Wall clock time and date at job start Mon Mar 30 2020 01:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 119.99683 * 2 1 4 4 H 1.48494 * 109.47549 * 270.00347 * 3 2 1 5 5 H 1.48502 * 109.47288 * 30.00681 * 3 2 1 6 6 H 1.48505 * 109.47018 * 150.00094 * 3 2 1 7 7 C 1.37873 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99973 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00228 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47705 * 180.02562 * 9 7 2 11 11 C 1.38286 * 119.92623 * 89.99724 * 10 9 7 12 12 C 1.38113 * 120.07194 * 179.97438 * 11 10 9 13 13 C 1.38910 * 119.92620 * 0.02562 * 12 11 10 14 14 N 1.39674 * 120.07195 * 179.97438 * 13 12 11 15 15 C 1.46497 * 119.99987 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47563 * 180.02562 * 15 14 13 17 17 C 1.38601 * 120.07938 * 94.99529 * 16 15 14 18 18 C 1.38886 * 117.97154 * 180.02562 * 17 16 15 19 19 C 1.38611 * 117.96688 * 0.28215 * 18 17 16 20 20 N 1.31939 * 119.84392 * 359.43317 * 19 18 17 21 21 N 1.28349 * 122.18238 * 0.58944 * 20 19 18 22 22 C 1.38904 * 119.85137 * 0.25175 * 13 12 11 23 23 C 1.38108 * 119.92382 * 359.49508 * 22 13 12 24 24 H 0.97004 * 120.00564 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47267 * 59.99867 * 9 7 2 26 26 H 1.09001 * 109.47069 * 300.00363 * 9 7 2 27 27 H 1.07997 * 119.96154 * 0.02562 * 11 10 9 28 28 H 1.07998 * 120.03259 * 179.97438 * 12 11 10 29 29 H 0.97002 * 119.99980 * 359.97438 * 14 13 12 30 30 H 1.09006 * 109.47243 * 59.99380 * 15 14 13 31 31 H 1.09008 * 109.47083 * 300.00195 * 15 14 13 32 32 H 1.08001 * 121.01577 * 0.04954 * 17 16 15 33 33 H 1.08002 * 121.01435 * 180.02562 * 18 17 16 34 34 H 1.07997 * 120.07376 * 179.72169 * 19 18 17 35 35 H 1.07995 * 120.04271 * 179.72788 * 22 13 12 36 36 H 1.08005 * 119.96201 * 180.25352 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0005 11 6 2.6788 -4.1688 1.1979 12 6 3.5759 -5.2189 1.2015 13 6 4.0282 -5.7480 -0.0007 14 7 4.9358 -6.8097 -0.0007 15 6 5.4113 -7.3668 -1.2694 16 6 6.3737 -8.4933 -0.9941 17 6 5.9213 -9.8032 -0.9696 18 6 6.8457 -10.8069 -0.7112 19 6 8.1625 -10.4361 -0.4879 20 7 8.5032 -9.1624 -0.5364 21 7 7.6488 -8.2349 -0.7753 22 6 3.5802 -5.2152 -1.2027 23 6 2.6791 -4.1686 -1.1990 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5570 0.8897 27 1 2.3264 -3.7572 2.1322 28 1 3.9259 -5.6277 2.1378 29 1 5.2513 -7.1781 0.8394 30 1 5.9164 -6.5885 -1.8415 31 1 4.5634 -7.7452 -1.8406 32 1 4.8816 -10.0362 -1.1464 33 1 6.5469 -11.8443 -0.6810 34 1 8.9087 -11.1885 -0.2794 35 1 3.9332 -5.6213 -2.1390 36 1 2.3272 -3.7565 -2.1333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167324298.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:20 Heat of formation + Delta-G solvation = 57.846390 kcal Electronic energy + Delta-G solvation = -18460.452042 eV Core-core repulsion = 15522.713868 eV Total energy + Delta-G solvation = -2937.738174 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.04018 -40.26630 -37.24161 -35.23627 -34.15884 -33.81851 -31.79869 -31.60199 -28.82102 -27.09884 -25.59418 -24.70213 -24.23058 -22.85901 -21.51520 -18.59739 -18.47081 -18.33023 -17.80713 -17.15945 -16.69115 -16.06764 -15.86010 -15.61129 -15.09827 -14.83579 -14.62623 -14.41765 -14.18169 -14.08139 -13.77594 -13.40268 -13.18184 -12.99665 -12.54066 -12.40202 -11.90141 -11.64809 -11.61191 -11.37568 -11.20624 -11.00819 -10.73468 -10.57231 -10.54172 -9.67216 -8.31367 -7.98043 -6.29090 -0.16045 -0.14794 0.68303 0.88506 1.40320 1.41320 1.53083 2.31179 2.42173 2.78099 2.96978 3.13494 3.16703 3.47241 3.68585 3.84195 4.03650 4.12590 4.23707 4.24549 4.46927 4.52151 4.64121 4.72935 4.78969 4.85261 5.00845 5.10214 5.20912 5.28212 5.37480 5.40801 5.55815 5.70926 5.81843 6.00703 6.24563 6.25536 6.52339 6.82496 6.84418 7.39170 7.69440 8.92647 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.042737 B = 0.002959 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.007903 B = 9460.740748 C = 9724.929385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.526 4.526 8 H 0.051 0.949 9 C 0.063 3.937 10 C -0.121 4.121 11 C -0.090 4.090 12 C -0.189 4.189 13 C 0.199 3.801 14 N -0.739 5.739 15 C 0.185 3.815 16 C 0.045 3.955 17 C -0.102 4.102 18 C -0.104 4.104 19 C 0.038 3.962 20 N -0.287 5.287 21 N -0.271 5.271 22 C -0.190 4.190 23 C -0.089 4.089 24 H 0.265 0.735 25 H -0.001 1.001 26 H -0.002 1.002 27 H 0.110 0.890 28 H 0.135 0.865 29 H 0.400 0.600 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.181 0.819 33 H 0.195 0.805 34 H 0.205 0.795 35 H 0.140 0.860 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.545 -25.773 -2.101 28.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.564 4.564 8 H 0.070 0.930 9 C 0.026 3.974 10 C -0.122 4.122 11 C -0.108 4.108 12 C -0.211 4.211 13 C 0.098 3.902 14 N -0.372 5.372 15 C 0.059 3.941 16 C -0.101 4.101 17 C -0.131 4.131 18 C -0.133 4.133 19 C -0.127 4.127 20 N -0.127 5.127 21 N -0.113 5.113 22 C -0.212 4.212 23 C -0.107 4.107 24 H 0.073 0.927 25 H 0.018 0.982 26 H 0.016 0.984 27 H 0.128 0.872 28 H 0.153 0.847 29 H 0.235 0.765 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.198 0.802 33 H 0.212 0.788 34 H 0.221 0.779 35 H 0.158 0.842 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.681 -24.568 -2.175 28.205 hybrid contribution -0.920 0.143 0.257 0.966 sum 12.761 -24.425 -1.918 27.624 Atomic orbital electron populations 1.70080 1.07610 1.27800 1.51715 1.25926 0.95775 1.03040 0.94802 0.85472 0.78581 0.78605 0.78557 1.19670 1.20410 1.19216 1.21455 0.93006 0.91568 1.50328 0.93045 1.17984 0.92824 0.91269 0.95322 1.20155 1.00584 0.97606 0.93903 1.20819 0.97037 0.95746 0.97229 1.20633 1.02983 1.00455 0.97072 1.17593 0.90429 0.88722 0.93482 1.44234 1.48966 1.36506 1.07489 1.20051 0.94620 0.92375 0.87039 1.22894 0.93506 0.96151 0.97514 1.22738 1.03623 0.91709 0.95010 1.22966 0.92695 1.03317 0.94336 1.25014 0.98217 0.95346 0.94095 1.73010 1.28323 1.00813 1.10589 1.72932 1.01644 1.28053 1.08660 1.20696 1.02857 1.00495 0.97133 1.20857 0.96936 0.95776 0.97173 0.92657 0.98233 0.98371 0.87177 0.84730 0.76478 0.91417 0.88103 0.80154 0.78770 0.77860 0.84212 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.60 13.29 21.44 0.28 -57.31 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.96 45.70 29.54 68.60 2.03 47.73 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.53 -31.18 9.09 25.60 0.23 -30.95 16 8 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 9 C 0.06 3.51 5.10 29.10 0.15 3.66 16 10 C -0.12 -5.54 5.07 -19.84 -0.10 -5.64 16 11 C -0.09 -3.63 9.69 22.25 0.22 -3.42 16 12 C -0.19 -6.19 9.90 22.40 0.22 -5.96 16 13 C 0.20 5.93 6.65 38.21 0.25 6.18 16 14 N -0.74 -16.52 5.73 -343.13 -1.96 -18.49 16 15 C 0.18 3.37 5.25 85.63 0.45 3.82 16 16 C 0.05 0.79 6.23 42.63 0.27 1.05 16 17 C -0.10 -1.00 9.85 22.51 0.22 -0.78 16 18 C -0.10 -0.68 10.21 22.51 0.23 -0.45 16 19 C 0.04 0.42 11.31 84.77 0.96 1.38 16 20 N -0.29 -6.14 11.50 -57.25 -0.66 -6.80 16 21 N -0.27 -6.42 11.43 -47.63 -0.54 -6.97 16 22 C -0.19 -6.04 9.31 22.40 0.21 -5.83 16 23 C -0.09 -3.55 9.69 22.25 0.22 -3.33 16 24 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 25 H 0.00 -0.04 8.08 -2.39 -0.02 -0.06 16 26 H 0.00 -0.12 8.08 -2.39 -0.02 -0.14 16 27 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 28 H 0.13 3.62 8.06 -2.91 -0.02 3.59 16 29 H 0.40 8.22 8.48 -92.71 -0.79 7.44 16 30 H 0.07 1.42 7.94 -2.38 -0.02 1.41 16 31 H 0.10 1.38 7.87 -2.38 -0.02 1.36 16 32 H 0.18 0.70 8.06 -2.91 -0.02 0.68 16 33 H 0.20 -0.42 8.06 -2.91 -0.02 -0.44 16 34 H 0.20 0.73 8.06 -2.91 -0.02 0.71 16 35 H 0.14 3.55 6.73 -2.91 -0.02 3.53 16 36 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -75.91 317.21 3.43 -72.47 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 0.31 Total: 9.05 kcal Atomic # 6 Polarization: -43.66 SS G_CDS: 3.98 Total: -39.68 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -2.88 Total: -89.57 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -75.91 3.43 -72.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167324298.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.319 kcal (2) G-P(sol) polarization free energy of solvation -75.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds