Wall clock time and date at job start Mon Mar 30 2020 00:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47447 * 2 1 4 4 C 1.53005 * 109.46884 * 120.00098 * 2 1 3 5 5 C 1.50704 * 109.46701 * 184.99939 * 4 2 1 6 6 H 1.08001 * 119.99985 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99920 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99801 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00304 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47090 * 59.99623 * 9 7 5 11 11 H 1.48497 * 109.47014 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46613 * 300.00116 * 9 7 5 13 13 S 1.80999 * 109.46876 * 239.99616 * 2 1 3 14 14 C 1.76204 * 99.99946 * 65.00256 * 13 2 1 15 15 N 1.31118 * 125.72313 * 179.97438 * 14 13 2 16 16 C 1.34697 * 108.60587 * 180.02562 * 15 14 13 17 17 C 1.50698 * 126.09716 * 179.97438 * 16 15 14 18 18 C 1.52994 * 109.47742 * 254.97693 * 17 16 15 19 19 C 1.53001 * 109.46942 * 14.97932 * 17 16 15 20 20 C 1.52997 * 109.47125 * 134.97525 * 17 16 15 21 21 C 1.34100 * 107.80909 * 0.02562 * 16 15 14 22 22 O 1.34264 * 125.72085 * 0.02562 * 14 13 2 23 23 H 1.08996 * 109.47083 * 59.99713 * 1 2 3 24 24 H 1.08999 * 109.47408 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47059 * 300.00244 * 1 2 3 26 26 H 1.08997 * 109.46856 * 304.99583 * 4 2 1 27 27 H 1.08998 * 109.47161 * 64.99793 * 4 2 1 28 28 H 0.97003 * 119.99867 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.46719 * 59.99790 * 18 17 16 30 30 H 1.08996 * 109.47539 * 180.02562 * 18 17 16 31 31 H 1.09004 * 109.46990 * 300.00327 * 18 17 16 32 32 H 1.09003 * 109.47432 * 59.99853 * 19 17 16 33 33 H 1.09006 * 109.46878 * 179.97438 * 19 17 16 34 34 H 1.09001 * 109.47290 * 299.99462 * 19 17 16 35 35 H 1.09001 * 109.47201 * 59.99871 * 20 17 16 36 36 H 1.08996 * 109.47759 * 180.02562 * 20 17 16 37 37 H 1.09000 * 109.47595 * 300.00416 * 20 17 16 38 38 H 1.08001 * 126.35739 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2304 -1.1927 2.3583 8 7 3.5763 -1.8370 3.3000 9 14 6.0921 -1.0615 2.4366 10 1 6.4855 0.3692 2.4950 11 1 6.5870 -1.7615 3.6492 12 1 6.6837 -1.6886 1.2275 13 16 2.1333 -0.8534 -1.4778 14 6 1.5439 0.2422 -2.7257 15 7 1.7113 0.0921 -4.0175 16 6 1.1234 1.1259 -4.6500 17 6 1.0794 1.3459 -6.1402 18 6 2.0608 2.4560 -6.5212 19 6 1.4687 0.0523 -6.8584 20 6 -0.3363 1.7526 -6.5540 21 6 0.5854 1.9250 -3.7172 22 8 0.8489 1.3711 -2.5132 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6054 -0.2617 2.1370 27 1 1.7516 -1.7715 1.2056 28 1 4.0606 -2.2431 4.0358 29 1 3.0694 2.1662 -6.2264 30 1 2.0285 2.6154 -7.5989 31 1 1.7834 3.3776 -6.0095 32 1 0.7695 -0.7387 -6.5870 33 1 1.4364 0.2113 -7.9363 34 1 2.4773 -0.2375 -6.5637 35 1 -0.6138 2.6742 -6.0422 36 1 -0.3684 1.9113 -7.6318 37 1 -1.0356 0.9618 -6.2826 38 1 0.0416 2.8410 -3.8952 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166964618.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:46 Heat of formation + Delta-G solvation = -7.212313 kcal Electronic energy + Delta-G solvation = -18308.708318 eV Core-core repulsion = 15471.300187 eV Total energy + Delta-G solvation = -2837.408131 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.92886 -37.37670 -34.76701 -33.71169 -32.16072 -29.55874 -27.62470 -27.42140 -27.28156 -23.43307 -23.04399 -22.65747 -20.55220 -19.53201 -17.52420 -16.45259 -16.41098 -15.97585 -15.12537 -14.80049 -14.48161 -14.22166 -14.15828 -13.42807 -13.10608 -12.71438 -12.52527 -12.23501 -11.92808 -11.78900 -11.74610 -11.35431 -11.28897 -11.16986 -11.04160 -10.92993 -10.80188 -10.68718 -10.58177 -10.20980 -9.66549 -9.63859 -9.33290 -9.13989 -8.45522 -7.07486 -6.10740 -4.14181 1.51610 1.62981 2.48221 2.84045 3.31708 3.35581 3.39449 3.61920 4.40049 4.43769 4.65740 4.86640 5.10547 5.21803 5.26864 5.40728 5.48696 5.52928 5.60247 5.61979 5.66773 5.77096 5.80773 5.83975 5.90594 5.93970 6.07882 6.17895 6.29141 6.34740 6.42429 6.46477 6.57077 7.40005 7.44763 7.85572 7.87876 8.19689 8.90496 9.51204 11.00064 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.031016 B = 0.004284 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.548194 B = 6534.641962 C = 7002.267929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 H 0.089 0.911 4 C 0.039 3.961 5 C -0.529 4.529 6 H 0.064 0.936 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.893 3.107 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.273 1.273 13 S 0.078 5.922 14 C 0.175 3.825 15 N -0.475 5.475 16 C 0.010 3.990 17 C 0.013 3.987 18 C -0.138 4.138 19 C -0.130 4.130 20 C -0.139 4.139 21 C -0.097 4.097 22 O -0.198 6.198 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.041 0.959 27 H 0.029 0.971 28 H 0.263 0.737 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.607 7.456 -16.445 19.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.213 4.213 3 H 0.107 0.893 4 C 0.000 4.000 5 C -0.568 4.568 6 H 0.082 0.918 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.721 3.279 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.199 1.199 13 S 0.310 5.690 14 C -0.138 4.138 15 N -0.208 5.208 16 C -0.112 4.112 17 C 0.012 3.988 18 C -0.196 4.196 19 C -0.188 4.188 20 C -0.197 4.197 21 C -0.171 4.171 22 O -0.087 6.087 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -6.631 5.815 -16.563 18.765 hybrid contribution -0.053 1.872 0.592 1.964 sum -6.684 7.687 -15.972 18.943 Atomic orbital electron populations 1.22159 0.94129 1.02504 1.01751 1.23860 0.97532 1.03072 0.96787 0.89265 1.19072 0.96620 0.95677 0.88600 1.21221 0.91363 1.35423 1.08758 0.91793 1.24978 0.98686 0.94872 0.95416 1.69942 1.35922 1.35310 1.11927 0.86620 0.85339 0.78386 0.77582 1.20126 1.21239 1.19875 1.86746 1.66249 1.24363 0.91652 1.29175 0.96816 0.89869 0.97902 1.70775 1.23026 1.24704 1.02249 1.21606 1.00093 0.92632 0.96854 1.18906 0.96134 0.96872 0.86903 1.21890 0.99196 0.97275 1.01189 1.21705 1.02734 0.95791 0.98525 1.21915 0.95045 1.01360 1.01386 1.24510 1.08381 1.02377 0.81878 1.84778 1.57529 1.33176 1.33192 0.93166 0.91793 0.91579 0.94071 0.95245 0.92698 0.92219 0.91976 0.92600 0.92465 0.92861 0.91696 0.92558 0.91839 0.92311 0.77759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.01 37.16 0.33 -2.14 16 2 C -0.08 -1.67 2.31 -26.73 -0.06 -1.73 16 3 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 4 C 0.04 0.95 4.44 -27.88 -0.12 0.82 16 5 C -0.53 -14.24 8.53 -34.44 -0.29 -14.53 16 6 H 0.06 1.70 7.60 -52.49 -0.40 1.30 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 S 0.08 1.54 21.06 -107.50 -2.26 -0.72 16 14 C 0.18 3.27 8.00 52.46 0.42 3.69 16 15 N -0.47 -8.57 10.71 -10.13 -0.11 -8.68 16 16 C 0.01 0.14 5.53 -82.79 -0.46 -0.32 16 17 C 0.01 0.14 0.95 -155.66 -0.15 -0.01 16 18 C -0.14 -1.34 8.46 37.15 0.31 -1.02 16 19 C -0.13 -1.48 8.04 37.16 0.30 -1.18 16 20 C -0.14 -1.21 8.19 37.16 0.30 -0.91 16 21 C -0.10 -1.34 11.43 29.28 0.33 -1.01 16 22 O -0.20 -3.37 8.44 3.52 0.03 -3.34 16 23 H 0.05 0.81 5.95 -51.93 -0.31 0.50 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 35 H 0.06 0.42 7.50 -51.93 -0.39 0.03 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.21 1.97 7.65 -52.49 -0.40 1.57 16 LS Contribution 327.51 15.07 4.94 4.94 Total: -1.00 -29.64 327.51 -6.99 -36.64 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -6.13 Total: -3.34 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 0.82 Total: -16.70 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.63 Total: -33.75 kcal Atomic # 8 Polarization: -3.37 SS G_CDS: 0.03 Total: -3.34 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.26 Total: -0.72 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.64 -6.99 -36.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166964618.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.423 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds