Wall clock time and date at job start Mon Mar 30 2020 01:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86793 * 120.00204 * 2 1 4 4 H 1.48501 * 109.47204 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47266 * 299.99612 * 3 2 1 6 6 H 1.48506 * 109.47448 * 60.00246 * 3 2 1 7 7 C 1.38814 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00185 * 158.41596 * 7 2 1 9 9 N 1.36916 * 120.00010 * 338.42896 * 7 2 1 10 10 C 1.46502 * 119.99954 * 323.60979 * 9 7 2 11 11 C 1.50697 * 109.47462 * 270.00676 * 10 9 7 12 12 C 1.38240 * 119.99823 * 269.72474 * 11 10 9 13 13 C 1.38231 * 119.99585 * 179.76360 * 12 11 10 14 14 C 1.38234 * 120.00375 * 0.50691 * 13 12 11 15 15 C 1.38239 * 119.99737 * 359.75008 * 14 13 12 16 16 C 1.38227 * 119.99959 * 359.97438 * 15 14 13 17 17 C 1.38878 * 120.00331 * 143.61792 * 9 7 2 18 18 C 1.38923 * 119.67141 * 353.18964 * 17 9 7 19 19 C 1.39141 * 118.99708 * 180.25488 * 18 17 9 20 20 N 1.39201 * 120.82089 * 180.02562 * 19 18 17 21 21 C 1.39679 * 118.35446 * 0.02562 * 19 18 17 22 22 C 1.37830 * 119.24445 * 359.97438 * 21 19 18 23 23 N 1.32011 * 120.94795 * 359.97438 * 22 21 19 24 24 H 0.97005 * 119.99636 * 355.47995 * 1 2 3 25 25 H 1.09003 * 109.46659 * 30.00919 * 10 9 7 26 26 H 1.09003 * 109.47130 * 150.00293 * 10 9 7 27 27 H 1.08000 * 119.99748 * 359.97438 * 12 11 10 28 28 H 1.08009 * 119.99833 * 180.23391 * 13 12 11 29 29 H 1.07997 * 119.99877 * 179.71735 * 14 13 12 30 30 H 1.07998 * 119.99463 * 179.97438 * 15 14 13 31 31 H 1.08003 * 120.00225 * 179.97438 * 16 15 14 32 32 H 1.07999 * 120.50111 * 0.27581 * 18 17 9 33 33 H 0.97005 * 120.00121 * 179.97438 * 20 19 18 34 34 H 0.96998 * 120.00317 * 359.97130 * 20 19 18 35 35 H 1.08001 * 120.37549 * 180.02562 * 21 19 18 36 36 H 1.07998 * 119.52755 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7097 1.3463 -0.0006 5 1 1.8911 2.3963 -1.2125 6 1 1.8911 2.3964 1.2126 7 6 2.0097 -1.2022 0.0005 8 1 3.0329 -1.2352 -0.3435 9 7 1.3970 -2.3462 0.4370 10 6 0.4554 -2.2909 1.5579 11 6 1.2011 -2.4973 2.8511 12 6 1.3639 -3.7727 3.3591 13 6 2.0521 -3.9625 4.5427 14 6 2.5684 -2.8761 5.2240 15 6 2.4010 -1.6003 4.7187 16 6 1.7177 -1.4110 3.5321 17 6 1.6683 -3.5590 -0.1828 18 6 2.4494 -3.5849 -1.3313 19 6 2.7079 -4.8072 -1.9438 20 7 3.4863 -4.8772 -3.0957 21 6 2.1671 -5.9622 -1.3742 22 6 1.4015 -5.8552 -0.2330 23 7 1.1753 -4.6805 0.3250 24 1 -0.4850 0.8375 0.0662 25 1 -0.0351 -1.3175 1.5727 26 1 -0.2942 -3.0737 1.4418 27 1 0.9563 -4.6210 2.8293 28 1 2.1826 -4.9593 4.9377 29 1 3.1022 -3.0241 6.1511 30 1 2.8041 -0.7516 5.2512 31 1 1.5865 -0.4142 3.1376 32 1 2.8503 -2.6702 -1.7423 33 1 3.6594 -5.7358 -3.5127 34 1 3.8557 -4.0675 -3.4814 35 1 2.3473 -6.9281 -1.8224 36 1 0.9814 -6.7453 0.2115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166993826.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:16 Heat of formation + Delta-G solvation = 59.075481 kcal Electronic energy + Delta-G solvation = -20108.504994 eV Core-core repulsion = 17170.820117 eV Total energy + Delta-G solvation = -2937.684877 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.83126 -39.85092 -37.68374 -35.75381 -33.82352 -32.68964 -31.62628 -30.25361 -30.09505 -27.65909 -25.77294 -23.67473 -23.24276 -22.66211 -21.61559 -19.38117 -18.34412 -17.79719 -17.34496 -16.76024 -16.20402 -16.02325 -15.91251 -15.83906 -15.31358 -14.96741 -14.59906 -14.28913 -14.11413 -13.94087 -13.59178 -13.17532 -12.96594 -12.84663 -12.53735 -12.32346 -12.11529 -11.98981 -11.81524 -11.67630 -11.09485 -10.22210 -9.93252 -9.67335 -9.47588 -8.69506 -8.60376 -8.09460 -5.88473 0.58223 0.65003 0.90762 1.15194 1.41030 1.42881 1.53245 2.27084 2.85015 2.96586 3.13305 3.39532 3.55367 4.10758 4.15486 4.22118 4.30584 4.45245 4.60690 4.65015 4.75915 4.83752 4.92685 4.95620 5.17496 5.24825 5.29340 5.37759 5.45162 5.50129 5.58843 5.70441 5.73141 5.88635 6.05008 6.25176 6.30763 6.70380 6.75414 7.13500 7.40673 7.48543 8.10130 8.73177 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.012185 B = 0.009299 C = 0.005942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.267019 B = 3010.263965 C = 4711.169492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.312 4.312 8 H 0.074 0.926 9 N -0.439 5.439 10 C 0.166 3.834 11 C -0.099 4.099 12 C -0.112 4.112 13 C -0.131 4.131 14 C -0.126 4.126 15 C -0.132 4.132 16 C -0.121 4.121 17 C 0.390 3.610 18 C -0.349 4.349 19 C 0.279 3.721 20 N -0.857 5.857 21 C -0.342 4.342 22 C 0.169 3.831 23 N -0.608 5.608 24 H 0.269 0.731 25 H 0.085 0.915 26 H 0.050 0.950 27 H 0.123 0.877 28 H 0.143 0.857 29 H 0.151 0.849 30 H 0.139 0.861 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.409 0.591 34 H 0.401 0.599 35 H 0.143 0.857 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.401 -7.131 3.320 9.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.202 4.202 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.197 1.197 7 C -0.441 4.441 8 H 0.092 0.908 9 N -0.132 5.132 10 C 0.043 3.957 11 C -0.100 4.100 12 C -0.131 4.131 13 C -0.149 4.149 14 C -0.144 4.144 15 C -0.150 4.150 16 C -0.140 4.140 17 C 0.154 3.846 18 C -0.381 4.381 19 C 0.166 3.834 20 N -0.398 5.398 21 C -0.372 4.372 22 C 0.008 3.992 23 N -0.331 5.331 24 H 0.079 0.921 25 H 0.103 0.897 26 H 0.068 0.932 27 H 0.141 0.859 28 H 0.161 0.839 29 H 0.168 0.832 30 H 0.157 0.843 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.239 0.761 34 H 0.230 0.770 35 H 0.161 0.839 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 4.658 -6.634 4.125 9.095 hybrid contribution 0.779 1.052 -1.448 1.952 sum 5.437 -5.582 2.676 8.239 Atomic orbital electron populations 1.70143 1.07272 1.28536 1.46847 1.26006 0.95679 1.02171 0.96392 0.85217 0.78973 0.78266 0.78079 1.18883 1.20567 1.19690 1.19381 0.95547 0.85490 1.43685 0.90819 1.42252 1.41285 1.02699 1.26961 1.20153 0.90561 1.02319 0.82715 1.20538 0.99334 0.94122 0.96033 1.21331 0.99052 0.96441 0.96228 1.21424 0.98320 1.00071 0.95070 1.21406 1.00220 0.92017 1.00795 1.21345 0.99369 0.98559 0.95710 1.21097 0.98896 0.98041 0.95937 1.18755 0.90817 0.87064 0.87992 1.20560 1.17094 0.97234 1.03251 1.17751 0.87114 0.92696 0.85887 1.42194 1.57325 1.12371 1.27866 1.21198 1.13949 0.97497 1.04548 1.22494 0.91426 0.94205 0.91088 1.67218 1.31194 0.98041 1.36689 0.92098 0.89674 0.93203 0.85931 0.83919 0.83168 0.84289 0.88265 0.87774 0.76055 0.77027 0.83905 0.81230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.00 11.39 21.65 0.25 -48.76 16 2 C 0.00 -0.01 4.96 84.87 0.42 0.41 16 3 Si 0.97 41.51 29.61 68.60 2.03 43.55 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.31 -16.93 8.34 84.04 0.70 -16.22 16 8 H 0.07 4.04 7.05 -2.91 -0.02 4.02 16 9 N -0.44 -23.25 2.61 -522.09 -1.36 -24.61 16 10 C 0.17 8.38 5.09 85.63 0.44 8.82 16 11 C -0.10 -4.38 5.46 -19.87 -0.11 -4.49 16 12 C -0.11 -4.39 9.50 22.27 0.21 -4.18 16 13 C -0.13 -4.16 10.05 22.27 0.22 -3.94 16 14 C -0.13 -3.70 10.05 22.27 0.22 -3.47 16 15 C -0.13 -4.36 10.05 22.27 0.22 -4.14 16 16 C -0.12 -4.99 9.70 22.27 0.22 -4.77 16 17 C 0.39 19.53 7.32 132.99 0.97 20.50 16 18 C -0.35 -16.17 9.15 22.65 0.21 -15.96 16 19 C 0.28 10.32 6.81 38.54 0.26 10.59 16 20 N -0.86 -22.98 9.08 -51.05 -0.46 -23.45 16 21 C -0.34 -11.53 9.99 22.52 0.23 -11.30 16 22 C 0.17 6.14 11.16 84.57 0.94 7.09 16 23 N -0.61 -27.33 8.03 -193.52 -1.55 -28.89 16 24 H 0.27 13.91 8.32 -92.70 -0.77 13.14 16 25 H 0.09 4.64 5.38 -2.39 -0.01 4.63 16 26 H 0.05 2.55 7.42 -2.39 -0.02 2.53 16 27 H 0.12 4.90 7.10 -2.91 -0.02 4.88 16 28 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 29 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 30 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 31 H 0.10 4.34 8.06 -2.91 -0.02 4.31 16 32 H 0.10 5.06 6.58 -2.91 -0.02 5.04 16 33 H 0.41 8.16 8.86 -92.70 -0.82 7.34 16 34 H 0.40 9.96 8.86 -92.71 -0.82 9.14 16 35 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 36 H 0.17 4.76 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -64.87 307.59 3.53 -61.34 By element: Atomic # 1 Polarization: 42.41 SS G_CDS: -0.52 Total: 41.89 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: 5.16 Total: -21.07 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -3.14 Total: -125.70 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.55 kcal Total: -64.87 3.53 -61.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166993826.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.418 kcal (2) G-P(sol) polarization free energy of solvation -64.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds