Wall clock time and date at job start Mon Mar 30 2020 01:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35569 * 116.99597 * 2 1 4 4 N 1.32736 * 120.47482 * 0.27573 * 3 2 1 5 5 C 1.32453 * 120.66684 * 180.23243 * 4 3 2 6 6 N 1.38526 * 119.16596 * 179.75845 * 5 4 3 7 7 C 1.46498 * 119.99756 * 0.02562 * 6 5 4 8 8 C 1.52996 * 109.47059 * 179.72366 * 7 6 5 9 9 C 1.53003 * 109.47301 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47008 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00362 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99653 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00420 * 0.02562 * 12 10 9 14 14 Si 1.86810 * 119.99928 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47172 * 90.00092 * 14 12 10 16 16 H 1.48503 * 109.46928 * 209.99961 * 14 12 10 17 17 H 1.48499 * 109.46876 * 329.99803 * 14 12 10 18 18 N 1.32437 * 121.67042 * 359.48300 * 5 4 3 19 19 C 1.32493 * 120.90077 * 0.25257 * 18 5 4 20 20 C 1.50691 * 120.38213 * 179.97438 * 19 18 5 21 21 C 1.38363 * 119.23899 * 0.02562 * 19 18 5 22 22 F 1.35100 * 120.76588 * 180.02562 * 21 19 18 23 23 H 1.08998 * 109.46815 * 299.99466 * 1 2 3 24 24 H 1.08998 * 109.47110 * 60.00144 * 1 2 3 25 25 H 1.09004 * 109.46754 * 180.02562 * 1 2 3 26 26 H 0.97001 * 119.99799 * 179.72473 * 6 5 4 27 27 H 1.09004 * 109.46963 * 299.72162 * 7 6 5 28 28 H 1.08994 * 109.47567 * 59.72314 * 7 6 5 29 29 H 1.09004 * 109.47066 * 299.99732 * 8 7 6 30 30 H 1.09000 * 109.47665 * 59.99541 * 8 7 6 31 31 H 1.08990 * 109.47021 * 299.99845 * 9 8 7 32 32 H 1.09002 * 109.46620 * 60.00037 * 9 8 7 33 33 H 0.97000 * 120.00497 * 180.02562 * 13 12 10 34 34 H 1.08995 * 109.47379 * 90.00259 * 20 19 18 35 35 H 1.09004 * 109.47736 * 210.00811 * 20 19 18 36 36 H 1.09005 * 109.47190 * 330.00197 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0445 1.2080 0.0000 4 7 1.3307 2.3271 0.0055 5 6 1.9280 3.5093 0.0009 6 7 1.1527 4.6573 0.0018 7 6 -0.3086 4.5543 0.0083 8 6 -0.9188 5.9573 0.0149 9 6 -2.4450 5.8498 0.0211 10 6 -3.0459 7.2317 0.0282 11 1 -2.4036 8.0999 0.0279 12 6 -4.4158 7.3877 0.0340 13 7 -5.1981 6.3305 0.0339 14 14 -5.1608 9.1008 0.0421 15 1 -5.3637 9.5590 -1.3558 16 1 -6.4674 9.0690 0.7472 17 1 -4.2435 10.0361 0.7414 18 7 3.2476 3.6217 0.0009 19 6 4.0220 2.5467 0.0005 20 6 5.5222 2.6881 0.0000 21 6 3.4374 1.2926 -0.0004 22 9 4.1976 0.1758 -0.0003 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.5775 5.5294 0.0025 27 1 -0.6390 4.0185 -0.8816 28 1 -0.6308 4.0138 0.8983 29 1 -0.5883 6.4930 0.9048 30 1 -0.5966 6.4979 -0.8751 31 1 -2.7750 5.3143 -0.8690 32 1 -2.7674 5.3091 0.9109 33 1 -6.1619 6.4403 0.0376 34 1 5.8844 2.7221 1.0274 35 1 5.9674 1.8363 -0.5142 36 1 5.8003 3.6084 -0.5139 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168428208.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:40 Heat of formation + Delta-G solvation = -43.302349 kcal Electronic energy + Delta-G solvation = -19833.510487 eV Core-core repulsion = 16460.616950 eV Total energy + Delta-G solvation = -3372.893537 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.128 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.76900 -41.17331 -38.79026 -36.52817 -34.12972 -33.41612 -31.89333 -30.30046 -29.01124 -27.11411 -26.45070 -23.59580 -23.37874 -21.83103 -20.56300 -18.80886 -18.30313 -17.37581 -16.79232 -16.43327 -16.37529 -15.30744 -15.04701 -14.91403 -14.53911 -14.46002 -14.10817 -13.81440 -13.28472 -13.03989 -12.60870 -12.36276 -12.18648 -12.10542 -11.87166 -11.61811 -11.54936 -10.95392 -10.78486 -10.61324 -10.28324 -9.93275 -9.55056 -9.54138 -9.34411 -9.18473 -8.41610 -7.91136 -6.06529 -4.09516 0.90129 1.02885 2.58743 2.91709 3.28290 3.34872 3.37900 3.63805 3.84422 4.03674 4.40417 4.52421 4.78494 4.91768 5.15013 5.22465 5.29442 5.29671 5.41334 5.50556 5.61028 5.64959 5.68761 6.05961 6.08928 6.47102 6.52153 6.66197 6.80365 6.90120 7.10032 7.46897 7.57418 7.69234 7.91819 8.22511 8.33220 8.96916 9.55070 11.04735 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.032070 B = 0.003364 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.870767 B = 8321.943849 C = 9158.445990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.295 6.295 3 C 0.387 3.613 4 N -0.600 5.600 5 C 0.599 3.401 6 N -0.682 5.682 7 C 0.131 3.869 8 C -0.123 4.123 9 C 0.026 3.974 10 C -0.523 4.523 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 N -0.573 5.573 19 C 0.222 3.778 20 C -0.104 4.104 21 C -0.101 4.101 22 F -0.126 7.126 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.101 0.899 26 H 0.416 0.584 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.390 -10.625 -0.071 20.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.199 6.199 3 C 0.197 3.803 4 N -0.340 5.340 5 C 0.242 3.758 6 N -0.317 5.317 7 C 0.008 3.992 8 C -0.161 4.161 9 C -0.011 4.011 10 C -0.561 4.561 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 N -0.301 5.301 19 C 0.074 3.926 20 C -0.161 4.161 21 C -0.130 4.130 22 F -0.105 7.105 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.119 0.881 26 H 0.254 0.746 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 16.484 -10.208 -0.062 19.389 hybrid contribution -0.212 0.367 0.005 0.424 sum 16.272 -9.840 -0.058 19.016 Atomic orbital electron populations 1.23038 0.75898 1.03502 1.03487 1.86295 1.23996 1.23189 1.86382 1.19844 0.87738 0.85359 0.87407 1.67595 1.39877 0.97243 1.29300 1.18986 0.84734 0.85615 0.86460 1.44669 1.06662 1.04094 1.76244 1.21706 0.75409 1.00052 1.02015 1.21927 1.00248 0.92745 1.01181 1.19009 0.87036 0.97480 0.97616 1.21200 0.91505 0.92445 1.50982 0.92594 1.25021 0.97370 0.96813 0.95199 1.69956 1.04032 1.28771 1.50571 0.86577 0.78623 0.84575 0.78132 1.20631 1.21192 1.19847 1.67876 1.03914 1.32093 1.26238 1.21327 0.97585 0.85351 0.88324 1.20745 0.86753 1.04480 1.04148 1.17761 0.86556 0.84858 1.23824 1.91454 1.74435 1.49174 1.95412 0.91510 0.91516 0.88067 0.74583 0.91646 0.91651 0.92536 0.92535 0.96268 0.96265 0.92909 0.89168 0.89715 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.41 101.05 1.05 1.43 16 2 O -0.30 -3.99 10.40 -18.40 -0.19 -4.18 16 3 C 0.39 5.70 7.53 -16.67 -0.13 5.57 16 4 N -0.60 -9.35 8.53 -13.92 -0.12 -9.47 16 5 C 0.60 9.23 8.43 -322.76 -2.72 6.51 16 6 N -0.68 -10.12 5.71 -62.30 -0.36 -10.47 16 7 C 0.13 2.17 5.65 -4.04 -0.02 2.15 16 8 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 9 C 0.03 0.64 4.97 -27.88 -0.14 0.51 16 10 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 11 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 14 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 N -0.57 -8.16 10.39 -10.16 -0.11 -8.27 16 19 C 0.22 2.78 6.82 -82.27 -0.56 2.22 16 20 C -0.10 -0.86 10.05 36.00 0.36 -0.50 16 21 C -0.10 -1.38 7.32 -39.05 -0.29 -1.66 16 22 F -0.13 -1.65 16.49 2.25 0.04 -1.61 16 23 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 24 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 25 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.42 5.52 8.59 -40.82 -0.35 5.17 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.60 7.70 -51.93 -0.40 0.20 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 318.53 15.07 4.80 4.80 Total: -1.00 -30.67 318.53 -8.15 -38.82 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -4.94 Total: -0.86 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -2.99 Total: 0.61 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.16 Total: -53.78 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.19 Total: -4.18 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.67 -8.15 -38.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428208.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.480 kcal (2) G-P(sol) polarization free energy of solvation -30.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds