Wall clock time and date at job start Mon Mar 30 2020 01:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35569 * 116.99597 * 2 1 4 4 N 1.32736 * 120.47482 * 0.27573 * 3 2 1 5 5 C 1.32453 * 120.66684 * 180.23243 * 4 3 2 6 6 N 1.38526 * 119.16596 * 179.75845 * 5 4 3 7 7 C 1.46498 * 119.99756 * 0.02562 * 6 5 4 8 8 C 1.52996 * 109.47059 * 179.72366 * 7 6 5 9 9 C 1.53003 * 109.47301 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47008 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00362 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99653 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00420 * 0.02562 * 12 10 9 14 14 Si 1.86810 * 119.99928 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47172 * 90.00092 * 14 12 10 16 16 H 1.48503 * 109.46928 * 209.99961 * 14 12 10 17 17 H 1.48499 * 109.46876 * 329.99803 * 14 12 10 18 18 N 1.32437 * 121.67042 * 359.48300 * 5 4 3 19 19 C 1.32493 * 120.90077 * 0.25257 * 18 5 4 20 20 C 1.50691 * 120.38213 * 179.97438 * 19 18 5 21 21 C 1.38363 * 119.23899 * 0.02562 * 19 18 5 22 22 F 1.35100 * 120.76588 * 180.02562 * 21 19 18 23 23 H 1.08998 * 109.46815 * 299.99466 * 1 2 3 24 24 H 1.08998 * 109.47110 * 60.00144 * 1 2 3 25 25 H 1.09004 * 109.46754 * 180.02562 * 1 2 3 26 26 H 0.97001 * 119.99799 * 179.72473 * 6 5 4 27 27 H 1.09004 * 109.46963 * 299.72162 * 7 6 5 28 28 H 1.08994 * 109.47567 * 59.72314 * 7 6 5 29 29 H 1.09004 * 109.47066 * 299.99732 * 8 7 6 30 30 H 1.09000 * 109.47665 * 59.99541 * 8 7 6 31 31 H 1.08990 * 109.47021 * 299.99845 * 9 8 7 32 32 H 1.09002 * 109.46620 * 60.00037 * 9 8 7 33 33 H 0.97000 * 120.00497 * 180.02562 * 13 12 10 34 34 H 1.08995 * 109.47379 * 90.00259 * 20 19 18 35 35 H 1.09004 * 109.47736 * 210.00811 * 20 19 18 36 36 H 1.09005 * 109.47190 * 330.00197 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0445 1.2080 0.0000 4 7 1.3307 2.3271 0.0055 5 6 1.9280 3.5093 0.0009 6 7 1.1527 4.6573 0.0018 7 6 -0.3086 4.5543 0.0083 8 6 -0.9188 5.9573 0.0149 9 6 -2.4450 5.8498 0.0211 10 6 -3.0459 7.2317 0.0282 11 1 -2.4036 8.0999 0.0279 12 6 -4.4158 7.3877 0.0340 13 7 -5.1981 6.3305 0.0339 14 14 -5.1608 9.1008 0.0421 15 1 -5.3637 9.5590 -1.3558 16 1 -6.4674 9.0690 0.7472 17 1 -4.2435 10.0361 0.7414 18 7 3.2476 3.6217 0.0009 19 6 4.0220 2.5467 0.0005 20 6 5.5222 2.6881 0.0000 21 6 3.4374 1.2926 -0.0004 22 9 4.1976 0.1758 -0.0003 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.5775 5.5294 0.0025 27 1 -0.6390 4.0185 -0.8816 28 1 -0.6308 4.0138 0.8983 29 1 -0.5883 6.4930 0.9048 30 1 -0.5966 6.4979 -0.8751 31 1 -2.7750 5.3143 -0.8690 32 1 -2.7674 5.3091 0.9109 33 1 -6.1619 6.4403 0.0376 34 1 5.8844 2.7221 1.0274 35 1 5.9674 1.8363 -0.5142 36 1 5.8003 3.6084 -0.5139 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168428208.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:40 Heat of formation + Delta-G solvation = -62.248604 kcal Electronic energy + Delta-G solvation = -19834.332059 eV Core-core repulsion = 16460.616950 eV Total energy + Delta-G solvation = -3373.715109 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.128 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.81345 -42.25715 -39.82550 -37.83355 -35.68052 -34.78576 -33.49572 -31.61097 -29.93939 -28.47707 -27.74153 -25.18466 -24.55297 -23.03129 -22.19743 -19.94471 -19.37305 -18.49738 -18.41066 -17.85246 -17.55153 -16.51948 -16.44839 -16.27086 -16.02863 -15.58780 -15.31324 -14.84678 -14.29387 -14.16956 -14.03028 -13.70608 -13.56383 -13.30799 -13.09465 -12.84075 -12.64398 -12.63434 -12.48820 -12.37646 -11.73258 -11.48934 -11.24882 -11.20413 -10.71380 -10.54866 -10.44903 -9.05481 -8.19907 -6.30577 -0.14603 -0.07757 1.41944 1.42593 1.53098 1.55190 1.80528 2.41912 2.53309 2.81855 2.98852 3.14209 3.53636 3.71732 3.97929 4.14601 4.21654 4.32782 4.34623 4.55105 4.66051 4.71085 4.73653 4.84855 4.94629 5.00390 5.15626 5.26370 5.49234 5.57501 5.60527 5.71332 5.84268 5.99118 6.23048 6.34430 6.86343 7.10754 7.38867 8.91912 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.032070 B = 0.003364 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.870767 B = 8321.943849 C = 9158.445990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.302 6.302 3 C 0.373 3.627 4 N -0.617 5.617 5 C 0.588 3.412 6 N -0.679 5.679 7 C 0.151 3.849 8 C -0.105 4.105 9 C 0.028 3.972 10 C -0.542 4.542 11 H 0.063 0.937 12 C 0.000 4.000 13 N -0.933 5.933 14 Si 0.964 3.036 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.262 1.262 18 N -0.577 5.577 19 C 0.224 3.776 20 C -0.101 4.101 21 C -0.107 4.107 22 F -0.122 7.122 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.134 0.866 26 H 0.424 0.576 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.065 0.935 31 H -0.004 1.004 32 H -0.004 1.004 33 H 0.263 0.737 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.931 -9.936 -0.048 21.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.205 6.205 3 C 0.183 3.817 4 N -0.358 5.358 5 C 0.231 3.769 6 N -0.315 5.315 7 C 0.027 3.973 8 C -0.143 4.143 9 C -0.010 4.010 10 C -0.580 4.580 11 H 0.081 0.919 12 C -0.198 4.198 13 N -0.573 5.573 14 Si 0.788 3.212 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.186 1.186 18 N -0.305 5.305 19 C 0.077 3.923 20 C -0.158 4.158 21 C -0.135 4.135 22 F -0.101 7.101 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.152 0.848 26 H 0.264 0.736 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.014 0.986 32 H 0.014 0.986 33 H 0.072 0.928 34 H 0.127 0.873 35 H 0.117 0.883 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 18.062 -9.531 -0.041 20.422 hybrid contribution -0.645 0.058 -0.002 0.647 sum 17.417 -9.473 -0.043 19.827 Atomic orbital electron populations 1.23215 0.74689 1.05417 1.02720 1.86296 1.25216 1.22774 1.86245 1.20117 0.88435 0.85466 0.87674 1.67568 1.40550 0.97642 1.30082 1.19133 0.85371 0.85543 0.86900 1.44383 1.05707 1.04581 1.76817 1.21263 0.76587 0.98164 1.01277 1.21627 0.96362 0.94375 1.01966 1.18897 0.90895 0.95863 0.95332 1.21681 0.92114 0.93755 1.50496 0.91853 1.25959 0.98050 1.01011 0.94796 1.70089 1.04357 1.31177 1.51659 0.85467 0.77713 0.79560 0.78426 1.19877 1.20977 1.18642 1.67961 1.03319 1.32682 1.26495 1.22010 0.99357 0.84448 0.86497 1.20923 0.83561 1.05710 1.05629 1.17911 0.86304 0.85466 1.23837 1.91459 1.74210 1.49080 1.95393 0.92265 0.92254 0.84835 0.73616 0.92459 0.92477 0.91689 0.91664 0.98585 0.98589 0.92796 0.87319 0.88266 0.88120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.41 113.37 1.18 1.90 16 2 O -0.30 -8.05 10.40 -88.76 -0.92 -8.97 16 3 C 0.37 10.84 7.53 84.87 0.64 11.48 16 4 N -0.62 -19.23 8.53 -310.65 -2.65 -21.88 16 5 C 0.59 17.74 8.43 261.47 2.20 19.95 16 6 N -0.68 -19.66 5.71 -351.02 -2.00 -21.67 16 7 C 0.15 5.01 5.65 86.38 0.49 5.50 16 8 C -0.11 -3.96 5.27 30.59 0.16 -3.80 16 9 C 0.03 1.40 4.97 29.85 0.15 1.55 16 10 C -0.54 -29.84 9.11 25.60 0.23 -29.61 16 11 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 12 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 13 N -0.93 -55.76 13.29 21.45 0.28 -55.47 16 14 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 18 N -0.58 -15.61 10.39 -186.07 -1.93 -17.55 16 19 C 0.22 5.23 6.82 42.49 0.29 5.52 16 20 C -0.10 -1.39 10.05 71.23 0.72 -0.68 16 21 C -0.11 -2.79 7.32 22.62 0.17 -2.62 16 22 F -0.12 -3.02 16.49 44.97 0.74 -2.28 16 23 H 0.06 1.34 8.12 -2.39 -0.02 1.32 16 24 H 0.06 1.34 8.12 -2.39 -0.02 1.32 16 25 H 0.13 1.91 8.14 -2.38 -0.02 1.89 16 26 H 0.42 10.72 8.59 -92.71 -0.80 9.92 16 27 H 0.06 1.99 8.14 -2.38 -0.02 1.98 16 28 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 30 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 33 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 34 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.10 1.11 7.70 -2.39 -0.02 1.09 16 36 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -65.65 318.53 2.53 -63.12 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.30 Total: 9.70 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 6.69 Total: 9.64 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -6.30 Total: -116.56 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.92 Total: -8.97 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.74 Total: -2.28 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -65.65 2.53 -63.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428208.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.874 kcal (2) G-P(sol) polarization free energy of solvation -65.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds