22 8 1.4229 2.3958 0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 5.9533 1.6848 0.0020 27 1 7.4208 3.9281 -0.8871 28 1 7.4202 3.9278 0.8929 29 1 8.3273 1.6204 0.8935 30 1 8.3282 1.6200 -0.8865 31 1 9.8898 3.5457 -0.8868 32 1 9.8895 3.5465 0.8932 33 1 10.6107 0.9645 0.0040 34 1 15.1233 1.0035 0.0054 35 1 2.1851 4.4255 0.0012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163404356.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:43 Heat of formation + Delta-G solvation = -30.646796 kcal Electronic energy + Delta-G solvation = -19265.542207 eV Core-core repulsion = 15880.824666 eV Total energy + Delta-G solvation = -3384.717541 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.86488 -39.73639 -39.19654 -36.18857 -35.34611 -34.44622 -31.98915 -30.65434 -29.91385 -27.96561 -26.04051 -24.06784 -22.86362 -22.03441 -21.29675 -20.75685 -19.31181 -17.95939 -17.72759 -17.28749 -16.80935 -16.02776 -15.84402 -15.76352 -15.50807 -14.55266 -14.39967 -14.10999 -13.91290 -13.40994 -12.84767 -12.78118 -12.60927 -12.45340 -11.99427 -11.45165 -11.21466 -11.14871 -11.00714 -10.87756 -10.67445 -10.33489 -10.11217 -9.57066 -9.25100 -9.01540 -8.87559 -7.21700 -5.74432 -3.10402 0.72913 1.46868 1.66495 2.29238 2.96585 3.07069 3.39920 3.42653 3.47481 4.11871 4.31831 4.42780 4.48943 4.61467 4.69553 4.86645 4.96335 5.08271 5.23563 5.35655 5.54066 5.56138 5.80695 5.94431 5.98574 6.15498 6.17472 6.33533 6.71737 6.75086 7.03854 7.41527 7.99128 8.01911 8.44433 9.23366 9.95594 10.15188 11.43908 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.030078 B = 0.002895 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.687995 B = 9669.242637 C =10568.878565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.244 6.244 3 C 0.381 3.619 4 N -0.455 5.455 5 C -0.046 4.046 6 C 0.601 3.399 7 O -0.535 6.535 8 N -0.707 5.707 9 C 0.122 3.878 10 C -0.143 4.143 11 C 0.161 3.839 12 N -0.757 5.757 13 C -0.245 4.245 14 H 0.091 0.909 15 C 0.003 3.997 16 N -0.934 5.934 17 Si 0.886 3.114 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.277 1.277 21 C 0.003 3.997 22 O -0.226 6.226 23 H 0.068 0.932 24 H 0.120 0.880 25 H 0.068 0.932 26 H 0.411 0.589 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.031 0.969 32 H 0.030 0.970 33 H 0.361 0.639 34 H 0.259 0.741 35 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.829 -1.197 -0.012 32.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.151 6.151 3 C 0.135 3.865 4 N -0.201 5.201 5 C -0.165 4.165 6 C 0.385 3.615 7 O -0.413 6.413 8 N -0.357 5.357 9 C -0.002 4.002 10 C -0.181 4.181 11 C 0.033 3.967 12 N -0.403 5.403 13 C -0.375 4.375 14 H 0.109 0.891 15 C -0.193 4.193 16 N -0.582 5.582 17 Si 0.717 3.283 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.203 1.203 21 C -0.069 4.069 22 O -0.117 6.117 23 H 0.087 0.913 24 H 0.138 0.862 25 H 0.087 0.913 26 H 0.246 0.754 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.194 0.806 34 H 0.069 0.931 35 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -32.100 -0.917 -0.010 32.113 hybrid contribution -1.005 -1.337 0.010 1.672 sum -33.105 -2.254 0.000 33.182 Atomic orbital electron populations 1.23322 0.74993 1.05778 1.03037 1.86402 1.23742 1.15788 1.89203 1.23371 0.85611 0.79577 0.97941 1.71116 1.09798 1.15700 1.23499 1.21731 0.95974 0.88347 1.10413 1.16624 0.81939 0.85959 0.76930 1.90850 1.86719 1.12643 1.51040 1.45897 1.05613 1.11095 1.73139 1.21435 0.79978 0.95751 1.03006 1.22005 0.94991 0.98249 1.02877 1.20496 0.85245 0.91857 0.99091 1.42695 1.02890 1.03422 1.91281 1.19070 0.80628 0.94772 1.42983 0.89137 1.24690 0.95045 0.97510 1.02048 1.69704 0.98349 1.32589 1.57606 0.86516 0.77333 0.86726 0.77772 1.21060 1.21729 1.20305 1.24989 0.84877 0.93824 1.03208 1.84392 1.39548 1.15873 1.71862 0.91348 0.86202 0.91343 0.75375 0.90758 0.90774 0.91176 0.91167 0.95120 0.95178 0.80645 0.93056 0.74651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 10.73 101.05 1.08 1.16 16 2 O -0.24 -1.97 10.55 -40.98 -0.43 -2.40 16 3 C 0.38 3.75 8.98 52.22 0.47 4.22 16 4 N -0.46 -5.41 11.10 -11.71 -0.13 -5.54 16 5 C -0.05 -0.52 6.99 -82.98 -0.58 -1.10 16 6 C 0.60 7.95 7.81 -12.54 -0.10 7.85 16 7 O -0.54 -8.28 16.89 5.26 0.09 -8.20 16 8 N -0.71 -8.87 5.55 -61.40 -0.34 -9.21 16 9 C 0.12 1.62 5.67 -4.04 -0.02 1.59 16 10 C -0.14 -2.11 5.44 -26.74 -0.15 -2.25 16 11 C 0.16 3.09 6.26 -4.04 -0.03 3.07 16 12 N -0.76 -18.31 5.41 -59.91 -0.32 -18.64 16 13 C -0.24 -7.08 10.47 -15.06 -0.16 -7.23 16 14 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 15 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 16 N -0.93 -29.78 13.97 55.49 0.78 -29.00 16 17 Si 0.89 22.37 27.74 -169.99 -4.71 17.65 16 18 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 20 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 21 C 0.00 0.03 11.93 29.90 0.36 0.39 16 22 O -0.23 -1.87 10.20 -17.74 -0.18 -2.05 16 23 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 24 H 0.12 0.10 8.14 -51.93 -0.42 -0.32 16 25 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 26 H 0.41 4.73 8.20 -40.82 -0.33 4.40 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.01 8.14 -51.92 -0.42 0.58 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.03 0.59 8.14 -51.92 -0.42 0.16 16 33 H 0.36 8.44 5.53 -40.82 -0.23 8.22 16 34 H 0.26 7.84 8.31 -40.82 -0.34 7.51 16 35 H 0.24 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 313.36 15.07 4.72 4.72 Total: -1.00 -35.62 313.36 -4.13 -39.75 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -4.38 Total: 5.24 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 0.78 Total: 7.67 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: -0.02 Total: -62.40 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.52 Total: -12.65 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.71 Total: 17.65 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.62 -4.13 -39.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163404356.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.106 kcal (2) G-P(sol) polarization free energy of solvation -35.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds