Wall clock time and date at job start Mon Mar 30 2020 01:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 119.99683 * 2 1 4 4 H 1.48494 * 109.47549 * 270.00347 * 3 2 1 5 5 H 1.48502 * 109.47288 * 30.00681 * 3 2 1 6 6 H 1.48505 * 109.47018 * 150.00094 * 3 2 1 7 7 C 1.37873 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99973 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00228 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47705 * 180.02562 * 9 7 2 11 11 C 1.38286 * 119.92623 * 89.99724 * 10 9 7 12 12 C 1.38113 * 120.07194 * 179.97438 * 11 10 9 13 13 C 1.38910 * 119.92620 * 0.02562 * 12 11 10 14 14 N 1.39674 * 120.07195 * 179.97438 * 13 12 11 15 15 C 1.46497 * 119.99987 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47563 * 180.02562 * 15 14 13 17 17 C 1.38601 * 120.07938 * 94.99529 * 16 15 14 18 18 C 1.38886 * 117.97154 * 180.02562 * 17 16 15 19 19 C 1.38611 * 117.96688 * 0.28215 * 18 17 16 20 20 N 1.31939 * 119.84392 * 359.43317 * 19 18 17 21 21 N 1.28349 * 122.18238 * 0.58944 * 20 19 18 22 22 C 1.38904 * 119.85137 * 0.25175 * 13 12 11 23 23 C 1.38108 * 119.92382 * 359.49508 * 22 13 12 24 24 H 0.97004 * 120.00564 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47267 * 59.99867 * 9 7 2 26 26 H 1.09001 * 109.47069 * 300.00363 * 9 7 2 27 27 H 1.07997 * 119.96154 * 0.02562 * 11 10 9 28 28 H 1.07998 * 120.03259 * 179.97438 * 12 11 10 29 29 H 0.97002 * 119.99980 * 359.97438 * 14 13 12 30 30 H 1.09006 * 109.47243 * 59.99380 * 15 14 13 31 31 H 1.09008 * 109.47083 * 300.00195 * 15 14 13 32 32 H 1.08001 * 121.01577 * 0.04954 * 17 16 15 33 33 H 1.08002 * 121.01435 * 180.02562 * 18 17 16 34 34 H 1.07997 * 120.07376 * 179.72169 * 19 18 17 35 35 H 1.07995 * 120.04271 * 179.72788 * 22 13 12 36 36 H 1.08005 * 119.96201 * 180.25352 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0005 11 6 2.6788 -4.1688 1.1979 12 6 3.5759 -5.2189 1.2015 13 6 4.0282 -5.7480 -0.0007 14 7 4.9358 -6.8097 -0.0007 15 6 5.4113 -7.3668 -1.2694 16 6 6.3737 -8.4933 -0.9941 17 6 5.9213 -9.8032 -0.9696 18 6 6.8457 -10.8069 -0.7112 19 6 8.1625 -10.4361 -0.4879 20 7 8.5032 -9.1624 -0.5364 21 7 7.6488 -8.2349 -0.7753 22 6 3.5802 -5.2152 -1.2027 23 6 2.6791 -4.1686 -1.1990 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5570 0.8897 27 1 2.3264 -3.7572 2.1322 28 1 3.9259 -5.6277 2.1378 29 1 5.2513 -7.1781 0.8394 30 1 5.9164 -6.5885 -1.8415 31 1 4.5634 -7.7452 -1.8406 32 1 4.8816 -10.0362 -1.1464 33 1 6.5469 -11.8443 -0.6810 34 1 8.9087 -11.1885 -0.2794 35 1 3.9332 -5.6213 -2.1390 36 1 2.3272 -3.7565 -2.1333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167324298.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:20 Heat of formation + Delta-G solvation = 79.167692 kcal Electronic energy + Delta-G solvation = -18459.527481 eV Core-core repulsion = 15522.713868 eV Total energy + Delta-G solvation = -2936.813613 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.42609 -38.88785 -36.07764 -33.69019 -33.43419 -32.54068 -30.33948 -30.06428 -27.51272 -25.64329 -25.02306 -23.43753 -22.76429 -21.58857 -19.99978 -17.87596 -17.50130 -17.10949 -16.25501 -16.14407 -15.32760 -15.02645 -14.68902 -14.17698 -14.11763 -13.78682 -13.50039 -13.37401 -12.79926 -12.63188 -12.45792 -11.86434 -11.28785 -11.21890 -11.18159 -10.70365 -10.65874 -10.51396 -10.35755 -10.09050 -10.07569 -9.77867 -9.39593 -9.02407 -8.35248 -8.22510 -6.79683 -5.95511 -3.99749 0.36462 0.40605 2.13325 2.36278 3.03065 3.35348 3.41331 3.46379 3.51317 3.78533 4.03129 4.13680 4.24762 4.46334 4.50877 4.68080 4.75102 5.08731 5.30289 5.36833 5.38093 5.53621 5.57218 5.67519 5.75102 6.04378 6.12757 6.33359 6.41503 6.72227 6.84185 7.30943 7.32195 7.39818 7.62584 7.79436 7.99564 8.00031 8.00795 8.31047 8.43369 9.06260 9.63808 11.12996 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.042737 B = 0.002959 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.007903 B = 9460.740748 C = 9724.929385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.508 4.508 8 H 0.056 0.944 9 C 0.053 3.947 10 C -0.082 4.082 11 C -0.080 4.080 12 C -0.190 4.190 13 C 0.181 3.819 14 N -0.752 5.752 15 C 0.187 3.813 16 C 0.057 3.943 17 C -0.103 4.103 18 C -0.120 4.120 19 C 0.038 3.962 20 N -0.243 5.243 21 N -0.225 5.225 22 C -0.193 4.193 23 C -0.081 4.081 24 H 0.261 0.739 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.117 0.883 28 H 0.108 0.892 29 H 0.394 0.606 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.173 0.827 35 H 0.109 0.891 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.877 -23.170 -1.868 25.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.546 4.546 8 H 0.075 0.925 9 C 0.016 3.984 10 C -0.083 4.083 11 C -0.098 4.098 12 C -0.212 4.212 13 C 0.082 3.918 14 N -0.386 5.386 15 C 0.060 3.940 16 C -0.088 4.088 17 C -0.132 4.132 18 C -0.149 4.149 19 C -0.126 4.126 20 N -0.084 5.084 21 N -0.068 5.068 22 C -0.216 4.216 23 C -0.099 4.099 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.135 0.865 28 H 0.126 0.874 29 H 0.227 0.773 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.171 0.829 33 H 0.170 0.830 34 H 0.190 0.810 35 H 0.127 0.873 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.974 -21.936 -1.941 25.066 hybrid contribution -0.475 -0.431 0.192 0.670 sum 11.499 -22.366 -1.749 25.210 Atomic orbital electron populations 1.69958 1.06013 1.26646 1.50978 1.25015 0.94858 0.99188 0.95394 0.86572 0.79888 0.83332 0.78129 1.20659 1.21256 1.19817 1.21138 0.93087 0.90087 1.50316 0.92525 1.18251 0.92510 0.89672 0.97988 1.20479 0.98992 0.97039 0.91814 1.20836 0.96060 0.94623 0.98312 1.20453 1.03945 1.01462 0.95313 1.17536 0.91192 0.88851 0.94178 1.44177 1.50515 1.37928 1.05969 1.19916 0.93650 0.92181 0.88213 1.22966 0.94258 0.95092 0.96464 1.22404 1.01982 0.92822 0.96003 1.22481 0.93952 1.01589 0.96880 1.24416 0.96341 0.96167 0.95662 1.73128 1.27586 0.99104 1.08554 1.73066 1.00394 1.26559 1.06755 1.20506 1.04021 1.01638 0.95391 1.20853 0.96067 0.94733 0.98273 0.92974 0.95662 0.95678 0.86513 0.87430 0.77259 0.90244 0.90567 0.82881 0.83003 0.80976 0.87262 0.86531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.50 9.09 -34.45 -0.31 -14.82 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.05 1.38 5.10 -29.04 -0.15 1.23 16 10 C -0.08 -1.80 5.07 -104.59 -0.53 -2.33 16 11 C -0.08 -1.58 9.69 -39.61 -0.38 -1.97 16 12 C -0.19 -3.23 9.90 -39.38 -0.39 -3.62 16 13 C 0.18 2.89 6.65 -83.79 -0.56 2.33 16 14 N -0.75 -9.44 5.73 -59.81 -0.34 -9.78 16 15 C 0.19 1.95 5.25 -5.20 -0.03 1.92 16 16 C 0.06 0.56 6.23 -82.42 -0.51 0.05 16 17 C -0.10 -0.70 9.85 -39.21 -0.39 -1.09 16 18 C -0.12 -0.65 10.21 -39.20 -0.40 -1.05 16 19 C 0.04 0.27 11.31 -17.37 -0.20 0.07 16 20 N -0.24 -2.74 11.50 30.55 0.35 -2.39 16 21 N -0.22 -2.78 11.43 33.59 0.38 -2.40 16 22 C -0.19 -3.24 9.31 -39.38 -0.37 -3.60 16 23 C -0.08 -1.59 9.69 -39.61 -0.38 -1.97 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.03 0.69 8.08 -51.93 -0.42 0.27 16 26 H 0.02 0.69 8.08 -51.93 -0.42 0.27 16 27 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 28 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 29 H 0.39 4.60 8.48 -40.82 -0.35 4.26 16 30 H 0.08 0.91 7.94 -51.93 -0.41 0.50 16 31 H 0.08 0.67 7.87 -51.92 -0.41 0.26 16 32 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.15 0.30 8.06 -52.49 -0.42 -0.12 16 34 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.11 1.54 6.73 -52.49 -0.35 1.19 16 36 H 0.12 2.23 8.06 -52.48 -0.42 1.81 16 LS Contribution 317.21 15.07 4.78 4.78 Total: -1.00 -33.14 317.21 -8.24 -41.38 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -4.44 Total: 0.93 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -4.69 Total: -23.32 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 1.13 Total: -40.70 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.14 -8.24 -41.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167324298.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.552 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds