Wall clock time and date at job start Mon Mar 30 2020 01:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39295 * 119.80087 * 260.27602 * 3 2 1 5 5 C 1.38803 * 119.93771 * 179.76527 * 4 3 2 6 6 N 1.37827 * 133.21794 * 180.17466 * 5 4 3 7 7 H 0.96998 * 125.07412 * 0.30752 * 6 5 4 8 8 C 1.36746 * 109.83932 * 180.30965 * 6 5 4 9 9 C 1.34387 * 109.92853 * 359.97438 * 8 6 5 10 10 C 1.40725 * 119.64756 * 0.51483 * 5 4 3 11 11 C 1.40407 * 120.15474 * 359.73945 * 10 5 4 12 12 N 1.39615 * 120.14293 * 180.02562 * 11 10 5 13 13 C 1.46491 * 120.00192 * 179.97438 * 12 11 10 14 14 C 1.53011 * 109.47086 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47016 * 180.02562 * 14 13 12 16 16 C 1.50693 * 109.46814 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00300 * 0.02562 * 16 15 14 18 18 C 1.37884 * 120.00009 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99786 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99916 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46856 * 90.00363 * 20 18 16 22 22 H 1.48504 * 109.47195 * 209.99913 * 20 18 16 23 23 H 1.48497 * 109.47454 * 330.00084 * 20 18 16 24 24 C 1.37936 * 119.71918 * 0.02562 * 11 10 5 25 25 H 1.07996 * 120.02716 * 0.02562 * 4 3 2 26 26 H 1.08000 * 125.03285 * 180.02562 * 8 6 5 27 27 H 1.07997 * 126.49045 * 179.97438 * 9 8 6 28 28 H 0.97006 * 119.99517 * 359.97438 * 12 11 10 29 29 H 1.08999 * 109.47732 * 299.99931 * 13 12 11 30 30 H 1.09000 * 109.46974 * 60.00621 * 13 12 11 31 31 H 1.08999 * 109.46830 * 300.00546 * 14 13 12 32 32 H 1.09000 * 109.46655 * 60.00489 * 14 13 12 33 33 H 1.08998 * 109.47185 * 300.00146 * 15 14 13 34 34 H 1.09006 * 109.46809 * 59.99983 * 15 14 13 35 35 H 0.97001 * 120.00139 * 179.97438 * 19 18 16 36 36 H 1.07996 * 119.92698 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2602 0.2051 1.1914 5 6 4.6482 0.2014 1.1955 6 7 5.5895 0.3676 2.1884 7 1 5.3903 0.5234 3.1249 8 6 6.8460 0.2800 1.6561 9 6 6.7685 0.0590 0.3328 10 6 5.3473 0.0014 -0.0093 11 6 4.6441 -0.1988 -1.2080 12 7 5.3380 -0.3978 -2.4030 13 6 4.6012 -0.6070 -3.6518 14 6 5.5916 -0.7976 -4.8025 15 6 4.8220 -1.0155 -6.1068 16 6 5.7974 -1.2039 -7.2400 17 1 6.8599 -1.1719 -7.0489 18 6 5.3334 -1.4181 -8.5206 19 7 4.0395 -1.4576 -8.7532 20 14 6.5424 -1.6509 -9.9253 21 1 6.8645 -3.0936 -10.0672 22 1 5.9377 -1.1525 -11.1867 23 1 7.7862 -0.8919 -9.6389 24 6 3.2648 -0.1981 -1.1999 25 1 2.7173 0.3621 2.1117 26 1 7.7646 0.3737 2.2163 27 1 7.5982 -0.0536 -0.3493 28 1 6.3081 -0.3975 -2.4064 29 1 3.9751 -1.4945 -3.5600 30 1 3.9737 0.2612 -3.8532 31 1 6.2173 0.0901 -4.8941 32 1 6.2194 -1.6657 -4.6014 33 1 4.1959 -1.9030 -6.0154 34 1 4.1943 -0.1472 -6.3077 35 1 3.7130 -1.6079 -9.6541 36 1 2.7205 -0.3523 -2.1199 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433953.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:50 Heat of formation + Delta-G solvation = 72.213867 kcal Electronic energy + Delta-G solvation = -18537.151965 eV Core-core repulsion = 15600.036811 eV Total energy + Delta-G solvation = -2937.115154 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.34181 -38.10723 -36.80642 -35.24711 -33.63824 -31.98839 -30.57703 -29.60659 -28.36665 -26.25794 -23.63948 -23.39869 -21.60122 -20.66746 -20.41729 -18.87094 -17.65999 -16.43272 -16.04535 -15.35314 -15.26849 -15.01611 -14.50604 -14.46222 -14.19902 -13.81580 -13.64964 -13.37069 -12.78043 -12.53465 -12.50251 -12.35390 -11.88988 -11.65862 -11.42831 -11.38370 -10.91070 -10.69250 -10.57976 -10.25041 -9.80484 -9.49113 -9.14687 -8.78886 -8.39475 -8.38596 -7.00047 -6.03469 -4.06404 0.74609 1.54605 2.44955 2.63275 2.94291 3.13720 3.30190 3.36742 3.39366 3.62685 3.95924 3.98986 4.43529 4.64263 4.92339 5.04534 5.18545 5.29930 5.32612 5.42164 5.60501 5.71324 5.73195 5.83488 6.07582 6.09454 6.34677 6.41209 6.55664 6.56568 6.62960 6.88846 6.96036 7.33111 7.44996 7.49831 7.61031 7.73527 7.87892 7.95135 8.36700 9.00194 9.58022 11.07811 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.021814 B = 0.003459 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.254248 B = 8092.001801 C = 9349.506341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.265 3.735 3 C 0.047 3.953 4 C -0.150 4.150 5 C 0.134 3.866 6 N -0.593 5.593 7 H 0.416 0.584 8 C 0.038 3.962 9 C -0.187 4.187 10 C -0.151 4.151 11 C 0.278 3.722 12 N -0.730 5.730 13 C 0.116 3.884 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.204 4.204 25 H 0.123 0.877 26 H 0.169 0.831 27 H 0.145 0.855 28 H 0.401 0.599 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.261 0.739 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.261 3.830 22.928 23.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.051 4.051 3 C 0.042 3.958 4 C -0.176 4.176 5 C 0.025 3.975 6 N -0.196 5.196 7 H 0.252 0.748 8 C -0.088 4.088 9 C -0.212 4.212 10 C -0.160 4.160 11 C 0.169 3.831 12 N -0.355 5.355 13 C -0.007 4.007 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.232 4.232 25 H 0.141 0.859 26 H 0.186 0.814 27 H 0.162 0.838 28 H 0.236 0.764 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.283 3.794 22.679 23.227 hybrid contribution 1.362 -0.088 -0.452 1.438 sum 4.645 3.706 22.227 23.007 Atomic orbital electron populations 1.81224 1.12148 1.08999 1.07839 1.25706 0.92643 0.93466 0.93249 1.15192 0.83495 1.03451 0.93704 1.19464 0.89979 1.10932 0.97249 1.17583 0.89991 1.02129 0.87776 1.41738 1.04692 1.63748 1.09448 0.74774 1.21733 0.87478 1.05087 0.94524 1.21587 0.94314 1.10469 0.94878 1.18807 0.93583 1.11909 0.91705 1.17002 0.90363 0.90950 0.84775 1.45026 1.08631 1.76932 1.04861 1.21721 0.95847 1.00591 0.82574 1.21854 0.97900 1.00820 0.95245 1.19030 0.95448 0.97347 0.89543 1.21203 0.93017 1.49302 0.92575 0.92656 1.25026 0.95119 0.95353 0.98938 1.69959 1.12401 1.49730 1.21214 0.86586 0.81242 0.78363 0.81761 1.20652 1.21209 1.19872 1.20215 0.91842 1.13598 0.97497 0.85937 0.81377 0.83754 0.76417 0.92115 0.92121 0.92700 0.92704 0.96313 0.96300 0.92918 0.84862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.47 18.54 41.83 0.78 -5.69 16 2 C 0.26 3.50 15.30 -22.47 -0.34 3.15 16 3 C 0.05 0.56 5.74 -106.85 -0.61 -0.05 16 4 C -0.15 -1.53 9.75 -38.98 -0.38 -1.91 16 5 C 0.13 1.37 7.25 -84.02 -0.61 0.76 16 6 N -0.59 -4.26 6.07 -10.67 -0.06 -4.33 16 7 H 0.42 1.66 8.96 -40.82 -0.37 1.30 16 8 C 0.04 0.27 11.82 -16.72 -0.20 0.07 16 9 C -0.19 -1.75 10.84 -37.71 -0.41 -2.16 16 10 C -0.15 -1.75 6.27 -104.91 -0.66 -2.41 16 11 C 0.28 3.58 6.67 -83.61 -0.56 3.03 16 12 N -0.73 -9.69 5.73 -58.50 -0.34 -10.02 16 13 C 0.12 1.81 4.91 -4.04 -0.02 1.79 16 14 C -0.12 -2.25 5.27 -26.72 -0.14 -2.39 16 15 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 16 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 17 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 20 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 24 C -0.20 -2.65 9.00 -38.97 -0.35 -3.00 16 25 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 26 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 27 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.40 4.79 8.28 -40.82 -0.34 4.45 16 29 H 0.06 0.96 7.95 -51.93 -0.41 0.55 16 30 H 0.06 0.96 7.94 -51.93 -0.41 0.55 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.13 1.78 6.70 -52.49 -0.35 1.42 16 LS Contribution 319.48 15.07 4.81 4.81 Total: -1.00 -31.78 319.48 -8.31 -40.09 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.38 Total: 0.50 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -4.83 Total: -15.86 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 1.11 Total: -45.82 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.78 -8.31 -40.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433953.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.301 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds