Wall clock time and date at job start Mon Mar 30 2020 01:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36358 * 120.08553 * 2 1 4 4 C 1.39547 * 120.16021 * 179.97438 * 3 2 1 5 5 N 1.38862 * 119.83863 * 179.97438 * 4 3 2 6 6 C 1.46496 * 119.99669 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47024 * 179.97438 * 6 5 4 8 8 C 1.38610 * 120.07462 * 94.72240 * 7 6 5 9 9 C 1.38885 * 117.96790 * 179.73975 * 8 7 6 10 10 C 1.38606 * 117.96518 * 0.52780 * 9 8 7 11 11 N 1.31938 * 119.85184 * 359.72662 * 10 9 8 12 12 N 1.28351 * 122.18069 * 0.02562 * 11 10 9 13 13 C 1.39582 * 120.31736 * 359.97438 * 4 3 2 14 14 C 1.36322 * 120.16371 * 359.95914 * 13 4 3 15 15 C 1.40877 * 120.07945 * 179.97438 * 2 1 3 16 16 C 1.41138 * 120.15282 * 359.74189 * 15 2 1 17 17 H 1.07997 * 120.00240 * 333.65759 * 16 15 2 18 18 C 1.39867 * 119.99467 * 153.65254 * 16 15 2 19 19 N 1.30896 * 120.00256 * 344.02243 * 18 16 15 20 20 Si 1.86800 * 119.99726 * 164.02338 * 18 16 15 21 21 H 1.48505 * 109.47047 * 90.00359 * 20 18 16 22 22 H 1.48502 * 109.47022 * 209.99933 * 20 18 16 23 23 H 1.48493 * 109.47418 * 330.00001 * 20 18 16 24 24 H 1.09003 * 109.47114 * 270.02340 * 1 2 3 25 25 H 1.09005 * 109.46689 * 30.02426 * 1 2 3 26 26 H 1.08998 * 109.47446 * 150.02319 * 1 2 3 27 27 H 1.07999 * 119.91557 * 359.97438 * 3 2 1 28 28 H 0.96994 * 119.99741 * 359.97438 * 5 4 3 29 29 H 1.09001 * 109.47293 * 299.99862 * 6 5 4 30 30 H 1.09001 * 109.47339 * 60.00261 * 6 5 4 31 31 H 1.07995 * 121.01638 * 0.02562 * 8 7 6 32 32 H 1.07995 * 121.01699 * 180.23018 * 9 8 7 33 33 H 1.08009 * 120.07510 * 179.75021 * 10 9 8 34 34 H 1.08004 * 119.91978 * 179.97438 * 13 4 3 35 35 H 1.08000 * 120.08222 * 180.02562 * 14 13 4 36 36 H 0.97007 * 120.00482 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5860 1.1817 0.0005 5 7 4.2753 2.3871 0.0000 6 6 5.7403 2.3931 0.0000 7 6 6.2368 3.8160 -0.0013 8 6 6.5589 4.4403 1.1936 9 6 7.0175 5.7502 1.1411 10 6 7.1140 6.3557 -0.1020 11 7 6.7795 5.6843 -1.1873 12 7 6.3603 4.4721 -1.1392 13 6 4.2922 -0.0223 0.0016 14 6 3.6220 -1.2095 0.0030 15 6 2.2131 -1.2191 0.0005 16 6 1.5123 -2.4442 0.0066 17 1 0.5183 -2.4957 0.4256 18 6 2.1054 -3.5915 -0.5302 19 7 3.1530 -3.4842 -1.3076 20 14 1.4022 -5.2771 -0.1378 21 1 0.3775 -5.6342 -1.1516 22 1 2.4922 -6.2854 -0.1594 23 1 0.7781 -5.2517 1.2093 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6506 2.1152 -0.0004 28 1 3.7869 3.2251 -0.0011 29 1 6.1057 1.8811 0.8902 30 1 6.1058 1.8804 -0.8898 31 1 6.4608 3.9225 2.1362 32 1 7.2860 6.2824 2.0417 33 1 7.4628 7.3749 -0.1820 34 1 5.3722 -0.0134 0.0016 35 1 4.1698 -2.1403 0.0043 36 1 3.5646 -4.2800 -1.6797 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167327937.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:46 Heat of formation + Delta-G solvation = 58.761711 kcal Electronic energy + Delta-G solvation = -18946.685146 eV Core-core repulsion = 16008.986663 eV Total energy + Delta-G solvation = -2937.698483 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.02408 -39.90204 -37.18389 -35.17725 -34.13215 -33.75395 -32.52781 -30.65843 -28.44830 -27.17968 -25.73332 -25.56602 -23.80999 -22.74865 -20.90170 -18.98853 -18.50456 -18.12856 -17.63428 -16.85050 -16.74258 -15.87864 -15.76415 -15.45789 -14.96160 -14.69948 -14.47298 -14.20101 -14.11961 -13.84652 -13.48790 -13.26688 -12.88507 -12.72359 -12.70412 -12.45556 -12.16367 -11.86301 -11.41002 -11.21503 -11.18258 -11.03572 -10.92547 -10.65695 -10.22568 -9.17737 -8.49153 -8.14966 -5.96262 -0.14944 -0.13281 1.12424 1.21089 1.42279 1.53922 1.61045 2.29891 2.42764 2.87547 2.88506 3.11079 3.50088 3.69534 3.83163 3.85888 4.05625 4.25372 4.44789 4.49575 4.52365 4.67897 4.78308 4.84815 4.97361 5.06955 5.11540 5.14638 5.29057 5.32258 5.35376 5.52639 5.75302 5.92941 5.96799 6.25671 6.45280 6.67653 6.87908 7.08976 7.14862 7.29840 7.70596 8.53774 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.037947 B = 0.003571 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.686475 B = 7838.180147 C = 8227.917773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.166 4.166 3 C -0.167 4.167 4 C 0.114 3.886 5 N -0.745 5.745 6 C 0.193 3.807 7 C 0.050 3.950 8 C -0.105 4.105 9 C -0.101 4.101 10 C 0.037 3.963 11 N -0.286 5.286 12 N -0.273 5.273 13 C -0.179 4.179 14 C -0.142 4.142 15 C 0.039 3.961 16 C -0.493 4.493 17 H 0.073 0.927 18 C 0.030 3.970 19 N -0.845 5.845 20 Si 0.973 3.027 21 H -0.267 1.267 22 H -0.272 1.272 23 H -0.260 1.260 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.112 0.888 28 H 0.392 0.608 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.177 0.823 32 H 0.198 0.802 33 H 0.209 0.791 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.103 14.875 7.763 18.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.168 4.168 3 C -0.189 4.189 4 C 0.016 3.984 5 N -0.380 5.380 6 C 0.067 3.933 7 C -0.096 4.096 8 C -0.134 4.134 9 C -0.130 4.130 10 C -0.128 4.128 11 N -0.126 5.126 12 N -0.115 5.115 13 C -0.201 4.201 14 C -0.162 4.162 15 C 0.036 3.964 16 C -0.525 4.525 17 H 0.091 0.909 18 C -0.181 4.181 19 N -0.474 5.474 20 Si 0.795 3.205 21 H -0.192 1.192 22 H -0.197 1.197 23 H -0.184 1.184 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.130 0.870 28 H 0.226 0.774 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.215 0.785 33 H 0.225 0.775 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.294 14.658 5.936 17.416 hybrid contribution -0.116 -0.726 1.186 1.395 sum 7.178 13.932 7.122 17.215 Atomic orbital electron populations 1.20403 0.91653 1.01030 1.00693 1.19755 0.95996 0.92570 1.08493 1.19942 0.91932 0.97007 1.10031 1.17376 0.90756 0.85600 1.04700 1.43679 1.03324 1.04547 1.86475 1.19816 0.81782 0.89603 1.02087 1.22876 0.97245 0.97812 0.91698 1.22702 0.94874 0.96147 0.99642 1.22963 0.94706 0.94394 1.00916 1.25044 0.94803 1.03100 0.89812 1.72995 1.08657 1.01186 1.29757 1.72935 1.09590 1.02557 1.26414 1.20211 0.98077 0.91760 1.10039 1.20857 0.94853 0.96272 1.04198 1.17704 0.92204 0.92793 0.93676 1.19560 1.02547 0.93680 1.36682 0.90857 1.26597 0.94738 1.04400 0.92397 1.69926 1.20794 1.32162 1.24516 0.85351 0.78583 0.76921 0.79676 1.19208 1.19705 1.18370 0.92501 0.92172 0.93174 0.87047 0.77429 0.89636 0.93035 0.80541 0.78477 0.77464 0.87674 0.88451 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.35 9.39 71.24 0.67 -2.68 16 2 C -0.17 -8.08 5.90 -19.66 -0.12 -8.19 16 3 C -0.17 -7.34 9.46 22.15 0.21 -7.13 16 4 C 0.11 4.88 6.67 38.67 0.26 5.14 16 5 N -0.74 -25.25 5.69 -342.71 -1.95 -27.20 16 6 C 0.19 5.62 5.22 85.63 0.45 6.07 16 7 C 0.05 1.25 6.23 42.63 0.27 1.51 16 8 C -0.10 -1.70 9.86 22.51 0.22 -1.48 16 9 C -0.10 -1.13 10.21 22.51 0.23 -0.90 16 10 C 0.04 0.57 11.31 84.76 0.96 1.53 16 11 N -0.29 -7.49 11.50 -57.25 -0.66 -8.15 16 12 N -0.27 -8.25 11.43 -47.62 -0.54 -8.80 16 13 C -0.18 -8.37 9.23 22.15 0.20 -8.16 16 14 C -0.14 -7.63 8.63 22.48 0.19 -7.43 16 15 C 0.04 2.14 5.56 -21.27 -0.12 2.02 16 16 C -0.49 -27.10 8.09 23.38 0.19 -26.91 16 17 H 0.07 3.87 6.89 -2.91 -0.02 3.85 16 18 C 0.03 1.57 5.16 85.23 0.44 2.01 16 19 N -0.85 -46.48 10.98 21.82 0.24 -46.24 16 20 Si 0.97 40.10 29.59 68.60 2.03 42.13 16 21 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 22 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 24 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.06 2.15 8.08 -2.38 -0.02 2.13 16 26 H 0.05 2.17 6.79 -2.39 -0.02 2.16 16 27 H 0.11 4.26 8.06 -2.91 -0.02 4.23 16 28 H 0.39 12.28 8.46 -92.71 -0.78 11.49 16 29 H 0.09 2.19 7.84 -2.39 -0.02 2.18 16 30 H 0.05 1.71 7.93 -2.39 -0.02 1.69 16 31 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.20 0.33 8.06 -2.91 -0.02 0.30 16 33 H 0.21 1.40 8.06 -2.91 -0.02 1.37 16 34 H 0.11 4.42 6.68 -2.91 -0.02 4.40 16 35 H 0.10 5.54 6.23 -2.91 -0.02 5.52 16 36 H 0.28 14.11 8.30 -92.70 -0.77 13.34 16 Total: -1.00 -69.41 309.01 3.49 -65.92 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.32 Total: 26.94 kcal Atomic # 6 Polarization: -48.65 SS G_CDS: 4.05 Total: -44.60 kcal Atomic # 7 Polarization: -87.47 SS G_CDS: -2.91 Total: -90.38 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -69.41 3.49 -65.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167327937.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.680 kcal (2) G-P(sol) polarization free energy of solvation -69.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds