Wall clock time and date at job start Mon Mar 30 2020 01:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86808 * 119.99818 * 2 1 4 4 H 1.48498 * 109.47038 * 269.99774 * 3 2 1 5 5 H 1.48497 * 109.46870 * 30.00443 * 3 2 1 6 6 H 1.48499 * 109.46978 * 150.00302 * 3 2 1 7 7 C 1.40028 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00391 * 193.36711 * 7 2 1 9 9 C 1.41552 * 119.99708 * 13.37309 * 7 2 1 10 10 C 1.41184 * 120.99115 * 206.76029 * 9 7 2 11 11 C 1.36559 * 119.14604 * 179.97438 * 10 9 7 12 12 N 1.32096 * 121.26899 * 359.73983 * 11 10 9 13 13 C 1.32532 * 122.21512 * 0.53588 * 12 11 10 14 14 N 1.39085 * 119.65878 * 179.74523 * 13 12 11 15 15 C 1.46950 * 110.99829 * 261.04416 * 14 13 12 16 16 C 1.53361 * 109.78807 * 52.77726 * 15 14 13 17 17 N 1.46810 * 108.20725 * 50.20244 * 16 15 14 18 18 C 1.35724 * 128.03128 * 163.32910 * 17 16 15 19 19 C 1.35063 * 108.16442 * 180.23717 * 18 17 16 20 20 C 1.41109 * 107.48497 * 359.92705 * 19 18 17 21 21 C 1.34112 * 107.32451 * 359.97106 * 20 19 18 22 22 C 1.47352 * 110.99478 * 25.20551 * 14 13 12 23 23 C 1.38743 * 120.68369 * 359.46885 * 13 12 11 24 24 H 0.96996 * 120.00190 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.43022 * 359.95332 * 10 9 7 26 26 H 1.08002 * 119.36576 * 180.02562 * 11 10 9 27 27 H 1.09005 * 109.41371 * 172.87702 * 15 14 13 28 28 H 1.08999 * 109.41878 * 292.74170 * 15 14 13 29 29 H 1.08993 * 109.71559 * 169.87827 * 16 15 14 30 30 H 1.08999 * 109.71243 * 290.48328 * 16 15 14 31 31 H 1.07995 * 125.91895 * 0.19219 * 18 17 16 32 32 H 1.07998 * 126.25873 * 179.97438 * 19 18 17 33 33 H 1.08000 * 126.33291 * 180.23946 * 20 19 18 34 34 H 1.09009 * 109.74803 * 166.45050 * 22 14 13 35 35 H 1.08991 * 109.79940 * 45.73270 * 22 14 13 36 36 H 1.08004 * 120.66483 * 180.23420 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4388 2.6526 0.7001 6 1 3.5389 1.4403 0.7000 7 6 2.0076 -1.2126 -0.0005 8 1 3.0657 -1.2254 0.2157 9 6 1.3286 -2.4218 -0.2846 10 6 1.7940 -3.6537 0.2243 11 6 1.1095 -4.7973 -0.0729 12 7 0.0212 -4.7701 -0.8211 13 6 -0.4585 -3.6443 -1.3299 14 7 -1.6059 -3.6779 -2.1153 15 6 -1.2664 -3.6542 -3.5448 16 6 -0.2576 -4.7661 -3.8574 17 7 -0.7707 -6.0220 -3.2963 18 6 -0.3817 -7.2890 -3.5887 19 6 -1.1218 -8.1390 -2.8444 20 6 -2.0008 -7.3613 -2.0609 21 6 -1.7648 -6.0742 -2.3546 22 6 -2.4374 -4.8488 -1.7853 23 6 0.1689 -2.4318 -1.0826 24 1 -0.4850 0.8400 0.0004 25 1 2.6802 -3.6913 0.8406 26 1 1.4621 -5.7416 0.3149 27 1 -2.1702 -3.8084 -4.1345 28 1 -0.8294 -2.6881 -3.7976 29 1 -0.1426 -4.8655 -4.9367 30 1 0.7050 -4.5269 -3.4055 31 1 0.3859 -7.5691 -4.2948 32 1 -1.0528 -9.2168 -2.8476 33 1 -2.7259 -7.7336 -1.3525 34 1 -3.4275 -4.7335 -2.2265 35 1 -2.5254 -4.9459 -0.7033 36 1 -0.2243 -1.5140 -1.4943 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166602254.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:33 Heat of formation + Delta-G solvation = 86.286082 kcal Electronic energy + Delta-G solvation = -20568.145311 eV Core-core repulsion = 17631.640374 eV Total energy + Delta-G solvation = -2936.504937 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.57589 -40.45163 -37.95521 -35.86550 -33.96233 -32.44109 -31.52530 -30.06883 -28.73937 -27.86567 -25.69238 -24.41520 -23.43607 -21.99847 -21.26940 -19.98353 -18.89360 -18.06139 -17.45172 -16.90497 -16.64486 -16.37515 -16.02579 -15.43360 -14.86739 -14.67356 -14.45370 -14.32884 -14.13284 -13.81458 -13.15126 -13.09488 -13.00522 -12.93771 -12.83824 -12.82635 -12.64571 -12.29947 -11.95855 -11.85721 -11.25401 -10.38857 -9.90795 -9.86680 -9.34412 -8.96767 -8.70487 -8.62184 -6.57112 0.80069 0.99055 1.39120 1.52208 1.52945 1.54238 2.10996 2.18556 2.27447 2.73735 2.87264 3.57719 3.66595 3.85523 3.94163 4.14435 4.15040 4.31473 4.49640 4.58741 4.62544 4.73243 4.75581 4.82868 4.88502 4.93257 5.02539 5.22923 5.29237 5.47370 5.52517 5.55647 5.74430 5.89167 5.97353 6.27774 6.34984 6.46947 6.66161 6.69115 6.82071 6.83140 7.68334 8.27503 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.033634 B = 0.005566 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.300989 B = 5029.428950 C = 5284.278139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.039 3.961 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.489 4.489 8 H 0.080 0.920 9 C 0.105 3.895 10 C -0.288 4.288 11 C 0.108 3.892 12 N -0.579 5.579 13 C 0.277 3.723 14 N -0.485 5.485 15 C 0.052 3.948 16 C 0.080 3.920 17 N -0.438 5.438 18 C -0.025 4.025 19 C -0.216 4.216 20 C -0.219 4.219 21 C 0.023 3.977 22 C 0.136 3.864 23 C -0.211 4.211 24 H 0.291 0.709 25 H 0.108 0.892 26 H 0.138 0.862 27 H 0.112 0.888 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.049 0.951 31 H 0.175 0.825 32 H 0.145 0.855 33 H 0.133 0.867 34 H 0.110 0.890 35 H 0.072 0.928 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.213 -4.959 -7.758 9.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.178 4.178 3 Si 0.807 3.193 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.520 4.520 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.311 4.311 11 C -0.046 4.046 12 N -0.297 5.297 13 C 0.052 3.948 14 N -0.204 5.204 15 C -0.075 4.075 16 C -0.043 4.043 17 N -0.114 5.114 18 C -0.155 4.155 19 C -0.241 4.241 20 C -0.243 4.243 21 C -0.091 4.091 22 C 0.008 3.992 23 C -0.235 4.235 24 H 0.102 0.898 25 H 0.126 0.874 26 H 0.156 0.844 27 H 0.130 0.870 28 H 0.116 0.884 29 H 0.136 0.864 30 H 0.068 0.932 31 H 0.192 0.808 32 H 0.163 0.837 33 H 0.151 0.849 34 H 0.128 0.872 35 H 0.090 0.910 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.015 -4.847 -8.008 9.834 hybrid contribution 1.422 0.725 0.561 1.692 sum -1.593 -4.122 -7.447 8.659 Atomic orbital electron populations 1.69824 1.09005 1.30919 1.34219 1.26795 0.95522 1.04527 0.90973 0.85137 0.78940 0.75601 0.79669 1.18399 1.19238 1.18248 1.19851 0.96970 0.91441 1.43689 0.90138 1.18123 0.91293 0.93230 0.87708 1.21810 1.05567 0.94362 1.09411 1.21739 0.91181 0.97101 0.94625 1.67528 1.15711 1.28840 1.17599 1.19531 0.90414 0.89441 0.95396 1.60154 1.15259 1.40356 1.04600 1.22617 0.99533 0.98315 0.87031 1.22496 0.97908 0.83392 1.00497 1.43969 1.29167 1.05768 1.32525 1.21893 1.04694 0.82488 1.06387 1.21045 1.01423 0.99139 1.02473 1.20466 1.05910 0.91942 1.06028 1.20777 0.95347 0.96727 0.96231 1.20814 0.95428 0.82724 1.00260 1.21614 1.00650 0.96309 1.04938 0.89800 0.87385 0.84426 0.87025 0.88386 0.86360 0.93230 0.80823 0.83686 0.84863 0.87241 0.90963 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.29 10.92 21.84 0.24 -41.05 16 2 C 0.04 1.88 5.25 85.29 0.45 2.33 16 3 Si 0.99 36.48 29.58 68.60 2.03 38.51 16 4 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 5 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 6 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 7 C -0.49 -25.46 9.12 23.52 0.21 -25.24 16 8 H 0.08 4.03 7.88 -2.91 -0.02 4.01 16 9 C 0.10 5.56 5.58 -21.12 -0.12 5.44 16 10 C -0.29 -14.11 9.85 22.60 0.22 -13.89 16 11 C 0.11 4.99 11.10 84.26 0.94 5.92 16 12 N -0.58 -26.76 7.18 -194.47 -1.40 -28.16 16 13 C 0.28 12.77 4.39 132.90 0.58 13.35 16 14 N -0.48 -18.76 4.94 -703.94 -3.48 -22.24 16 15 C 0.05 1.60 5.88 86.41 0.51 2.11 16 16 C 0.08 2.46 6.33 86.44 0.55 3.01 16 17 N -0.44 -14.58 2.82 -508.71 -1.44 -16.02 16 18 C -0.03 -0.76 11.55 83.36 0.96 0.20 16 19 C -0.22 -6.68 10.87 22.24 0.24 -6.44 16 20 C -0.22 -7.38 10.81 22.03 0.24 -7.15 16 21 C 0.02 0.80 4.99 40.88 0.20 1.00 16 22 C 0.14 4.77 5.86 85.55 0.50 5.27 16 23 C -0.21 -10.82 8.61 23.01 0.20 -10.62 16 24 H 0.29 13.33 8.29 -92.71 -0.77 12.56 16 25 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 26 H 0.14 5.61 8.06 -2.91 -0.02 5.59 16 27 H 0.11 2.80 8.07 -2.38 -0.02 2.78 16 28 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.05 1.84 7.42 -2.39 -0.02 1.82 16 31 H 0.17 4.22 8.06 -2.91 -0.02 4.20 16 32 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 33 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 34 H 0.11 3.17 8.14 -2.38 -0.02 3.15 16 35 H 0.07 2.82 7.89 -2.39 -0.02 2.80 16 36 H 0.11 6.13 6.29 -2.91 -0.02 6.11 16 Total: -1.00 -60.95 297.53 2.72 -58.23 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: 1.08 Total: 35.44 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: 5.69 Total: -24.71 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -6.08 Total: -107.47 kcal Atomic # 14 Polarization: 36.48 SS G_CDS: 2.03 Total: 38.51 kcal Total: -60.95 2.72 -58.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166602254.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.511 kcal (2) G-P(sol) polarization free energy of solvation -60.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds