Wall clock time and date at job start Mon Mar 30 2020 01:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00239 * 2 1 4 4 H 1.48498 * 109.47087 * 270.00393 * 3 2 1 5 5 H 1.48497 * 109.47139 * 30.00657 * 3 2 1 6 6 H 1.48505 * 109.46904 * 150.00251 * 3 2 1 7 7 C 1.37883 * 119.99460 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99755 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00202 * 359.97438 * 7 2 1 10 10 C 1.50694 * 109.46870 * 179.97438 * 9 7 2 11 11 C 1.38290 * 119.92679 * 89.99847 * 10 9 7 12 12 C 1.38101 * 120.07510 * 180.02562 * 11 10 9 13 13 C 1.38906 * 119.92865 * 359.97438 * 12 11 10 14 14 N 1.39669 * 120.07706 * 179.97438 * 13 12 11 15 15 C 1.46507 * 120.00257 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47476 * 179.97438 * 15 14 13 17 17 C 1.38597 * 120.79551 * 89.99510 * 16 15 14 18 18 N 1.32337 * 119.09979 * 179.72102 * 17 16 15 19 19 C 1.31795 * 120.82153 * 0.28399 * 18 17 16 20 20 N 1.31796 * 121.75342 * 0.02562 * 19 18 17 21 21 C 1.32339 * 120.81472 * 359.96878 * 20 19 18 22 22 C 1.38916 * 119.84955 * 0.25523 * 13 12 11 23 23 C 1.38110 * 119.91949 * 359.49415 * 22 13 12 24 24 H 0.97002 * 119.99424 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47207 * 59.99743 * 9 7 2 26 26 H 1.09003 * 109.46808 * 299.99885 * 9 7 2 27 27 H 1.08001 * 119.95967 * 359.97438 * 11 10 9 28 28 H 1.08002 * 120.03499 * 179.97438 * 12 11 10 29 29 H 0.97002 * 120.00069 * 359.97438 * 14 13 12 30 30 H 1.09001 * 109.46846 * 59.99902 * 15 14 13 31 31 H 1.08997 * 109.46847 * 300.00516 * 15 14 13 32 32 H 1.08002 * 120.45366 * 0.02562 * 17 16 15 33 33 H 1.07992 * 119.12500 * 179.97438 * 19 18 17 34 34 H 1.08007 * 120.44447 * 179.97438 * 21 20 19 35 35 H 1.07995 * 120.03752 * 179.71956 * 22 13 12 36 36 H 1.08003 * 119.95473 * 180.25396 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4993 -0.0005 10 6 2.2301 -3.6447 -0.0018 11 6 2.6794 -4.1696 1.1961 12 6 3.5772 -5.2189 1.1985 13 6 4.0286 -5.7475 -0.0041 14 7 4.9370 -6.8084 -0.0053 15 6 5.4125 -7.3644 -1.2746 16 6 6.3769 -8.4895 -1.0005 17 6 5.9269 -9.7939 -0.8707 18 7 6.8038 -10.7568 -0.6357 19 6 8.0885 -10.4866 -0.5197 20 7 8.5516 -9.2578 -0.6311 21 6 7.7342 -8.2439 -0.8661 22 6 3.5790 -5.2148 -1.2056 23 6 2.6771 -4.1688 -1.2008 24 1 -0.4849 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8902 26 1 0.6246 -2.5571 0.8897 27 1 2.3283 -3.7579 2.1308 28 1 3.9280 -5.6281 2.1345 29 1 5.2537 -7.1767 0.8344 30 1 5.9168 -6.5852 -1.8463 31 1 4.5648 -7.7429 -1.8457 32 1 4.8755 -10.0223 -0.9650 33 1 8.7800 -11.2935 -0.3275 34 1 8.1202 -7.2392 -0.9558 35 1 3.9314 -5.6204 -2.1424 36 1 2.3240 -3.7569 -2.1347 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167261389.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:50 Heat of formation + Delta-G solvation = 49.451643 kcal Electronic energy + Delta-G solvation = -18466.185413 eV Core-core repulsion = 15528.083215 eV Total energy + Delta-G solvation = -2938.102198 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.04844 -40.24256 -37.23859 -35.21526 -34.73094 -33.71155 -31.66922 -31.51525 -28.56902 -26.94692 -25.60797 -24.67870 -24.16032 -22.74549 -21.47815 -18.61137 -18.60673 -18.47993 -18.25677 -17.05888 -16.65609 -15.79930 -15.72078 -15.28846 -14.98141 -14.74254 -14.60607 -14.51998 -14.40248 -14.22528 -13.98655 -13.42549 -13.17586 -12.96712 -12.53610 -12.39473 -11.88230 -11.87383 -11.62149 -11.59976 -11.35753 -10.62655 -10.60901 -10.56965 -10.22637 -9.65302 -8.29772 -7.95397 -6.28988 -0.22964 0.04914 0.70247 0.90666 1.40789 1.41878 1.53435 2.42402 2.49555 2.91262 3.13882 3.18338 3.20422 3.23044 3.58034 3.64813 3.83517 4.15050 4.26778 4.44755 4.53808 4.62365 4.68818 4.75804 4.80712 4.94559 5.04249 5.22418 5.36703 5.39140 5.41690 5.57474 5.72334 5.82906 5.90083 6.03708 6.25640 6.26644 6.57037 6.84793 6.89488 7.03455 7.39361 8.93001 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.042743 B = 0.002951 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.925687 B = 9485.793275 C = 9756.467214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.062 3.938 10 C -0.122 4.122 11 C -0.091 4.091 12 C -0.190 4.190 13 C 0.200 3.800 14 N -0.742 5.742 15 C 0.180 3.820 16 C -0.201 4.201 17 C 0.163 3.837 18 N -0.540 5.540 19 C 0.289 3.711 20 N -0.541 5.541 21 C 0.161 3.839 22 C -0.189 4.189 23 C -0.090 4.090 24 H 0.264 0.736 25 H -0.002 1.002 26 H -0.004 1.004 27 H 0.107 0.893 28 H 0.135 0.865 29 H 0.402 0.598 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.187 0.813 33 H 0.219 0.781 34 H 0.184 0.816 35 H 0.142 0.858 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.974 -19.888 -2.305 25.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.562 4.562 8 H 0.071 0.929 9 C 0.025 3.975 10 C -0.124 4.124 11 C -0.110 4.110 12 C -0.212 4.212 13 C 0.098 3.902 14 N -0.374 5.374 15 C 0.055 3.945 16 C -0.206 4.206 17 C -0.003 4.003 18 N -0.254 5.254 19 C 0.002 3.998 20 N -0.255 5.255 21 C -0.004 4.004 22 C -0.211 4.211 23 C -0.109 4.109 24 H 0.073 0.927 25 H 0.016 0.984 26 H 0.014 0.986 27 H 0.126 0.874 28 H 0.153 0.847 29 H 0.237 0.763 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.204 0.796 33 H 0.235 0.765 34 H 0.201 0.799 35 H 0.160 0.840 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 15.526 -20.595 -2.328 25.896 hybrid contribution -0.611 1.709 0.243 1.831 sum 14.914 -18.886 -2.085 24.155 Atomic orbital electron populations 1.70094 1.07693 1.27786 1.51757 1.25958 0.95772 1.03138 0.94822 0.85452 0.78600 0.78493 0.78553 1.19658 1.20584 1.19021 1.21461 0.93053 0.91476 1.50255 0.92850 1.17991 0.92875 0.91455 0.95176 1.20136 1.00611 0.97628 0.93993 1.20814 0.97160 0.95928 0.97111 1.20640 1.02931 1.00391 0.97234 1.17583 0.90546 0.88807 0.93218 1.44415 1.48900 1.36239 1.07860 1.20030 0.95457 0.92443 0.86549 1.21614 0.96714 0.97173 1.05085 1.23621 1.00950 0.87822 0.87911 1.68558 1.04579 1.37682 1.14570 1.25575 0.90817 0.93795 0.89589 1.68559 1.40855 1.01430 1.14606 1.23603 0.89443 0.99406 0.87990 1.20704 1.02770 1.00334 0.97272 1.20857 0.97066 0.95956 0.97020 0.92699 0.98402 0.98561 0.87446 0.84705 0.76336 0.90221 0.89921 0.79644 0.76469 0.79877 0.84012 0.87181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.96 44.86 29.54 68.60 2.03 46.88 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.52 -30.57 9.09 25.60 0.23 -30.34 16 8 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.06 3.41 5.10 29.10 0.15 3.56 16 10 C -0.12 -5.45 5.07 -19.84 -0.10 -5.55 16 11 C -0.09 -3.58 9.69 22.25 0.22 -3.36 16 12 C -0.19 -5.80 9.90 22.40 0.22 -5.57 16 13 C 0.20 5.35 6.65 38.22 0.25 5.61 16 14 N -0.74 -13.33 5.73 -343.12 -1.96 -15.30 16 15 C 0.18 2.35 5.08 85.63 0.44 2.79 16 16 C -0.20 -2.53 5.28 -19.69 -0.10 -2.63 16 17 C 0.16 2.17 11.01 84.70 0.93 3.10 16 18 N -0.54 -8.68 10.44 -200.05 -2.09 -10.77 16 19 C 0.29 4.22 12.29 180.88 2.22 6.45 16 20 N -0.54 -8.86 10.44 -200.05 -2.09 -10.95 16 21 C 0.16 2.22 11.01 84.70 0.93 3.15 16 22 C -0.19 -5.54 9.31 22.40 0.21 -5.33 16 23 C -0.09 -3.46 9.69 22.25 0.22 -3.25 16 24 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 25 H 0.00 -0.14 8.08 -2.39 -0.02 -0.16 16 26 H 0.00 -0.23 8.08 -2.39 -0.02 -0.25 16 27 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 28 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 29 H 0.40 6.39 8.48 -92.71 -0.79 5.61 16 30 H 0.08 0.99 7.90 -2.39 -0.02 0.97 16 31 H 0.08 0.97 7.92 -2.39 -0.02 0.96 16 32 H 0.19 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.22 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.14 3.19 6.73 -2.91 -0.02 3.17 16 36 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -70.51 316.98 2.75 -67.76 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.31 Total: 10.20 kcal Atomic # 6 Polarization: -37.16 SS G_CDS: 6.28 Total: -30.88 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -5.86 Total: -93.96 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -70.51 2.75 -67.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167261389.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.212 kcal (2) G-P(sol) polarization free energy of solvation -70.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds