Wall clock time and date at job start Mon Mar 30 2020 01:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36359 * 119.91804 * 2 1 4 4 C 1.40870 * 119.83448 * 180.29437 * 3 2 1 5 5 C 1.41141 * 120.15311 * 179.73973 * 4 3 2 6 6 H 1.07998 * 120.00160 * 334.53153 * 5 4 3 7 7 C 1.39871 * 119.99561 * 154.53579 * 5 4 3 8 8 N 1.30898 * 120.00064 * 343.03238 * 7 5 4 9 9 Si 1.86800 * 119.99829 * 163.04222 * 7 5 4 10 10 H 1.48495 * 109.47387 * 59.99488 * 9 7 5 11 11 H 1.48501 * 109.46856 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46968 * 299.99412 * 9 7 5 13 13 C 1.40901 * 119.69224 * 359.72395 * 4 3 2 14 14 C 1.36328 * 119.82994 * 359.97438 * 13 4 3 15 15 C 1.39545 * 119.92054 * 179.75953 * 2 1 3 16 16 N 1.38858 * 119.84154 * 0.02562 * 15 2 1 17 17 C 1.46494 * 119.99979 * 179.72286 * 16 15 2 18 18 C 1.50707 * 109.47179 * 179.97438 * 17 16 15 19 19 C 1.38594 * 120.79843 * 269.97677 * 18 17 16 20 20 N 1.32335 * 119.10529 * 180.02562 * 19 18 17 21 21 C 1.31791 * 120.81487 * 359.97438 * 20 19 18 22 22 N 1.31796 * 121.76054 * 0.02562 * 21 20 19 23 23 C 1.32331 * 120.81335 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.46894 * 270.24067 * 1 2 3 25 25 H 1.08999 * 109.46987 * 30.23729 * 1 2 3 26 26 H 1.08991 * 109.46937 * 150.23908 * 1 2 3 27 27 H 1.08001 * 120.08601 * 0.02562 * 3 2 1 28 28 H 0.97001 * 119.99917 * 180.02562 * 8 7 5 29 29 H 1.07997 * 120.08657 * 179.97438 * 13 4 3 30 30 H 1.08002 * 119.91615 * 180.02562 * 14 13 4 31 31 H 0.97001 * 119.99542 * 359.71783 * 16 15 2 32 32 H 1.08997 * 109.47301 * 59.99632 * 17 16 15 33 33 H 1.09003 * 109.47545 * 299.99315 * 17 16 15 34 34 H 1.08007 * 120.45065 * 0.04488 * 19 18 17 35 35 H 1.08001 * 119.12282 * 179.97438 * 21 20 19 36 36 H 1.08004 * 120.45199 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1819 0.0000 4 6 3.5958 1.1798 -0.0063 5 6 4.3065 2.3992 -0.0119 6 1 3.8472 3.2902 -0.4138 7 6 5.6059 2.4536 0.5031 8 7 6.0433 1.4941 1.2785 9 14 6.7168 3.8959 0.0844 10 1 6.0905 5.1567 0.5569 11 1 8.0320 3.7171 0.7503 12 1 6.9108 3.9605 -1.3864 13 6 4.2920 -0.0452 -0.0066 14 6 3.5988 -1.2191 -0.0004 15 6 2.2031 -1.2094 0.0051 16 7 1.5038 -2.4091 0.0096 17 6 2.2310 -3.6808 0.0088 18 6 1.2469 -4.8222 0.0149 19 6 0.7889 -5.3579 1.2082 20 7 -0.0746 -6.3601 1.1745 21 6 -0.4986 -6.8476 0.0258 22 7 -0.0850 -6.3636 -1.1282 23 6 0.7781 -5.3615 -1.1727 24 1 -0.3633 0.0043 1.0277 25 1 -0.3633 0.8878 -0.5175 26 1 -0.3633 -0.8921 -0.5101 27 1 1.6472 2.1172 0.0004 28 1 6.9443 1.5320 1.6359 29 1 5.3719 -0.0542 -0.0118 30 1 4.1310 -2.1589 -0.0002 31 1 0.5338 -2.4050 0.0133 32 1 2.8608 -3.7398 0.8964 33 1 2.8540 -3.7426 -0.8835 34 1 1.1318 -4.9625 2.1531 35 1 -1.2031 -7.6661 0.0302 36 1 1.1129 -4.9691 -2.1216 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167266089.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:58 Heat of formation + Delta-G solvation = 67.182754 kcal Electronic energy + Delta-G solvation = -19046.068665 eV Core-core repulsion = 16108.735346 eV Total energy + Delta-G solvation = -2937.333319 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.17592 -38.32004 -35.59580 -33.87088 -33.73134 -31.90104 -31.30085 -28.86035 -26.54541 -25.82371 -24.74663 -24.05703 -22.78686 -20.16698 -20.01852 -17.80295 -17.71703 -16.89718 -16.48374 -15.45806 -14.98751 -14.66903 -14.05196 -13.83051 -13.82327 -13.56395 -13.51872 -12.86621 -12.70816 -12.55176 -11.90370 -11.76447 -11.53943 -11.08022 -11.00332 -10.99526 -10.89824 -10.70467 -10.45328 -9.79381 -9.66527 -9.44241 -9.30904 -9.24708 -8.59627 -7.39853 -6.65189 -6.42290 -4.07660 0.65386 0.88559 2.90217 3.01386 3.12708 3.15959 3.31406 3.54923 3.95152 4.03126 4.03451 4.33861 4.46449 4.64945 4.69486 4.76428 5.23675 5.52681 5.71207 5.76078 5.87831 5.93904 6.02354 6.18993 6.25328 6.30492 6.51367 6.73188 6.80245 6.91405 7.19455 7.34916 7.49787 7.66712 7.79932 7.86189 8.11923 8.23874 8.41523 8.60693 8.74715 9.03025 9.11128 10.35118 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038330 B = 0.003631 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.325852 B = 7708.861070 C = 8093.091569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.129 4.129 3 C -0.184 4.184 4 C 0.079 3.921 5 C -0.468 4.468 6 H 0.072 0.928 7 C 0.075 3.925 8 N -0.808 5.808 9 Si 0.903 3.097 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.266 1.266 13 C -0.125 4.125 14 C -0.161 4.161 15 C 0.093 3.907 16 N -0.757 5.757 17 C 0.186 3.814 18 C -0.197 4.197 19 C 0.162 3.838 20 N -0.522 5.522 21 C 0.287 3.713 22 N -0.523 5.523 23 C 0.162 3.838 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.092 0.908 28 H 0.277 0.723 29 H 0.118 0.882 30 H 0.089 0.911 31 H 0.385 0.615 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.170 0.830 35 H 0.194 0.806 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.901 -11.053 -1.787 13.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.133 4.133 3 C -0.204 4.204 4 C 0.076 3.924 5 C -0.499 4.499 6 H 0.090 0.910 7 C -0.140 4.140 8 N -0.435 5.435 9 Si 0.729 3.271 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.191 1.191 13 C -0.145 4.145 14 C -0.183 4.183 15 C -0.004 4.004 16 N -0.395 5.395 17 C 0.059 3.941 18 C -0.201 4.201 19 C -0.004 4.004 20 N -0.235 5.235 21 C -0.001 4.001 22 N -0.236 5.236 23 C -0.004 4.004 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.110 0.890 28 H 0.087 0.913 29 H 0.136 0.864 30 H 0.107 0.893 31 H 0.219 0.781 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.187 0.813 35 H 0.211 0.789 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.176 -11.979 -1.638 14.059 hybrid contribution 0.869 1.312 -0.040 1.574 sum -6.307 -10.667 -1.678 12.505 Atomic orbital electron populations 1.20485 0.94091 1.00374 1.00211 1.18630 0.93351 0.92290 1.09013 1.20453 0.94269 0.94837 1.10877 1.17478 0.90621 0.93219 0.91079 1.19342 0.98105 0.95998 1.36414 0.90985 1.25789 0.98384 0.97005 0.92836 1.69835 1.17795 1.32371 1.23504 0.86454 0.79044 0.81912 0.79726 1.19276 1.20577 1.19081 1.20928 0.99676 0.91075 1.02838 1.20069 0.91462 0.97537 1.09248 1.17086 0.90803 0.83983 1.08512 1.43888 1.06534 1.01403 1.87689 1.19767 0.91556 0.80843 1.01908 1.21921 1.01813 1.00784 0.95612 1.23281 0.89254 0.89269 0.98565 1.68470 1.12123 1.11738 1.31214 1.24994 0.95276 0.96919 0.82884 1.68467 1.12360 1.11832 1.30919 1.23267 0.89247 0.89298 0.98614 0.93203 0.92821 0.93845 0.89014 0.91250 0.86395 0.89316 0.78114 0.91884 0.91954 0.81315 0.78901 0.81353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.61 9.55 36.01 0.34 -1.27 16 2 C -0.13 -2.76 5.86 -104.81 -0.61 -3.37 16 3 C -0.18 -4.44 9.37 -39.26 -0.37 -4.80 16 4 C 0.08 2.08 5.57 -106.79 -0.59 1.49 16 5 C -0.47 -12.49 9.03 -37.87 -0.34 -12.83 16 6 H 0.07 1.86 7.90 -52.49 -0.41 1.45 16 7 C 0.08 1.91 5.15 -17.34 -0.09 1.82 16 8 N -0.81 -21.08 10.96 55.54 0.61 -20.47 16 9 Si 0.90 18.99 29.59 -169.99 -5.03 13.96 16 10 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 11 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 13 C -0.13 -3.18 8.63 -39.26 -0.34 -3.52 16 14 C -0.16 -3.59 9.23 -39.77 -0.37 -3.95 16 15 C 0.09 1.90 6.65 -83.69 -0.56 1.35 16 16 N -0.76 -12.13 5.59 -59.68 -0.33 -12.47 16 17 C 0.19 2.43 5.06 -5.19 -0.03 2.41 16 18 C -0.20 -2.23 5.28 -104.35 -0.55 -2.79 16 19 C 0.16 1.82 11.01 -17.20 -0.19 1.63 16 20 N -0.52 -6.10 10.44 -14.58 -0.15 -6.25 16 21 C 0.29 3.04 12.28 -92.16 -1.13 1.91 16 22 N -0.52 -6.05 10.44 -14.58 -0.15 -6.20 16 23 C 0.16 1.79 11.01 -17.20 -0.19 1.60 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 26 H 0.04 0.66 6.53 -51.93 -0.34 0.32 16 27 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 28 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 29 H 0.12 3.12 6.19 -52.49 -0.32 2.80 16 30 H 0.09 1.76 6.68 -52.49 -0.35 1.41 16 31 H 0.38 5.78 6.42 -40.82 -0.26 5.51 16 32 H 0.06 0.84 7.89 -51.93 -0.41 0.43 16 33 H 0.06 0.81 7.89 -51.93 -0.41 0.40 16 34 H 0.17 1.64 8.06 -52.48 -0.42 1.22 16 35 H 0.19 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.17 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 308.28 15.07 4.65 4.65 Total: -1.00 -28.69 308.28 -9.61 -38.29 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -4.18 Total: 8.82 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -5.01 Total: -20.33 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.03 Total: -45.39 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.69 -9.61 -38.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167266089.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.477 kcal (2) G-P(sol) polarization free energy of solvation -28.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds