Wall clock time and date at job start Mon Mar 30 2020 01:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36358 * 120.08553 * 2 1 4 4 C 1.39547 * 120.16021 * 179.97438 * 3 2 1 5 5 N 1.38862 * 119.83863 * 179.97438 * 4 3 2 6 6 C 1.46496 * 119.99669 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47024 * 179.97438 * 6 5 4 8 8 C 1.38610 * 120.07462 * 94.72240 * 7 6 5 9 9 C 1.38885 * 117.96790 * 179.73975 * 8 7 6 10 10 C 1.38606 * 117.96518 * 0.52780 * 9 8 7 11 11 N 1.31938 * 119.85184 * 359.72662 * 10 9 8 12 12 N 1.28351 * 122.18069 * 0.02562 * 11 10 9 13 13 C 1.39582 * 120.31736 * 359.97438 * 4 3 2 14 14 C 1.36322 * 120.16371 * 359.95914 * 13 4 3 15 15 C 1.40877 * 120.07945 * 179.97438 * 2 1 3 16 16 C 1.41138 * 120.15282 * 359.74189 * 15 2 1 17 17 H 1.07997 * 120.00240 * 333.65759 * 16 15 2 18 18 C 1.39867 * 119.99467 * 153.65254 * 16 15 2 19 19 N 1.30896 * 120.00256 * 344.02243 * 18 16 15 20 20 Si 1.86800 * 119.99726 * 164.02338 * 18 16 15 21 21 H 1.48505 * 109.47047 * 90.00359 * 20 18 16 22 22 H 1.48502 * 109.47022 * 209.99933 * 20 18 16 23 23 H 1.48493 * 109.47418 * 330.00001 * 20 18 16 24 24 H 1.09003 * 109.47114 * 270.02340 * 1 2 3 25 25 H 1.09005 * 109.46689 * 30.02426 * 1 2 3 26 26 H 1.08998 * 109.47446 * 150.02319 * 1 2 3 27 27 H 1.07999 * 119.91557 * 359.97438 * 3 2 1 28 28 H 0.96994 * 119.99741 * 359.97438 * 5 4 3 29 29 H 1.09001 * 109.47293 * 299.99862 * 6 5 4 30 30 H 1.09001 * 109.47339 * 60.00261 * 6 5 4 31 31 H 1.07995 * 121.01638 * 0.02562 * 8 7 6 32 32 H 1.07995 * 121.01699 * 180.23018 * 9 8 7 33 33 H 1.08009 * 120.07510 * 179.75021 * 10 9 8 34 34 H 1.08004 * 119.91978 * 179.97438 * 13 4 3 35 35 H 1.08000 * 120.08222 * 180.02562 * 14 13 4 36 36 H 0.97007 * 120.00482 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5860 1.1817 0.0005 5 7 4.2753 2.3871 0.0000 6 6 5.7403 2.3931 0.0000 7 6 6.2368 3.8160 -0.0013 8 6 6.5589 4.4403 1.1936 9 6 7.0175 5.7502 1.1411 10 6 7.1140 6.3557 -0.1020 11 7 6.7795 5.6843 -1.1873 12 7 6.3603 4.4721 -1.1392 13 6 4.2922 -0.0223 0.0016 14 6 3.6220 -1.2095 0.0030 15 6 2.2131 -1.2191 0.0005 16 6 1.5123 -2.4442 0.0066 17 1 0.5183 -2.4957 0.4256 18 6 2.1054 -3.5915 -0.5302 19 7 3.1530 -3.4842 -1.3076 20 14 1.4022 -5.2771 -0.1378 21 1 0.3775 -5.6342 -1.1516 22 1 2.4922 -6.2854 -0.1594 23 1 0.7781 -5.2517 1.2093 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6506 2.1152 -0.0004 28 1 3.7869 3.2251 -0.0011 29 1 6.1057 1.8811 0.8902 30 1 6.1058 1.8804 -0.8898 31 1 6.4608 3.9225 2.1362 32 1 7.2860 6.2824 2.0417 33 1 7.4628 7.3749 -0.1820 34 1 5.3722 -0.0134 0.0016 35 1 4.1698 -2.1403 0.0043 36 1 3.5646 -4.2800 -1.6797 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167327937.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:46 Heat of formation + Delta-G solvation = 77.361633 kcal Electronic energy + Delta-G solvation = -18945.878592 eV Core-core repulsion = 16008.986663 eV Total energy + Delta-G solvation = -2936.891930 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.16579 -38.14540 -35.70490 -33.57505 -33.27836 -32.41139 -30.80649 -29.01746 -26.87717 -25.69198 -24.77372 -23.96175 -22.75760 -20.92448 -19.17970 -17.60268 -17.19173 -17.08634 -16.48555 -15.47708 -15.11008 -14.78880 -14.48215 -13.77204 -13.68992 -13.46315 -13.08045 -12.95090 -12.51745 -12.43454 -11.70052 -11.58047 -11.13548 -11.04641 -10.96696 -10.92053 -10.76241 -10.46826 -10.44240 -10.10458 -9.82106 -9.55318 -9.25209 -9.19123 -8.49607 -7.32943 -6.61780 -6.38601 -4.03056 0.60041 0.67170 2.91276 3.07093 3.15531 3.19967 3.32342 3.35228 3.82420 4.06285 4.23502 4.36476 4.47973 4.49283 4.75507 4.77443 5.03232 5.41555 5.56957 5.75787 5.77424 5.99920 6.04647 6.24890 6.27467 6.46753 6.72277 6.73480 6.88716 7.02345 7.23370 7.36414 7.59862 7.74615 7.81566 8.15197 8.29439 8.46851 8.56068 8.64855 8.78035 9.07465 9.15894 10.39510 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.037947 B = 0.003571 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.686475 B = 7838.180147 C = 8227.917773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.158 4.158 3 C -0.154 4.154 4 C 0.095 3.905 5 N -0.754 5.754 6 C 0.193 3.807 7 C 0.064 3.936 8 C -0.104 4.104 9 C -0.122 4.122 10 C 0.033 3.967 11 N -0.245 5.245 12 N -0.226 5.226 13 C -0.167 4.167 14 C -0.121 4.121 15 C 0.080 3.920 16 C -0.463 4.463 17 H 0.075 0.925 18 C 0.074 3.926 19 N -0.808 5.808 20 Si 0.901 3.099 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.263 1.263 24 H 0.041 0.959 25 H 0.036 0.964 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.385 0.615 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.171 0.829 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.765 12.669 6.017 15.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.160 4.160 3 C -0.176 4.176 4 C -0.002 4.002 5 N -0.391 5.391 6 C 0.066 3.934 7 C -0.080 4.080 8 C -0.133 4.133 9 C -0.151 4.151 10 C -0.131 4.131 11 N -0.086 5.086 12 N -0.069 5.069 13 C -0.188 4.188 14 C -0.141 4.141 15 C 0.077 3.923 16 C -0.494 4.494 17 H 0.093 0.907 18 C -0.141 4.141 19 N -0.435 5.435 20 Si 0.726 3.274 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.187 1.187 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.217 0.783 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.170 0.830 32 H 0.168 0.832 33 H 0.188 0.812 34 H 0.106 0.894 35 H 0.136 0.864 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.944 12.409 4.200 14.827 hybrid contribution -0.126 -0.338 1.685 1.723 sum 6.819 12.071 5.885 15.061 Atomic orbital electron populations 1.20415 0.93650 1.00549 0.99593 1.19304 0.94179 0.92691 1.09828 1.19639 0.91393 0.96473 1.10060 1.17266 0.90561 0.84618 1.07715 1.43655 1.01986 1.05677 1.87776 1.19791 0.83633 0.87669 1.02331 1.23135 0.95677 0.98749 0.90488 1.22414 0.95566 0.95186 1.00152 1.22443 0.97401 0.95410 0.99858 1.24357 0.96745 1.01873 0.90134 1.73107 1.06810 1.01345 1.27316 1.73069 1.07693 1.01302 1.24858 1.20070 0.97084 0.91972 1.09717 1.20905 0.94639 0.96029 1.02520 1.17358 0.91621 0.91602 0.91724 1.19354 1.02157 0.92566 1.35301 0.90726 1.25800 0.94424 1.00881 0.92990 1.69844 1.19274 1.31078 1.23321 0.86435 0.79267 0.81740 0.79923 1.19797 1.20390 1.18740 0.94027 0.94507 0.91893 0.89624 0.78316 0.91340 0.90996 0.82964 0.83218 0.81204 0.89387 0.86390 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.79 9.39 36.00 0.34 -1.45 16 2 C -0.16 -3.83 5.90 -104.30 -0.62 -4.44 16 3 C -0.15 -3.45 9.46 -39.77 -0.38 -3.82 16 4 C 0.09 2.05 6.67 -83.69 -0.56 1.49 16 5 N -0.75 -13.24 5.69 -59.67 -0.34 -13.58 16 6 C 0.19 2.88 5.22 -5.19 -0.03 2.85 16 7 C 0.06 0.85 6.23 -82.41 -0.51 0.34 16 8 C -0.10 -1.02 9.86 -39.20 -0.39 -1.40 16 9 C -0.12 -0.96 10.21 -39.21 -0.40 -1.36 16 10 C 0.03 0.31 11.31 -17.37 -0.20 0.11 16 11 N -0.24 -3.35 11.50 30.55 0.35 -3.00 16 12 N -0.23 -3.47 11.43 33.60 0.38 -3.08 16 13 C -0.17 -3.84 9.23 -39.77 -0.37 -4.20 16 14 C -0.12 -3.13 8.63 -39.26 -0.34 -3.47 16 15 C 0.08 2.12 5.56 -106.79 -0.59 1.53 16 16 C -0.46 -12.28 8.09 -37.87 -0.31 -12.59 16 17 H 0.07 1.91 6.89 -52.49 -0.36 1.55 16 18 C 0.07 1.89 5.16 -17.34 -0.09 1.80 16 19 N -0.81 -21.33 10.98 55.54 0.61 -20.72 16 20 Si 0.90 19.08 29.59 -169.99 -5.03 14.05 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 26 H 0.06 1.36 6.79 -51.93 -0.35 1.00 16 27 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.38 6.35 8.46 -40.82 -0.35 6.00 16 29 H 0.07 0.93 7.84 -51.93 -0.41 0.52 16 30 H 0.07 1.17 7.93 -51.93 -0.41 0.76 16 31 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 34 H 0.09 1.82 6.68 -52.48 -0.35 1.47 16 35 H 0.12 3.17 6.23 -52.49 -0.33 2.84 16 36 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 LS Contribution 309.01 15.07 4.66 4.66 Total: -1.00 -30.17 309.01 -8.02 -38.19 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -4.22 Total: 8.11 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -4.43 Total: -24.62 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 1.01 Total: -40.39 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.17 -8.02 -38.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167327937.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.552 kcal (2) G-P(sol) polarization free energy of solvation -30.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds