Wall clock time and date at job start Mon Mar 30 2020 01:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86808 * 119.99818 * 2 1 4 4 H 1.48498 * 109.47038 * 269.99774 * 3 2 1 5 5 H 1.48497 * 109.46870 * 30.00443 * 3 2 1 6 6 H 1.48499 * 109.46978 * 150.00302 * 3 2 1 7 7 C 1.40028 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00391 * 193.36711 * 7 2 1 9 9 C 1.41552 * 119.99708 * 13.37309 * 7 2 1 10 10 C 1.41184 * 120.99115 * 206.76029 * 9 7 2 11 11 C 1.36559 * 119.14604 * 179.97438 * 10 9 7 12 12 N 1.32096 * 121.26899 * 359.73983 * 11 10 9 13 13 C 1.32532 * 122.21512 * 0.53588 * 12 11 10 14 14 N 1.39085 * 119.65878 * 179.74523 * 13 12 11 15 15 C 1.46950 * 110.99829 * 261.04416 * 14 13 12 16 16 C 1.53361 * 109.78807 * 52.77726 * 15 14 13 17 17 N 1.46810 * 108.20725 * 50.20244 * 16 15 14 18 18 C 1.35724 * 128.03128 * 163.32910 * 17 16 15 19 19 C 1.35063 * 108.16442 * 180.23717 * 18 17 16 20 20 C 1.41109 * 107.48497 * 359.92705 * 19 18 17 21 21 C 1.34112 * 107.32451 * 359.97106 * 20 19 18 22 22 C 1.47352 * 110.99478 * 25.20551 * 14 13 12 23 23 C 1.38743 * 120.68369 * 359.46885 * 13 12 11 24 24 H 0.96996 * 120.00190 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.43022 * 359.95332 * 10 9 7 26 26 H 1.08002 * 119.36576 * 180.02562 * 11 10 9 27 27 H 1.09005 * 109.41371 * 172.87702 * 15 14 13 28 28 H 1.08999 * 109.41878 * 292.74170 * 15 14 13 29 29 H 1.08993 * 109.71559 * 169.87827 * 16 15 14 30 30 H 1.08999 * 109.71243 * 290.48328 * 16 15 14 31 31 H 1.07995 * 125.91895 * 0.19219 * 18 17 16 32 32 H 1.07998 * 126.25873 * 179.97438 * 19 18 17 33 33 H 1.08000 * 126.33291 * 180.23946 * 20 19 18 34 34 H 1.09009 * 109.74803 * 166.45050 * 22 14 13 35 35 H 1.08991 * 109.79940 * 45.73270 * 22 14 13 36 36 H 1.08004 * 120.66483 * 180.23420 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4388 2.6526 0.7001 6 1 3.5389 1.4403 0.7000 7 6 2.0076 -1.2126 -0.0005 8 1 3.0657 -1.2254 0.2157 9 6 1.3286 -2.4218 -0.2846 10 6 1.7940 -3.6537 0.2243 11 6 1.1095 -4.7973 -0.0729 12 7 0.0212 -4.7701 -0.8211 13 6 -0.4585 -3.6443 -1.3299 14 7 -1.6059 -3.6779 -2.1153 15 6 -1.2664 -3.6542 -3.5448 16 6 -0.2576 -4.7661 -3.8574 17 7 -0.7707 -6.0220 -3.2963 18 6 -0.3817 -7.2890 -3.5887 19 6 -1.1218 -8.1390 -2.8444 20 6 -2.0008 -7.3613 -2.0609 21 6 -1.7648 -6.0742 -2.3546 22 6 -2.4374 -4.8488 -1.7853 23 6 0.1689 -2.4318 -1.0826 24 1 -0.4850 0.8400 0.0004 25 1 2.6802 -3.6913 0.8406 26 1 1.4621 -5.7416 0.3149 27 1 -2.1702 -3.8084 -4.1345 28 1 -0.8294 -2.6881 -3.7976 29 1 -0.1426 -4.8655 -4.9367 30 1 0.7050 -4.5269 -3.4055 31 1 0.3859 -7.5691 -4.2948 32 1 -1.0528 -9.2168 -2.8476 33 1 -2.7259 -7.7336 -1.3525 34 1 -3.4275 -4.7335 -2.2265 35 1 -2.5254 -4.9459 -0.7033 36 1 -0.2243 -1.5140 -1.4943 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166602254.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:33 Heat of formation + Delta-G solvation = 101.039657 kcal Electronic energy + Delta-G solvation = -20567.505548 eV Core-core repulsion = 17631.640374 eV Total energy + Delta-G solvation = -2935.865174 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.21013 -38.77306 -36.38119 -34.04249 -32.60023 -30.58706 -29.94827 -28.61167 -27.30761 -26.00667 -24.27316 -22.91973 -21.62226 -20.38961 -19.94012 -18.45975 -17.19582 -16.72540 -15.70841 -15.43661 -15.08243 -14.75586 -14.19058 -13.93940 -13.39965 -13.14526 -12.99942 -12.89709 -12.57180 -12.06715 -11.69205 -11.67605 -11.57983 -11.55735 -11.37913 -11.24336 -10.95812 -10.89614 -10.28232 -10.03604 -9.47555 -8.76336 -8.07081 -8.02923 -8.01381 -7.33632 -7.22237 -6.84565 -4.64376 2.60999 2.77713 2.85001 3.00120 3.03200 3.17882 3.41110 3.58666 3.82856 4.33089 4.56497 4.90579 5.15374 5.26211 5.37867 5.52882 5.55384 5.75184 5.88256 5.95350 5.99945 6.05238 6.11291 6.20525 6.49721 6.72724 6.80726 6.81598 6.88121 7.05086 7.12119 7.28252 7.45763 7.56157 7.61899 7.79480 7.86981 7.93948 8.18797 8.51414 8.69940 8.71413 9.52335 10.06353 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.033634 B = 0.005566 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.300989 B = 5029.428950 C = 5284.278139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.077 3.923 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.131 3.869 10 C -0.274 4.274 11 C 0.112 3.888 12 N -0.578 5.578 13 C 0.263 3.737 14 N -0.473 5.473 15 C 0.052 3.948 16 C 0.077 3.923 17 N -0.430 5.430 18 C -0.021 4.021 19 C -0.206 4.206 20 C -0.207 4.207 21 C 0.044 3.956 22 C 0.133 3.867 23 C -0.188 4.188 24 H 0.283 0.717 25 H 0.099 0.901 26 H 0.116 0.884 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.148 0.852 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.191 -4.760 -6.604 8.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.123 3.877 10 C -0.297 4.297 11 C -0.042 4.042 12 N -0.296 5.296 13 C 0.040 3.960 14 N -0.191 5.191 15 C -0.076 4.076 16 C -0.047 4.047 17 N -0.106 5.106 18 C -0.151 4.151 19 C -0.232 4.232 20 C -0.231 4.231 21 C -0.070 4.070 22 C 0.005 3.995 23 C -0.212 4.212 24 H 0.095 0.905 25 H 0.117 0.883 26 H 0.133 0.867 27 H 0.100 0.900 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.166 0.834 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.986 -4.628 -6.849 8.788 hybrid contribution 1.481 0.766 0.213 1.681 sum -1.506 -3.862 -6.635 7.824 Atomic orbital electron populations 1.69765 1.07523 1.29550 1.34024 1.25950 0.94817 1.01409 0.92123 0.86247 0.80427 0.80325 0.79384 1.19195 1.20122 1.18561 1.19583 0.96718 0.90386 1.42154 0.90130 1.17745 0.90543 0.92275 0.87154 1.21656 1.04882 0.94397 1.08785 1.21350 0.91346 0.96464 0.95082 1.67375 1.15755 1.28922 1.17580 1.19362 0.90278 0.90242 0.96144 1.60208 1.16488 1.39398 1.03018 1.22508 0.98040 0.98032 0.89037 1.22497 0.99730 0.83831 0.98640 1.43809 1.29238 1.05110 1.32483 1.21361 1.04510 0.82938 1.06245 1.20716 1.01741 0.97945 1.02753 1.20165 1.05443 0.91769 1.05752 1.20704 0.94403 0.96578 0.95326 1.20796 0.94395 0.83100 1.01225 1.21717 0.99782 0.96074 1.03651 0.90545 0.88265 0.86653 0.89963 0.88472 0.90087 0.90102 0.83426 0.85751 0.85719 0.90045 0.88844 0.85239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.54 10.92 55.55 0.61 -18.93 16 2 C 0.08 1.84 5.25 -17.35 -0.09 1.75 16 3 Si 0.91 17.87 29.58 -169.99 -5.03 12.84 16 4 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.46 -11.63 9.12 -37.65 -0.34 -11.97 16 8 H 0.08 1.97 7.88 -52.48 -0.41 1.56 16 9 C 0.13 3.38 5.58 -106.56 -0.59 2.79 16 10 C -0.27 -6.58 9.85 -39.07 -0.38 -6.96 16 11 C 0.11 2.59 11.10 -18.04 -0.20 2.39 16 12 N -0.58 -13.37 7.18 -12.82 -0.09 -13.46 16 13 C 0.26 6.01 4.39 -154.97 -0.68 5.33 16 14 N -0.47 -9.26 4.94 -173.85 -0.86 -10.12 16 15 C 0.05 0.83 5.88 -3.61 -0.02 0.81 16 16 C 0.08 1.24 6.33 -3.69 -0.02 1.22 16 17 N -0.43 -7.59 2.82 -112.14 -0.32 -7.90 16 18 C -0.02 -0.34 11.55 -16.96 -0.20 -0.54 16 19 C -0.21 -3.43 10.87 -39.62 -0.43 -3.86 16 20 C -0.21 -3.65 10.81 -39.95 -0.43 -4.09 16 21 C 0.04 0.80 4.99 -81.60 -0.41 0.39 16 22 C 0.13 2.40 5.86 -4.61 -0.03 2.38 16 23 C -0.19 -4.69 8.61 -38.44 -0.33 -5.02 16 24 H 0.28 6.43 8.29 -40.82 -0.34 6.10 16 25 H 0.10 2.23 8.06 -52.48 -0.42 1.80 16 26 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 27 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 28 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.08 1.52 7.42 -51.93 -0.39 1.14 16 31 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 32 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 33 H 0.12 2.00 8.06 -52.49 -0.42 1.57 16 34 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 35 H 0.09 1.82 7.89 -51.93 -0.41 1.41 16 36 H 0.13 3.36 6.29 -52.48 -0.33 3.03 16 LS Contribution 297.53 15.07 4.48 4.48 Total: -1.00 -28.15 297.53 -9.84 -37.99 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -4.47 Total: 10.47 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -4.16 Total: -15.38 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.66 Total: -50.41 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.15 -9.84 -37.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166602254.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.032 kcal (2) G-P(sol) polarization free energy of solvation -28.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds