Wall clock time and date at job start Mon Mar 30 2020 01:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36359 * 119.91804 * 2 1 4 4 C 1.40870 * 119.83448 * 180.29437 * 3 2 1 5 5 C 1.41141 * 120.15311 * 179.73973 * 4 3 2 6 6 H 1.07998 * 120.00160 * 334.53153 * 5 4 3 7 7 C 1.39871 * 119.99561 * 154.53579 * 5 4 3 8 8 N 1.30898 * 120.00064 * 343.03238 * 7 5 4 9 9 Si 1.86800 * 119.99829 * 163.04222 * 7 5 4 10 10 H 1.48495 * 109.47387 * 59.99488 * 9 7 5 11 11 H 1.48501 * 109.46856 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46968 * 299.99412 * 9 7 5 13 13 C 1.40901 * 119.69224 * 359.72395 * 4 3 2 14 14 C 1.36328 * 119.82994 * 359.97438 * 13 4 3 15 15 C 1.39545 * 119.92054 * 179.75953 * 2 1 3 16 16 N 1.38858 * 119.84154 * 0.02562 * 15 2 1 17 17 C 1.46494 * 119.99979 * 179.72286 * 16 15 2 18 18 C 1.50707 * 109.47179 * 179.97438 * 17 16 15 19 19 C 1.38594 * 120.79843 * 269.97677 * 18 17 16 20 20 N 1.32335 * 119.10529 * 180.02562 * 19 18 17 21 21 C 1.31791 * 120.81487 * 359.97438 * 20 19 18 22 22 N 1.31796 * 121.76054 * 0.02562 * 21 20 19 23 23 C 1.32331 * 120.81335 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.46894 * 270.24067 * 1 2 3 25 25 H 1.08999 * 109.46987 * 30.23729 * 1 2 3 26 26 H 1.08991 * 109.46937 * 150.23908 * 1 2 3 27 27 H 1.08001 * 120.08601 * 0.02562 * 3 2 1 28 28 H 0.97001 * 119.99917 * 180.02562 * 8 7 5 29 29 H 1.07997 * 120.08657 * 179.97438 * 13 4 3 30 30 H 1.08002 * 119.91615 * 180.02562 * 14 13 4 31 31 H 0.97001 * 119.99542 * 359.71783 * 16 15 2 32 32 H 1.08997 * 109.47301 * 59.99632 * 17 16 15 33 33 H 1.09003 * 109.47545 * 299.99315 * 17 16 15 34 34 H 1.08007 * 120.45065 * 0.04488 * 19 18 17 35 35 H 1.08001 * 119.12282 * 179.97438 * 21 20 19 36 36 H 1.08004 * 120.45199 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1819 0.0000 4 6 3.5958 1.1798 -0.0063 5 6 4.3065 2.3992 -0.0119 6 1 3.8472 3.2902 -0.4138 7 6 5.6059 2.4536 0.5031 8 7 6.0433 1.4941 1.2785 9 14 6.7168 3.8959 0.0844 10 1 6.0905 5.1567 0.5569 11 1 8.0320 3.7171 0.7503 12 1 6.9108 3.9605 -1.3864 13 6 4.2920 -0.0452 -0.0066 14 6 3.5988 -1.2191 -0.0004 15 6 2.2031 -1.2094 0.0051 16 7 1.5038 -2.4091 0.0096 17 6 2.2310 -3.6808 0.0088 18 6 1.2469 -4.8222 0.0149 19 6 0.7889 -5.3579 1.2082 20 7 -0.0746 -6.3601 1.1745 21 6 -0.4986 -6.8476 0.0258 22 7 -0.0850 -6.3636 -1.1282 23 6 0.7781 -5.3615 -1.1727 24 1 -0.3633 0.0043 1.0277 25 1 -0.3633 0.8878 -0.5175 26 1 -0.3633 -0.8921 -0.5101 27 1 1.6472 2.1172 0.0004 28 1 6.9443 1.5320 1.6359 29 1 5.3719 -0.0542 -0.0118 30 1 4.1310 -2.1589 -0.0002 31 1 0.5338 -2.4050 0.0133 32 1 2.8608 -3.7398 0.8964 33 1 2.8540 -3.7426 -0.8835 34 1 1.1318 -4.9625 2.1531 35 1 -1.2031 -7.6661 0.0302 36 1 1.1129 -4.9691 -2.1216 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167266089.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:58 Heat of formation + Delta-G solvation = 51.721304 kcal Electronic energy + Delta-G solvation = -19046.739124 eV Core-core repulsion = 16108.735346 eV Total energy + Delta-G solvation = -2938.003778 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.03226 -39.99074 -37.04409 -35.33755 -34.71847 -33.28754 -32.90008 -30.51838 -27.77743 -27.47118 -25.69191 -25.59343 -23.89303 -21.83038 -21.73412 -18.75135 -18.58629 -18.58344 -18.01668 -16.85646 -16.72007 -15.67819 -15.46031 -15.10131 -14.97348 -14.61465 -14.52037 -14.44962 -14.15645 -14.00800 -13.56541 -13.48070 -13.17890 -12.74223 -12.61477 -12.35725 -12.17778 -11.85939 -11.83668 -11.48260 -11.18346 -11.05943 -10.57930 -10.37554 -10.18346 -9.19915 -8.51191 -8.11218 -5.99524 -0.19965 0.03972 1.14139 1.19199 1.40802 1.51162 1.60589 2.28346 2.63902 2.85499 3.09019 3.21982 3.22238 3.61058 3.68727 3.81731 3.88090 4.37533 4.42811 4.47588 4.64217 4.67094 4.75648 4.92055 4.98624 5.04094 5.11484 5.13820 5.33249 5.37604 5.54710 5.72086 5.88139 5.91248 6.01249 6.22841 6.43659 6.68054 6.88192 7.03481 7.11081 7.12838 7.30362 8.50190 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038330 B = 0.003631 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.325852 B = 7708.861070 C = 8093.091569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.140 4.140 3 C -0.196 4.196 4 C 0.039 3.961 5 C -0.508 4.508 6 H 0.065 0.935 7 C 0.033 3.967 8 N -0.841 5.841 9 Si 0.974 3.026 10 H -0.264 1.264 11 H -0.270 1.270 12 H -0.264 1.264 13 C -0.147 4.147 14 C -0.170 4.170 15 C 0.114 3.886 16 N -0.746 5.746 17 C 0.187 3.813 18 C -0.198 4.198 19 C 0.161 3.839 20 N -0.537 5.537 21 C 0.288 3.712 22 N -0.537 5.537 23 C 0.163 3.837 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.281 0.719 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.394 0.606 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.181 0.819 35 H 0.223 0.777 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.171 -12.455 -2.055 15.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.144 4.144 3 C -0.216 4.216 4 C 0.036 3.964 5 C -0.539 4.539 6 H 0.083 0.917 7 C -0.179 4.179 8 N -0.469 5.469 9 Si 0.796 3.204 10 H -0.188 1.188 11 H -0.195 1.195 12 H -0.188 1.188 13 C -0.167 4.167 14 C -0.192 4.192 15 C 0.016 3.984 16 N -0.383 5.383 17 C 0.062 3.938 18 C -0.203 4.203 19 C -0.005 4.005 20 N -0.251 5.251 21 C 0.001 3.999 22 N -0.250 5.250 23 C -0.003 4.003 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.129 0.871 31 H 0.229 0.771 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.198 0.802 35 H 0.239 0.761 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -8.482 -13.423 -1.906 15.992 hybrid contribution 1.087 1.537 0.040 1.883 sum -7.395 -11.886 -1.866 14.123 Atomic orbital electron populations 1.20488 0.90701 1.01949 1.01441 1.19069 0.95919 0.91594 1.07857 1.20638 0.93748 0.96170 1.11070 1.17796 0.91928 0.93665 0.93003 1.19564 0.99744 0.96224 1.38394 0.91682 1.26558 0.99265 0.99826 0.92213 1.69902 1.18333 1.34253 1.24453 0.85384 0.77215 0.78414 0.79406 1.18825 1.19483 1.18815 1.20845 0.98938 0.92150 1.04758 1.20252 0.92490 0.97383 1.09049 1.17170 0.90444 0.85574 1.05258 1.43913 1.07001 1.01017 1.86338 1.19817 0.91873 0.79940 1.02217 1.21637 1.02110 1.00598 0.95946 1.23520 0.88851 0.89037 0.99061 1.68550 1.12647 1.12146 1.31745 1.25623 0.94944 0.97010 0.82360 1.68554 1.12866 1.12232 1.31365 1.23539 0.88708 0.88951 0.99131 0.91985 0.92052 0.91559 0.89035 0.90823 0.88459 0.87136 0.77069 0.91753 0.91365 0.80208 0.76076 0.79943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.79 9.55 71.24 0.68 -2.11 16 2 C -0.14 -5.83 5.86 -19.99 -0.12 -5.95 16 3 C -0.20 -9.62 9.37 22.48 0.21 -9.41 16 4 C 0.04 2.13 5.57 -21.27 -0.12 2.01 16 5 C -0.51 -28.41 9.03 23.38 0.21 -28.20 16 6 H 0.06 3.55 7.90 -2.91 -0.02 3.52 16 7 C 0.03 1.74 5.15 85.23 0.44 2.18 16 8 N -0.84 -45.53 10.96 21.82 0.24 -45.29 16 9 Si 0.97 39.99 29.59 68.60 2.03 42.02 16 10 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 11 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 12 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 13 C -0.15 -7.71 8.63 22.48 0.19 -7.51 16 14 C -0.17 -7.50 9.23 22.15 0.20 -7.29 16 15 C 0.11 4.53 6.65 38.67 0.26 4.78 16 16 N -0.75 -21.79 5.59 -342.71 -1.92 -23.71 16 17 C 0.19 4.41 5.06 85.64 0.43 4.84 16 18 C -0.20 -3.96 5.28 -19.69 -0.10 -4.07 16 19 C 0.16 3.21 11.01 84.70 0.93 4.14 16 20 N -0.54 -11.18 10.44 -200.04 -2.09 -13.27 16 21 C 0.29 5.30 12.28 180.88 2.22 7.53 16 22 N -0.54 -10.98 10.44 -200.04 -2.09 -13.07 16 23 C 0.16 3.15 11.01 84.70 0.93 4.08 16 24 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.06 1.84 8.08 -2.39 -0.02 1.82 16 26 H 0.07 1.76 6.53 -2.39 -0.02 1.75 16 27 H 0.09 4.33 8.06 -2.91 -0.02 4.31 16 28 H 0.28 13.92 8.30 -92.71 -0.77 13.15 16 29 H 0.10 5.42 6.19 -2.91 -0.02 5.40 16 30 H 0.11 4.28 6.68 -2.91 -0.02 4.26 16 31 H 0.39 10.40 6.42 -92.71 -0.59 9.81 16 32 H 0.06 1.56 7.89 -2.39 -0.02 1.54 16 33 H 0.07 1.59 7.89 -2.39 -0.02 1.57 16 34 H 0.18 3.05 8.06 -2.91 -0.02 3.03 16 35 H 0.22 2.51 8.06 -2.91 -0.02 2.49 16 36 H 0.18 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -63.55 308.28 3.06 -60.48 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: 0.51 Total: 27.80 kcal Atomic # 6 Polarization: -41.35 SS G_CDS: 6.38 Total: -34.97 kcal Atomic # 7 Polarization: -89.48 SS G_CDS: -5.85 Total: -95.33 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -63.55 3.06 -60.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167266089.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.206 kcal (2) G-P(sol) polarization free energy of solvation -63.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds