Wall clock time and date at job start Mon Mar 30 2020 01:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00239 * 2 1 4 4 H 1.48498 * 109.47087 * 270.00393 * 3 2 1 5 5 H 1.48497 * 109.47139 * 30.00657 * 3 2 1 6 6 H 1.48505 * 109.46904 * 150.00251 * 3 2 1 7 7 C 1.37883 * 119.99460 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99755 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00202 * 359.97438 * 7 2 1 10 10 C 1.50694 * 109.46870 * 179.97438 * 9 7 2 11 11 C 1.38290 * 119.92679 * 89.99847 * 10 9 7 12 12 C 1.38101 * 120.07510 * 180.02562 * 11 10 9 13 13 C 1.38906 * 119.92865 * 359.97438 * 12 11 10 14 14 N 1.39669 * 120.07706 * 179.97438 * 13 12 11 15 15 C 1.46507 * 120.00257 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47476 * 179.97438 * 15 14 13 17 17 C 1.38597 * 120.79551 * 89.99510 * 16 15 14 18 18 N 1.32337 * 119.09979 * 179.72102 * 17 16 15 19 19 C 1.31795 * 120.82153 * 0.28399 * 18 17 16 20 20 N 1.31796 * 121.75342 * 0.02562 * 19 18 17 21 21 C 1.32339 * 120.81472 * 359.96878 * 20 19 18 22 22 C 1.38916 * 119.84955 * 0.25523 * 13 12 11 23 23 C 1.38110 * 119.91949 * 359.49415 * 22 13 12 24 24 H 0.97002 * 119.99424 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47207 * 59.99743 * 9 7 2 26 26 H 1.09003 * 109.46808 * 299.99885 * 9 7 2 27 27 H 1.08001 * 119.95967 * 359.97438 * 11 10 9 28 28 H 1.08002 * 120.03499 * 179.97438 * 12 11 10 29 29 H 0.97002 * 120.00069 * 359.97438 * 14 13 12 30 30 H 1.09001 * 109.46846 * 59.99902 * 15 14 13 31 31 H 1.08997 * 109.46847 * 300.00516 * 15 14 13 32 32 H 1.08002 * 120.45366 * 0.02562 * 17 16 15 33 33 H 1.07992 * 119.12500 * 179.97438 * 19 18 17 34 34 H 1.08007 * 120.44447 * 179.97438 * 21 20 19 35 35 H 1.07995 * 120.03752 * 179.71956 * 22 13 12 36 36 H 1.08003 * 119.95473 * 180.25396 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4993 -0.0005 10 6 2.2301 -3.6447 -0.0018 11 6 2.6794 -4.1696 1.1961 12 6 3.5772 -5.2189 1.1985 13 6 4.0286 -5.7475 -0.0041 14 7 4.9370 -6.8084 -0.0053 15 6 5.4125 -7.3644 -1.2746 16 6 6.3769 -8.4895 -1.0005 17 6 5.9269 -9.7939 -0.8707 18 7 6.8038 -10.7568 -0.6357 19 6 8.0885 -10.4866 -0.5197 20 7 8.5516 -9.2578 -0.6311 21 6 7.7342 -8.2439 -0.8661 22 6 3.5790 -5.2148 -1.2056 23 6 2.6771 -4.1688 -1.2008 24 1 -0.4849 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8902 26 1 0.6246 -2.5571 0.8897 27 1 2.3283 -3.7579 2.1308 28 1 3.9280 -5.6281 2.1345 29 1 5.2537 -7.1767 0.8344 30 1 5.9168 -6.5852 -1.8463 31 1 4.5648 -7.7429 -1.8457 32 1 4.8755 -10.0223 -0.9650 33 1 8.7800 -11.2935 -0.3275 34 1 8.1202 -7.2392 -0.9558 35 1 3.9314 -5.6204 -2.1424 36 1 2.3240 -3.7569 -2.1347 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167261389.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:50 Heat of formation + Delta-G solvation = 67.943964 kcal Electronic energy + Delta-G solvation = -18465.383526 eV Core-core repulsion = 15528.083215 eV Total energy + Delta-G solvation = -2937.300311 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.43353 -38.93697 -36.14705 -34.11220 -33.49633 -32.41845 -30.31341 -30.00436 -27.28664 -25.61844 -25.00347 -23.34057 -22.80145 -21.54438 -20.03582 -18.04362 -17.98536 -17.18649 -16.25973 -16.00721 -15.07025 -14.81981 -14.40909 -14.18376 -14.08886 -13.99502 -13.84512 -13.52022 -12.90588 -12.71196 -12.49383 -11.90888 -11.31246 -11.23971 -11.21893 -11.19485 -10.68546 -10.53948 -10.17460 -9.97596 -9.86966 -9.61455 -9.42892 -9.06129 -8.38411 -8.27200 -6.84421 -5.98687 -4.03064 0.37995 0.65071 2.08692 2.31503 3.25073 3.32255 3.38490 3.42782 3.69647 3.75476 3.79425 4.17912 4.26599 4.40521 4.44828 4.65035 4.98657 5.21369 5.30931 5.34352 5.49292 5.52538 5.56378 5.94043 6.00360 6.08232 6.29017 6.36986 6.50543 6.67907 6.79805 7.26817 7.28398 7.35794 7.59312 7.63314 7.75454 7.95913 7.96372 7.96940 8.39726 9.02803 9.60466 11.09891 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.042743 B = 0.002951 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.925687 B = 9485.793275 C = 9756.467214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.509 4.509 8 H 0.056 0.944 9 C 0.052 3.948 10 C -0.081 4.081 11 C -0.080 4.080 12 C -0.190 4.190 13 C 0.178 3.822 14 N -0.756 5.756 15 C 0.181 3.819 16 C -0.206 4.206 17 C 0.166 3.834 18 N -0.522 5.522 19 C 0.294 3.706 20 N -0.521 5.521 21 C 0.166 3.834 22 C -0.193 4.193 23 C -0.081 4.081 24 H 0.261 0.739 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.117 0.883 28 H 0.108 0.892 29 H 0.393 0.607 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.170 0.830 33 H 0.197 0.803 34 H 0.170 0.830 35 H 0.109 0.891 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.576 -18.632 -1.962 22.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.547 4.547 8 H 0.074 0.926 9 C 0.015 3.985 10 C -0.082 4.082 11 C -0.099 4.099 12 C -0.212 4.212 13 C 0.080 3.920 14 N -0.390 5.390 15 C 0.055 3.945 16 C -0.210 4.210 17 C -0.001 4.001 18 N -0.235 5.235 19 C 0.006 3.994 20 N -0.234 5.234 21 C 0.000 4.000 22 C -0.215 4.215 23 C -0.100 4.100 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.135 0.865 28 H 0.126 0.874 29 H 0.227 0.773 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.187 0.813 33 H 0.213 0.787 34 H 0.187 0.813 35 H 0.127 0.873 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 13.095 -19.296 -1.982 23.404 hybrid contribution 0.060 1.497 0.145 1.505 sum 13.155 -17.799 -1.837 22.209 Atomic orbital electron populations 1.69963 1.06016 1.26673 1.50863 1.25024 0.94865 0.99199 0.95380 0.86567 0.79859 0.83338 0.78121 1.20658 1.21231 1.19848 1.21127 0.93040 0.90080 1.50446 0.92560 1.18258 0.92521 0.89667 0.98021 1.20483 0.98931 0.97013 0.91810 1.20845 0.96035 0.94658 0.98327 1.20460 1.03938 1.01470 0.95335 1.17556 0.91396 0.88956 0.94109 1.44351 1.50567 1.37873 1.06186 1.19890 0.94815 0.92044 0.87742 1.21786 0.97093 0.97530 1.04615 1.23284 1.00214 0.87837 0.88741 1.68497 1.04104 1.37143 1.13733 1.25073 0.90537 0.93352 0.90451 1.68504 1.40319 1.00892 1.13719 1.23297 0.89209 0.98893 0.88649 1.20508 1.04024 1.01615 0.95399 1.20859 0.96072 0.94779 0.98268 0.92944 0.95655 0.95654 0.86521 0.87440 0.77310 0.91154 0.91165 0.81274 0.78684 0.81251 0.87287 0.86551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.29 9.09 -34.44 -0.31 -14.61 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.05 1.35 5.10 -29.04 -0.15 1.20 16 10 C -0.08 -1.74 5.07 -104.59 -0.53 -2.27 16 11 C -0.08 -1.55 9.69 -39.61 -0.38 -1.93 16 12 C -0.19 -3.09 9.90 -39.38 -0.39 -3.48 16 13 C 0.18 2.66 6.65 -83.79 -0.56 2.11 16 14 N -0.76 -8.32 5.73 -59.81 -0.34 -8.67 16 15 C 0.18 1.56 5.08 -5.19 -0.03 1.53 16 16 C -0.21 -1.63 5.28 -104.36 -0.55 -2.18 16 17 C 0.17 1.34 11.01 -17.20 -0.19 1.15 16 18 N -0.52 -4.80 10.44 -14.58 -0.15 -4.95 16 19 C 0.29 2.46 12.29 -92.15 -1.13 1.33 16 20 N -0.52 -4.86 10.44 -14.58 -0.15 -5.01 16 21 C 0.17 1.38 11.01 -17.20 -0.19 1.19 16 22 C -0.19 -3.08 9.31 -39.38 -0.37 -3.45 16 23 C -0.08 -1.55 9.69 -39.61 -0.38 -1.94 16 24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.03 0.68 8.08 -51.93 -0.42 0.26 16 26 H 0.03 0.68 8.08 -51.93 -0.42 0.26 16 27 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 28 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.39 3.96 8.48 -40.82 -0.35 3.61 16 30 H 0.07 0.60 7.90 -51.93 -0.41 0.19 16 31 H 0.07 0.58 7.92 -51.93 -0.41 0.17 16 32 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.20 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.17 1.13 8.06 -52.48 -0.42 0.70 16 35 H 0.11 1.45 6.73 -52.49 -0.35 1.09 16 36 H 0.12 2.17 8.06 -52.48 -0.42 1.75 16 LS Contribution 316.98 15.07 4.78 4.78 Total: -1.00 -31.69 316.98 -9.85 -41.54 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -4.44 Total: 1.43 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -5.26 Total: -19.85 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.09 Total: -44.48 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.69 -9.85 -41.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167261389.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.483 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds