Wall clock time and date at job start Mon Mar 30 2020 00:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47447 * 2 1 4 4 C 1.53005 * 109.46884 * 120.00098 * 2 1 3 5 5 C 1.50704 * 109.46701 * 184.99939 * 4 2 1 6 6 H 1.08001 * 119.99985 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99920 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99801 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00304 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47090 * 59.99623 * 9 7 5 11 11 H 1.48497 * 109.47014 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46613 * 300.00116 * 9 7 5 13 13 S 1.80999 * 109.46876 * 239.99616 * 2 1 3 14 14 C 1.76204 * 99.99946 * 65.00256 * 13 2 1 15 15 N 1.31118 * 125.72313 * 179.97438 * 14 13 2 16 16 C 1.34697 * 108.60587 * 180.02562 * 15 14 13 17 17 C 1.50698 * 126.09716 * 179.97438 * 16 15 14 18 18 C 1.52994 * 109.47742 * 254.97693 * 17 16 15 19 19 C 1.53001 * 109.46942 * 14.97932 * 17 16 15 20 20 C 1.52997 * 109.47125 * 134.97525 * 17 16 15 21 21 C 1.34100 * 107.80909 * 0.02562 * 16 15 14 22 22 O 1.34264 * 125.72085 * 0.02562 * 14 13 2 23 23 H 1.08996 * 109.47083 * 59.99713 * 1 2 3 24 24 H 1.08999 * 109.47408 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47059 * 300.00244 * 1 2 3 26 26 H 1.08997 * 109.46856 * 304.99583 * 4 2 1 27 27 H 1.08998 * 109.47161 * 64.99793 * 4 2 1 28 28 H 0.97003 * 119.99867 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.46719 * 59.99790 * 18 17 16 30 30 H 1.08996 * 109.47539 * 180.02562 * 18 17 16 31 31 H 1.09004 * 109.46990 * 300.00327 * 18 17 16 32 32 H 1.09003 * 109.47432 * 59.99853 * 19 17 16 33 33 H 1.09006 * 109.46878 * 179.97438 * 19 17 16 34 34 H 1.09001 * 109.47290 * 299.99462 * 19 17 16 35 35 H 1.09001 * 109.47201 * 59.99871 * 20 17 16 36 36 H 1.08996 * 109.47759 * 180.02562 * 20 17 16 37 37 H 1.09000 * 109.47595 * 300.00416 * 20 17 16 38 38 H 1.08001 * 126.35739 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2304 -1.1927 2.3583 8 7 3.5763 -1.8370 3.3000 9 14 6.0921 -1.0615 2.4366 10 1 6.4855 0.3692 2.4950 11 1 6.5870 -1.7615 3.6492 12 1 6.6837 -1.6886 1.2275 13 16 2.1333 -0.8534 -1.4778 14 6 1.5439 0.2422 -2.7257 15 7 1.7113 0.0921 -4.0175 16 6 1.1234 1.1259 -4.6500 17 6 1.0794 1.3459 -6.1402 18 6 2.0608 2.4560 -6.5212 19 6 1.4687 0.0523 -6.8584 20 6 -0.3363 1.7526 -6.5540 21 6 0.5854 1.9250 -3.7172 22 8 0.8489 1.3711 -2.5132 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6054 -0.2617 2.1370 27 1 1.7516 -1.7715 1.2056 28 1 4.0606 -2.2431 4.0358 29 1 3.0694 2.1662 -6.2264 30 1 2.0285 2.6154 -7.5989 31 1 1.7834 3.3776 -6.0095 32 1 0.7695 -0.7387 -6.5870 33 1 1.4364 0.2113 -7.9363 34 1 2.4773 -0.2375 -6.5637 35 1 -0.6138 2.6742 -6.0422 36 1 -0.3684 1.9113 -7.6318 37 1 -1.0356 0.9618 -6.2826 38 1 0.0416 2.8410 -3.8952 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166964618.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:46 Heat of formation + Delta-G solvation = -25.060836 kcal Electronic energy + Delta-G solvation = -18309.482288 eV Core-core repulsion = 15471.300187 eV Total energy + Delta-G solvation = -2838.182101 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.19275 -38.30066 -36.55241 -34.98671 -34.10447 -30.77040 -29.41598 -28.16384 -28.12086 -25.32392 -24.30103 -23.85023 -22.23240 -20.61844 -18.76204 -18.51702 -17.72478 -17.35165 -16.59614 -16.37122 -15.87393 -15.13627 -14.99283 -14.84144 -14.43406 -14.34407 -13.72587 -13.36880 -13.22484 -13.18570 -12.93526 -12.67482 -12.57234 -12.53636 -12.43171 -12.35174 -12.13172 -11.93018 -11.83681 -11.57685 -11.40643 -11.31600 -11.20091 -10.56494 -10.42906 -8.55291 -8.22372 -6.31771 0.05688 0.37527 0.98037 1.41147 1.43278 1.50820 1.61473 2.39628 2.40764 3.13158 3.44463 3.75806 3.96144 4.06642 4.07399 4.20772 4.26398 4.42253 4.50417 4.77845 4.79125 4.81465 4.81602 4.88890 4.89416 4.96749 5.02612 5.04996 5.13357 5.17987 5.35428 5.40937 5.42821 5.44665 5.47085 5.74398 6.13025 6.62216 6.80062 7.37098 8.88798 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.031016 B = 0.004284 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.548194 B = 6534.641962 C = 7002.267929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.071 4.071 3 H 0.085 0.915 4 C 0.046 3.954 5 C -0.540 4.540 6 H 0.063 0.937 7 C 0.011 3.989 8 N -0.927 5.927 9 Si 0.954 3.046 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.270 1.270 13 S 0.044 5.956 14 C 0.155 3.845 15 N -0.490 5.490 16 C -0.007 4.007 17 C 0.011 3.989 18 C -0.135 4.135 19 C -0.129 4.129 20 C -0.135 4.135 21 C -0.081 4.081 22 O -0.206 6.206 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.026 0.974 27 H 0.008 0.992 28 H 0.265 0.735 29 H 0.037 0.963 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.193 9.458 -18.419 22.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.200 4.200 3 H 0.103 0.897 4 C 0.007 3.993 5 C -0.579 4.579 6 H 0.081 0.919 7 C -0.188 4.188 8 N -0.567 5.567 9 Si 0.779 3.221 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.195 1.195 13 S 0.276 5.724 14 C -0.158 4.158 15 N -0.223 5.223 16 C -0.129 4.129 17 C 0.010 3.990 18 C -0.192 4.192 19 C -0.186 4.186 20 C -0.193 4.193 21 C -0.155 4.155 22 O -0.094 6.094 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.044 0.956 27 H 0.026 0.974 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -7.224 7.830 -18.535 21.379 hybrid contribution 0.072 1.313 1.052 1.684 sum -7.152 9.143 -17.483 20.986 Atomic orbital electron populations 1.22080 0.91631 1.03025 1.02875 1.23602 0.99493 1.01869 0.95012 0.89673 1.18859 0.95508 0.94726 0.90191 1.21564 0.92851 1.34921 1.08533 0.91910 1.25788 1.03156 0.94656 0.95186 1.70050 1.37616 1.36409 1.12613 0.85653 0.80057 0.78720 0.77649 1.19223 1.20719 1.19541 1.86679 1.67661 1.25465 0.92571 1.28583 0.98977 0.90797 0.97493 1.70745 1.23104 1.26200 1.02299 1.22289 0.99855 0.91842 0.98872 1.19117 0.98299 0.97109 0.84463 1.21882 0.97472 0.96978 1.02899 1.21694 1.00835 0.95784 1.00313 1.21907 0.92708 1.01674 1.02993 1.25449 1.06726 1.02832 0.80450 1.84762 1.57193 1.32693 1.34768 0.91949 0.91634 0.90367 0.95638 0.97380 0.92615 0.94358 0.89589 0.91433 0.93909 0.90168 0.94062 0.90873 0.89715 0.93270 0.73244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.58 9.01 71.98 0.65 -3.93 16 2 C -0.07 -2.86 2.31 30.60 0.07 -2.79 16 3 H 0.08 3.48 8.14 -2.40 -0.02 3.46 16 4 C 0.05 2.28 4.44 29.85 0.13 2.42 16 5 C -0.54 -29.64 8.53 25.60 0.22 -29.42 16 6 H 0.06 3.39 7.60 -2.91 -0.02 3.36 16 7 C 0.01 0.61 5.46 84.65 0.46 1.08 16 8 N -0.93 -54.64 13.29 21.45 0.28 -54.35 16 9 Si 0.95 43.96 29.54 68.60 2.03 45.99 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 S 0.04 1.81 21.06 -56.49 -1.19 0.62 16 14 C 0.15 5.73 8.00 130.35 1.04 6.77 16 15 N -0.49 -17.53 10.71 -300.16 -3.22 -20.75 16 16 C -0.01 -0.19 5.53 41.18 0.23 0.03 16 17 C 0.01 0.21 0.95 -52.93 -0.05 0.16 16 18 C -0.13 -2.21 8.46 71.98 0.61 -1.60 16 19 C -0.13 -2.75 8.04 71.98 0.58 -2.17 16 20 C -0.14 -1.83 8.19 71.98 0.59 -1.24 16 21 C -0.08 -2.01 11.43 66.88 0.76 -1.24 16 22 O -0.21 -6.69 8.44 -10.33 -0.09 -6.78 16 23 H 0.06 1.93 5.95 -2.39 -0.01 1.91 16 24 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 29 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.04 1.05 8.09 -2.39 -0.02 1.03 16 35 H 0.07 0.75 7.50 -2.39 -0.02 0.73 16 36 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.25 3.58 7.65 -2.91 -0.02 3.55 16 Total: -1.00 -65.24 327.51 4.13 -61.10 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 1.02 Total: 6.11 kcal Atomic # 6 Polarization: -37.23 SS G_CDS: 5.29 Total: -31.93 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -2.93 Total: -75.10 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.09 Total: -6.78 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.19 Total: 0.62 kcal Total: -65.24 4.13 -61.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166964618.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.041 kcal (2) G-P(sol) polarization free energy of solvation -65.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds