Wall clock time and date at job start Mon Mar 30 2020 00:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46798 * 2 1 4 4 C 1.52998 * 109.47057 * 240.00491 * 2 1 3 5 5 C 1.50706 * 109.47348 * 174.99602 * 4 2 1 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00436 * 179.72505 * 5 4 2 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47154 * 89.99418 * 9 7 5 11 11 H 1.48493 * 109.47010 * 209.99942 * 9 7 5 12 12 H 1.48502 * 109.46736 * 329.99638 * 9 7 5 13 13 S 1.80994 * 109.47474 * 120.00310 * 2 1 3 14 14 C 1.76201 * 99.99886 * 294.99858 * 13 2 1 15 15 N 1.31127 * 125.71942 * 179.97438 * 14 13 2 16 16 C 1.34704 * 108.60041 * 179.97438 * 15 14 13 17 17 C 1.50702 * 126.09191 * 180.02562 * 16 15 14 18 18 C 1.53003 * 109.47083 * 254.97225 * 17 16 15 19 19 C 1.52996 * 109.47335 * 14.97698 * 17 16 15 20 20 C 1.53002 * 109.46909 * 134.97939 * 17 16 15 21 21 C 1.34094 * 107.81378 * 0.02562 * 16 15 14 22 22 O 1.34270 * 125.72314 * 359.69470 * 14 13 2 23 23 H 1.08995 * 109.47105 * 299.99250 * 1 2 3 24 24 H 1.08998 * 109.47635 * 60.00165 * 1 2 3 25 25 H 1.09004 * 109.46798 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47671 * 54.99810 * 4 2 1 27 27 H 1.08998 * 109.47454 * 294.99808 * 4 2 1 28 28 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.46930 * 60.00342 * 18 17 16 30 30 H 1.08999 * 109.46992 * 179.97438 * 18 17 16 31 31 H 1.09000 * 109.47293 * 300.00303 * 18 17 16 32 32 H 1.08995 * 109.47307 * 60.00101 * 19 17 16 33 33 H 1.08999 * 109.47158 * 180.02562 * 19 17 16 34 34 H 1.09004 * 109.47005 * 299.99857 * 19 17 16 35 35 H 1.09000 * 109.47479 * 59.99690 * 20 17 16 36 36 H 1.08999 * 109.46826 * 180.02562 * 20 17 16 37 37 H 1.08995 * 109.47021 * 299.99463 * 20 17 16 38 38 H 1.07999 * 126.36029 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6147 -1.3129 6 1 4.0789 -0.0853 -0.5397 7 6 4.2309 -1.1976 -2.3552 8 7 3.5774 -1.8469 -3.2938 9 14 6.0926 -1.0664 -2.4336 10 1 6.7005 -2.2157 -1.7163 11 1 6.5305 -1.0806 -3.8525 12 1 6.5267 0.2018 -1.7943 13 16 2.1334 -0.8533 1.4777 14 6 1.5441 0.2422 2.7256 15 7 1.7108 0.0916 4.0175 16 6 1.1232 1.1256 4.6500 17 6 1.0786 1.3451 6.1403 18 6 -0.3212 1.0153 6.6627 19 6 2.1042 0.4363 6.8207 20 6 1.4072 2.8069 6.4505 21 6 0.5851 1.9247 3.7173 22 8 0.8535 1.3739 2.5130 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6054 -0.2616 -2.1370 27 1 1.7517 -1.7714 -1.2058 28 1 4.0620 -2.2574 -4.0270 29 1 -0.5554 -0.0261 6.4417 30 1 -0.3533 1.1737 7.7406 31 1 -1.0518 1.6628 6.1780 32 1 3.1013 0.6713 6.4486 33 1 2.0715 0.5948 7.8986 34 1 1.8699 -0.6051 6.5997 35 1 0.6766 3.4544 5.9658 36 1 1.3754 2.9656 7.5284 37 1 2.4044 3.0419 6.0784 38 1 0.0422 2.8412 3.8953 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166964617.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:44 Heat of formation + Delta-G solvation = -25.152075 kcal Electronic energy + Delta-G solvation = -18309.747042 eV Core-core repulsion = 15471.560984 eV Total energy + Delta-G solvation = -2838.186058 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.19081 -38.30012 -36.55322 -34.98571 -34.10580 -30.77041 -29.41708 -28.16607 -28.11875 -25.32548 -24.30115 -23.85011 -22.23260 -20.61828 -18.76112 -18.52019 -17.72407 -17.35600 -16.59281 -16.36480 -15.87432 -15.14028 -14.99858 -14.84765 -14.43086 -14.33803 -13.72794 -13.36799 -13.22886 -13.18730 -12.93953 -12.69088 -12.57102 -12.53058 -12.43005 -12.34277 -12.13269 -11.92862 -11.83796 -11.57638 -11.40666 -11.31838 -11.19038 -10.57095 -10.42947 -8.55252 -8.22578 -6.31844 0.05679 0.37487 0.98029 1.40673 1.42031 1.52180 1.61461 2.39584 2.40639 3.13058 3.44439 3.75660 3.96113 4.06709 4.07296 4.20828 4.26431 4.42327 4.50472 4.78142 4.79107 4.81127 4.81584 4.89051 4.89367 4.96791 5.02622 5.04939 5.13347 5.17952 5.35436 5.40850 5.43333 5.44699 5.46569 5.74475 6.12997 6.62125 6.80201 7.37076 8.88796 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.031012 B = 0.004285 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.668372 B = 6533.442029 C = 7000.810552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.071 4.071 3 H 0.085 0.915 4 C 0.045 3.955 5 C -0.539 4.539 6 H 0.063 0.937 7 C 0.011 3.989 8 N -0.927 5.927 9 Si 0.955 3.045 10 H -0.275 1.275 11 H -0.280 1.280 12 H -0.265 1.265 13 S 0.045 5.955 14 C 0.155 3.845 15 N -0.490 5.490 16 C -0.007 4.007 17 C 0.011 3.989 18 C -0.133 4.133 19 C -0.129 4.129 20 C -0.136 4.136 21 C -0.081 4.081 22 O -0.206 6.206 23 H 0.062 0.938 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.026 0.974 27 H 0.008 0.992 28 H 0.265 0.735 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.045 0.955 38 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.259 9.434 18.420 22.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.200 4.200 3 H 0.103 0.897 4 C 0.007 3.993 5 C -0.578 4.578 6 H 0.081 0.919 7 C -0.188 4.188 8 N -0.567 5.567 9 Si 0.780 3.220 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.190 1.190 13 S 0.276 5.724 14 C -0.159 4.159 15 N -0.223 5.223 16 C -0.129 4.129 17 C 0.010 3.990 18 C -0.191 4.191 19 C -0.187 4.187 20 C -0.194 4.194 21 C -0.155 4.155 22 O -0.094 6.094 23 H 0.080 0.920 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.044 0.956 27 H 0.026 0.974 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -7.288 7.813 18.538 21.396 hybrid contribution 0.082 1.302 -1.054 1.678 sum -7.205 9.115 17.484 20.992 Atomic orbital electron populations 1.22079 0.91625 1.03027 1.02872 1.23600 0.99498 1.01868 0.95019 0.89686 1.18863 0.95521 0.94735 0.90196 1.21591 0.92832 1.34690 1.08653 0.91922 1.25786 1.03145 0.94677 0.95200 1.70054 1.37524 1.36177 1.12925 0.85592 0.80119 0.78937 0.77381 1.20033 1.20584 1.18982 1.86671 1.67686 1.25436 0.92565 1.28586 0.99084 0.90685 0.97495 1.70752 1.23076 1.26214 1.02300 1.22290 0.99781 0.91914 0.98870 1.19120 0.97682 0.97721 0.84467 1.21871 0.93730 1.01184 1.02291 1.21695 0.97623 0.98840 1.00505 1.21917 1.01643 0.92496 1.03336 1.25447 1.06678 1.02895 0.80442 1.84765 1.57344 1.32583 1.34738 0.91957 0.90360 0.91633 0.95623 0.97370 0.92624 0.94128 0.89659 0.91338 0.94194 0.90147 0.93868 0.90816 0.89670 0.93558 0.73247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 9.02 71.98 0.65 -3.92 16 2 C -0.07 -2.87 2.31 30.59 0.07 -2.80 16 3 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 4 C 0.05 2.27 4.44 29.85 0.13 2.40 16 5 C -0.54 -29.58 8.53 25.60 0.22 -29.36 16 6 H 0.06 3.39 7.60 -2.91 -0.02 3.37 16 7 C 0.01 0.60 5.46 84.65 0.46 1.06 16 8 N -0.93 -54.59 13.29 21.45 0.28 -54.31 16 9 Si 0.95 44.01 29.54 68.60 2.03 46.03 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 13 S 0.04 1.82 21.07 -56.49 -1.19 0.63 16 14 C 0.15 5.73 8.00 130.35 1.04 6.77 16 15 N -0.49 -17.52 10.71 -300.14 -3.22 -20.74 16 16 C -0.01 -0.19 5.53 41.17 0.23 0.03 16 17 C 0.01 0.21 0.95 -52.93 -0.05 0.16 16 18 C -0.13 -2.08 8.46 71.98 0.61 -1.48 16 19 C -0.13 -2.78 8.04 71.98 0.58 -2.20 16 20 C -0.14 -1.92 8.19 71.98 0.59 -1.33 16 21 C -0.08 -2.01 11.43 66.87 0.76 -1.25 16 22 O -0.21 -6.70 8.45 -10.45 -0.09 -6.79 16 23 H 0.06 1.92 5.96 -2.39 -0.01 1.91 16 24 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 25 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 29 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.04 1.09 8.09 -2.38 -0.02 1.07 16 35 H 0.07 0.78 7.49 -2.39 -0.02 0.77 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.25 3.58 7.65 -2.91 -0.02 3.55 16 Total: -1.00 -65.26 327.53 4.13 -61.13 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: 1.02 Total: 5.95 kcal Atomic # 6 Polarization: -37.20 SS G_CDS: 5.29 Total: -31.91 kcal Atomic # 7 Polarization: -72.11 SS G_CDS: -2.93 Total: -75.04 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.09 Total: -6.79 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -1.19 Total: 0.63 kcal Total: -65.26 4.13 -61.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166964617.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.974 kcal (2) G-P(sol) polarization free energy of solvation -65.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds