Wall clock time and date at job start Mon Mar 30 2020 01:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36356 * 120.08550 * 2 1 4 4 C 1.39547 * 120.16256 * 179.97438 * 3 2 1 5 5 N 1.38857 * 119.84103 * 180.02562 * 4 3 2 6 6 C 1.46496 * 119.99898 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47216 * 179.97438 * 6 5 4 8 8 C 1.38593 * 120.80349 * 269.72137 * 7 6 5 9 9 N 1.32333 * 119.10542 * 179.71696 * 8 7 6 10 10 C 1.31793 * 120.81677 * 0.56748 * 9 8 7 11 11 N 1.31798 * 121.75536 * 359.70718 * 10 9 8 12 12 C 1.32330 * 120.81828 * 0.02562 * 11 10 9 13 13 C 1.39589 * 120.31589 * 0.02562 * 4 3 2 14 14 C 1.36323 * 120.16140 * 359.97438 * 13 4 3 15 15 C 1.40877 * 120.07945 * 179.97438 * 2 1 3 16 16 C 1.41138 * 120.15282 * 359.74189 * 15 2 1 17 17 H 1.07997 * 120.00240 * 333.65759 * 16 15 2 18 18 C 1.39867 * 119.99467 * 153.65254 * 16 15 2 19 19 N 1.30904 * 120.00010 * 344.02340 * 18 16 15 20 20 Si 1.86801 * 119.99891 * 164.02635 * 18 16 15 21 21 H 1.48500 * 109.47158 * 89.99631 * 20 18 16 22 22 H 1.48501 * 109.47017 * 210.00300 * 20 18 16 23 23 H 1.48503 * 109.46793 * 329.99946 * 20 18 16 24 24 H 1.08994 * 109.47356 * 270.01741 * 1 2 3 25 25 H 1.09005 * 109.46689 * 30.01960 * 1 2 3 26 26 H 1.09005 * 109.47399 * 150.01456 * 1 2 3 27 27 H 1.07996 * 119.91671 * 359.96128 * 3 2 1 28 28 H 0.96998 * 120.00179 * 359.97438 * 5 4 3 29 29 H 1.09005 * 109.47215 * 299.99817 * 6 5 4 30 30 H 1.09007 * 109.47537 * 59.99751 * 6 5 4 31 31 H 1.08006 * 120.44771 * 359.97438 * 8 7 6 32 32 H 1.08009 * 119.12227 * 179.72721 * 10 9 8 33 33 H 1.07994 * 120.44812 * 180.02562 * 12 11 10 34 34 H 1.07996 * 119.92083 * 180.02562 * 13 4 3 35 35 H 1.08000 * 120.08080 * 180.02562 * 14 13 4 36 36 H 0.96999 * 119.99673 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5860 1.1817 0.0005 5 7 4.2753 2.3871 0.0011 6 6 5.7403 2.3931 0.0011 7 6 6.2368 3.8160 0.0011 8 6 6.4761 4.4841 -1.1893 9 7 6.9063 5.7350 -1.1502 10 6 7.1176 6.3405 0.0012 11 7 6.9063 5.7349 1.1525 12 6 6.4711 4.4858 1.1917 13 6 4.2922 -0.0223 0.0005 14 6 3.6220 -1.2095 0.0005 15 6 2.2131 -1.2191 0.0005 16 6 1.5123 -2.4442 0.0066 17 1 0.5183 -2.4957 0.4256 18 6 2.1054 -3.5915 -0.5302 19 7 3.1531 -3.4842 -1.3076 20 14 1.4022 -5.2771 -0.1379 21 1 0.3774 -5.6341 -1.1516 22 1 2.4922 -6.2854 -0.1594 23 1 0.7780 -5.2516 1.2093 24 1 -0.3634 0.0003 1.0276 25 1 -0.3633 0.8899 -0.5142 26 1 -0.3634 -0.8901 -0.5136 27 1 1.6506 2.1152 -0.0006 28 1 3.7869 3.2252 0.0007 29 1 6.1057 1.8804 0.8909 30 1 6.1058 1.8811 -0.8891 31 1 6.3097 3.9920 -2.1363 32 1 7.4731 7.3604 0.0012 33 1 6.2996 3.9954 2.1384 34 1 5.3721 -0.0134 0.0014 35 1 4.1698 -2.1403 0.0010 36 1 3.5641 -4.2799 -1.6802 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167266393.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:48 Heat of formation + Delta-G solvation = 50.600633 kcal Electronic energy + Delta-G solvation = -18951.919892 eV Core-core repulsion = 16013.867518 eV Total energy + Delta-G solvation = -2938.052374 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.03598 -39.88125 -37.18300 -35.14960 -34.72584 -33.63596 -32.43539 -30.45847 -28.29634 -27.01813 -25.68567 -25.60083 -23.67118 -22.71096 -20.84468 -18.97541 -18.60033 -18.59079 -17.85560 -16.80783 -16.59480 -15.70962 -15.50530 -15.09395 -14.86749 -14.66003 -14.55353 -14.49174 -14.23052 -14.07795 -13.48341 -13.30930 -12.87618 -12.72402 -12.69145 -12.44087 -12.16037 -11.86745 -11.84598 -11.39339 -11.12872 -11.02159 -10.58015 -10.32763 -10.14292 -9.15879 -8.48703 -8.12062 -5.95052 -0.20620 0.03265 1.13613 1.22645 1.42325 1.53532 1.61413 2.29882 2.63268 2.89655 3.08550 3.21289 3.21581 3.60462 3.68217 3.81909 3.88825 4.45090 4.49466 4.52001 4.63470 4.73429 4.79216 4.97592 4.99412 5.07302 5.16947 5.33328 5.35974 5.37026 5.54479 5.77767 5.88921 5.94653 5.99746 6.27068 6.47377 6.70340 6.90790 7.02750 7.14113 7.16051 7.32539 8.53794 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.037936 B = 0.003561 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.910894 B = 7861.495353 C = 8255.657194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.167 4.167 3 C -0.168 4.168 4 C 0.116 3.884 5 N -0.747 5.747 6 C 0.189 3.811 7 C -0.198 4.198 8 C 0.161 3.839 9 N -0.538 5.538 10 C 0.288 3.712 11 N -0.537 5.537 12 C 0.163 3.837 13 C -0.178 4.178 14 C -0.142 4.142 15 C 0.038 3.962 16 C -0.494 4.494 17 H 0.071 0.929 18 C 0.031 3.969 19 N -0.844 5.844 20 Si 0.970 3.030 21 H -0.267 1.267 22 H -0.272 1.272 23 H -0.262 1.262 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.112 0.888 28 H 0.393 0.607 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.181 0.819 32 H 0.223 0.777 33 H 0.184 0.816 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.876 12.270 2.143 13.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.169 4.169 3 C -0.190 4.190 4 C 0.017 3.983 5 N -0.383 5.383 6 C 0.063 3.937 7 C -0.203 4.203 8 C -0.005 4.005 9 N -0.251 5.251 10 C 0.001 3.999 11 N -0.250 5.250 12 C -0.003 4.003 13 C -0.200 4.200 14 C -0.162 4.162 15 C 0.035 3.965 16 C -0.526 4.526 17 H 0.089 0.911 18 C -0.180 4.180 19 N -0.473 5.473 20 Si 0.792 3.208 21 H -0.192 1.192 22 H -0.197 1.197 23 H -0.186 1.186 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.130 0.870 28 H 0.227 0.773 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.198 0.802 32 H 0.239 0.761 33 H 0.201 0.799 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.551 13.013 2.003 14.706 hybrid contribution -0.607 -1.593 -0.068 1.706 sum 5.944 11.419 1.936 13.019 Atomic orbital electron populations 1.20405 0.91856 1.01019 1.00572 1.19750 0.95894 0.92694 1.08543 1.19952 0.92121 0.96893 1.10053 1.17364 0.90641 0.85847 1.04406 1.43844 1.03689 1.04326 1.86422 1.19797 0.81251 0.90503 1.02140 1.21634 1.03901 0.98790 0.95943 1.23520 0.88365 0.89478 0.99110 1.68548 1.14302 1.10661 1.31602 1.25628 0.90770 1.01189 0.82352 1.68551 1.14247 1.10722 1.31530 1.23537 0.88265 0.89428 0.99083 1.20218 0.98153 0.91688 1.09985 1.20864 0.94778 0.96422 1.04185 1.17698 0.92280 0.92731 0.93809 1.19554 1.02502 0.93791 1.36717 0.91074 1.26551 0.94766 1.04225 0.92467 1.69915 1.20744 1.32086 1.24537 0.85389 0.78618 0.77148 0.79617 1.19201 1.19695 1.18569 0.92739 0.92081 0.93267 0.87006 0.77278 0.91423 0.91836 0.80202 0.76051 0.79943 0.87448 0.88578 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.30 9.39 71.24 0.67 -2.63 16 2 C -0.17 -7.86 5.90 -19.66 -0.12 -7.98 16 3 C -0.17 -7.01 9.46 22.15 0.21 -6.80 16 4 C 0.12 4.61 6.67 38.67 0.26 4.87 16 5 N -0.75 -22.05 5.69 -342.70 -1.95 -24.01 16 6 C 0.19 4.50 5.06 85.63 0.43 4.93 16 7 C -0.20 -4.02 5.28 -19.69 -0.10 -4.12 16 8 C 0.16 3.25 11.01 84.70 0.93 4.19 16 9 N -0.54 -11.34 10.44 -200.04 -2.09 -13.43 16 10 C 0.29 5.38 12.29 180.88 2.22 7.60 16 11 N -0.54 -11.15 10.44 -200.04 -2.09 -13.23 16 12 C 0.16 3.20 11.01 84.71 0.93 4.14 16 13 C -0.18 -7.88 9.23 22.15 0.20 -7.68 16 14 C -0.14 -7.42 8.62 22.48 0.19 -7.22 16 15 C 0.04 2.01 5.56 -21.27 -0.12 1.89 16 16 C -0.49 -26.75 8.09 23.38 0.19 -26.56 16 17 H 0.07 3.72 6.89 -2.91 -0.02 3.70 16 18 C 0.03 1.61 5.16 85.23 0.44 2.05 16 19 N -0.84 -45.36 10.97 21.82 0.24 -45.12 16 20 Si 0.97 39.58 29.59 68.60 2.03 41.61 16 21 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 22 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 23 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 24 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.06 2.11 8.08 -2.38 -0.02 2.10 16 26 H 0.05 2.09 6.79 -2.38 -0.02 2.08 16 27 H 0.11 4.02 8.06 -2.91 -0.02 4.00 16 28 H 0.39 10.50 8.46 -92.71 -0.78 9.71 16 29 H 0.07 1.60 7.89 -2.38 -0.02 1.58 16 30 H 0.06 1.56 7.89 -2.38 -0.02 1.54 16 31 H 0.18 3.10 8.06 -2.91 -0.02 3.07 16 32 H 0.22 2.56 8.06 -2.91 -0.02 2.54 16 33 H 0.18 2.95 8.06 -2.91 -0.02 2.92 16 34 H 0.11 4.19 6.68 -2.91 -0.02 4.17 16 35 H 0.10 5.33 6.23 -2.91 -0.02 5.31 16 36 H 0.28 13.77 8.30 -92.71 -0.77 13.00 16 Total: -1.00 -62.13 308.76 2.81 -59.32 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.32 Total: 28.18 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 6.35 Total: -33.32 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -5.89 Total: -95.78 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -62.13 2.81 -59.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167266393.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.920 kcal (2) G-P(sol) polarization free energy of solvation -62.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds