Wall clock time and date at job start Mon Mar 30 2020 00:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35352 * 117.00497 * 2 1 4 4 N 1.30547 * 125.44705 * 179.97438 * 3 2 1 5 5 C 1.36335 * 108.38152 * 180.02562 * 4 3 2 6 6 C 1.47372 * 126.40981 * 179.97438 * 5 4 3 7 7 O 1.21620 * 119.99335 * 180.02562 * 6 5 4 8 8 N 1.34775 * 120.00353 * 0.02768 * 6 5 4 9 9 C 1.46500 * 120.00004 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.46894 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47220 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.47692 * 180.02562 * 11 10 9 13 13 C 1.36935 * 120.00349 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00037 * 359.97438 * 13 12 11 15 15 C 1.38808 * 120.00031 * 179.97438 * 13 12 11 16 16 N 1.31618 * 120.00212 * 179.97438 * 15 13 12 17 17 Si 1.86808 * 120.00252 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46861 * 89.99613 * 17 15 13 19 19 H 1.48500 * 109.46957 * 210.00389 * 17 15 13 20 20 H 1.48502 * 109.46490 * 330.00052 * 17 15 13 21 21 C 1.35914 * 107.17453 * 0.02562 * 5 4 3 22 22 O 1.34201 * 125.44521 * 0.02562 * 3 2 1 23 23 H 1.08999 * 109.47047 * 59.99727 * 1 2 3 24 24 H 1.09001 * 109.47187 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46789 * 299.99798 * 1 2 3 26 26 H 0.97005 * 119.99860 * 359.97438 * 8 6 5 27 27 H 1.08996 * 109.46837 * 299.99752 * 9 8 6 28 28 H 1.09002 * 109.46736 * 59.99982 * 9 8 6 29 29 H 1.09002 * 109.47555 * 300.00059 * 10 9 8 30 30 H 1.09008 * 109.47463 * 60.00123 * 10 9 8 31 31 H 1.09002 * 109.47358 * 300.00167 * 11 10 9 32 32 H 1.09007 * 109.47243 * 60.00012 * 11 10 9 33 33 H 0.97006 * 119.99617 * 359.97438 * 12 11 10 34 34 H 0.97002 * 120.00665 * 179.97438 * 16 15 13 35 35 H 1.07995 * 126.45660 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2059 0.0000 4 7 3.3349 1.3976 0.0005 5 6 3.5702 2.7405 0.0009 6 6 4.8894 3.3974 0.0020 7 8 4.9642 4.6113 0.0027 8 7 6.0130 2.6530 0.0022 9 6 7.3243 3.3061 0.0027 10 6 8.4238 2.2422 0.0035 11 6 9.7934 2.9241 0.0034 12 7 10.8463 1.9055 0.0035 13 6 12.1630 2.2817 0.0040 14 1 12.4253 3.3293 0.0039 15 6 13.1605 1.3165 0.0047 16 7 14.4261 1.6780 0.0046 17 14 12.7069 -0.4957 0.0056 18 1 12.5868 -0.9766 -1.3943 19 1 13.7628 -1.2699 0.7062 20 1 11.4104 -0.6810 0.7056 21 6 2.3605 3.3599 0.0012 22 8 1.4229 2.3958 0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 5.9533 1.6848 0.0020 27 1 7.4208 3.9281 -0.8871 28 1 7.4202 3.9278 0.8929 29 1 8.3273 1.6204 0.8935 30 1 8.3282 1.6200 -0.8865 31 1 9.8898 3.5457 -0.8868 32 1 9.8895 3.5465 0.8932 33 1 10.6107 0.9645 0.0040 34 1 15.1233 1.0035 0.0054 35 1 2.1851 4.4255 0.0012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163404356.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:43 Heat of formation + Delta-G solvation = -62.178916 kcal Electronic energy + Delta-G solvation = -19266.909542 eV Core-core repulsion = 15880.824666 eV Total energy + Delta-G solvation = -3386.084876 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.56606 -40.70355 -39.77293 -37.64951 -36.15308 -35.92387 -33.85883 -31.88291 -31.07273 -28.31587 -27.46372 -25.29044 -23.90305 -23.28479 -22.66757 -21.72285 -20.16974 -19.55300 -18.60594 -18.32911 -17.43909 -17.15351 -16.87085 -16.48571 -16.32198 -16.11285 -15.66013 -15.55714 -14.95413 -14.78955 -14.45565 -13.95344 -13.77389 -13.10505 -12.97800 -12.88103 -12.56104 -12.53560 -12.15469 -12.06594 -12.00598 -11.94480 -11.81133 -11.41195 -10.97328 -10.23499 -9.76843 -9.30965 -8.02759 -5.37420 -0.00133 0.85961 0.87827 1.39405 1.43662 1.50965 1.68111 2.05558 2.14890 2.49437 3.28426 3.32227 3.55408 3.73128 4.07911 4.08291 4.20660 4.23191 4.24957 4.27296 4.42058 4.63823 4.65893 4.71399 4.72386 4.88411 5.22037 5.29271 5.33396 5.58223 5.75415 6.20999 6.24984 6.53628 7.01538 7.07652 7.82878 8.02843 9.18658 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.030078 B = 0.002895 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.687995 B = 9669.242637 C =10568.878565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.257 6.257 3 C 0.382 3.618 4 N -0.485 5.485 5 C -0.078 4.078 6 C 0.602 3.398 7 O -0.564 6.564 8 N -0.703 5.703 9 C 0.130 3.870 10 C -0.125 4.125 11 C 0.155 3.845 12 N -0.760 5.760 13 C -0.240 4.240 14 H 0.056 0.944 15 C -0.067 4.067 16 N -0.985 5.985 17 Si 0.961 3.039 18 H -0.277 1.277 19 H -0.295 1.295 20 H -0.248 1.248 21 C 0.032 3.968 22 O -0.215 6.215 23 H 0.077 0.923 24 H 0.145 0.855 25 H 0.077 0.923 26 H 0.416 0.584 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.029 0.971 32 H 0.028 0.972 33 H 0.368 0.632 34 H 0.259 0.741 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.865 -2.576 0.011 35.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.165 6.165 3 C 0.136 3.864 4 N -0.232 5.232 5 C -0.196 4.196 6 C 0.388 3.612 7 O -0.444 6.444 8 N -0.354 5.354 9 C 0.007 3.993 10 C -0.163 4.163 11 C 0.029 3.971 12 N -0.406 5.406 13 C -0.371 4.371 14 H 0.074 0.926 15 C -0.259 4.259 16 N -0.635 5.635 17 Si 0.787 3.213 18 H -0.203 1.203 19 H -0.222 1.222 20 H -0.173 1.173 21 C -0.041 4.041 22 O -0.106 6.106 23 H 0.096 0.904 24 H 0.162 0.838 25 H 0.096 0.904 26 H 0.253 0.747 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.201 0.799 34 H 0.067 0.933 35 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -35.205 -2.306 0.014 35.281 hybrid contribution -0.160 -0.817 -0.001 0.832 sum -35.365 -3.123 0.013 35.503 Atomic orbital electron populations 1.23707 0.72562 1.07756 1.03950 1.86422 1.26188 1.14953 1.88927 1.23442 0.85479 0.80340 0.97186 1.71003 1.11189 1.16090 1.24889 1.21513 0.95870 0.88698 1.13496 1.16824 0.82615 0.85649 0.76090 1.90827 1.87249 1.13746 1.52544 1.45801 1.05214 1.11371 1.72969 1.21234 0.80080 0.95170 1.02860 1.21779 0.92501 0.98259 1.03778 1.20657 0.86423 0.91298 0.98762 1.42693 1.02043 1.04768 1.91109 1.19055 0.83003 0.93348 1.41662 0.92645 1.25600 0.94815 1.03029 1.02427 1.69896 0.99758 1.34318 1.59526 0.85326 0.78026 0.79720 0.78210 1.20259 1.22210 1.17276 1.25600 0.83925 0.94819 0.99772 1.84435 1.39110 1.15528 1.71490 0.90427 0.83754 0.90424 0.74699 0.90972 0.91020 0.90319 0.90200 0.95289 0.95391 0.79875 0.93261 0.71612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 10.73 113.37 1.22 1.27 16 2 O -0.26 -3.70 10.55 -64.21 -0.68 -4.37 16 3 C 0.38 6.90 8.98 130.43 1.17 8.07 16 4 N -0.49 -10.96 11.10 -419.39 -4.65 -15.61 16 5 C -0.08 -1.67 6.99 40.31 0.28 -1.39 16 6 C 0.60 15.32 7.81 86.65 0.68 15.99 16 7 O -0.56 -16.98 16.89 -4.09 -0.07 -17.05 16 8 N -0.70 -16.76 5.55 -466.43 -2.59 -19.35 16 9 C 0.13 3.29 5.67 86.38 0.49 3.78 16 10 C -0.13 -3.44 5.44 30.59 0.17 -3.27 16 11 C 0.16 5.82 6.26 86.38 0.54 6.37 16 12 N -0.76 -35.94 5.41 -343.46 -1.86 -37.80 16 13 C -0.24 -14.02 10.47 84.03 0.88 -13.13 16 14 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 15 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 16 N -0.98 -64.14 13.97 21.65 0.30 -63.84 16 17 Si 0.96 45.75 27.74 68.60 1.90 47.65 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 20 H -0.25 -10.55 6.52 99.48 0.65 -9.90 16 21 C 0.03 0.46 11.93 67.28 0.80 1.27 16 22 O -0.21 -3.06 10.20 18.93 0.19 -2.87 16 23 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 24 H 0.14 -0.15 8.14 -2.39 -0.02 -0.17 16 25 H 0.08 0.19 8.14 -2.38 -0.02 0.17 16 26 H 0.42 8.99 8.20 -92.70 -0.76 8.23 16 27 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.37 16.29 5.53 -92.70 -0.51 15.77 16 34 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 35 H 0.27 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -77.59 313.36 -0.96 -78.55 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -0.20 Total: 19.31 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 6.69 Total: 15.38 kcal Atomic # 7 Polarization: -127.79 SS G_CDS: -8.80 Total: -136.59 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.55 Total: -24.30 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.90 Total: 47.65 kcal Total: -77.59 -0.96 -78.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163404356.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.373 kcal (2) G-P(sol) polarization free energy of solvation -77.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds