Wall clock time and date at job start Mon Mar 30 2020 01:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39295 * 119.80087 * 260.27602 * 3 2 1 5 5 C 1.38803 * 119.93771 * 179.76527 * 4 3 2 6 6 N 1.37827 * 133.21794 * 180.17466 * 5 4 3 7 7 H 0.96998 * 125.07412 * 0.30752 * 6 5 4 8 8 C 1.36746 * 109.83932 * 180.30965 * 6 5 4 9 9 C 1.34387 * 109.92853 * 359.97438 * 8 6 5 10 10 C 1.40725 * 119.64756 * 0.51483 * 5 4 3 11 11 C 1.40407 * 120.15474 * 359.73945 * 10 5 4 12 12 N 1.39615 * 120.14293 * 180.02562 * 11 10 5 13 13 C 1.46491 * 120.00192 * 179.97438 * 12 11 10 14 14 C 1.53011 * 109.47086 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47016 * 180.02562 * 14 13 12 16 16 C 1.50693 * 109.46814 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00300 * 0.02562 * 16 15 14 18 18 C 1.37884 * 120.00009 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99786 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99916 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46856 * 90.00363 * 20 18 16 22 22 H 1.48504 * 109.47195 * 209.99913 * 20 18 16 23 23 H 1.48497 * 109.47454 * 330.00084 * 20 18 16 24 24 C 1.37936 * 119.71918 * 0.02562 * 11 10 5 25 25 H 1.07996 * 120.02716 * 0.02562 * 4 3 2 26 26 H 1.08000 * 125.03285 * 180.02562 * 8 6 5 27 27 H 1.07997 * 126.49045 * 179.97438 * 9 8 6 28 28 H 0.97006 * 119.99517 * 359.97438 * 12 11 10 29 29 H 1.08999 * 109.47732 * 299.99931 * 13 12 11 30 30 H 1.09000 * 109.46974 * 60.00621 * 13 12 11 31 31 H 1.08999 * 109.46830 * 300.00546 * 14 13 12 32 32 H 1.09000 * 109.46655 * 60.00489 * 14 13 12 33 33 H 1.08998 * 109.47185 * 300.00146 * 15 14 13 34 34 H 1.09006 * 109.46809 * 59.99983 * 15 14 13 35 35 H 0.97001 * 120.00139 * 179.97438 * 19 18 16 36 36 H 1.07996 * 119.92698 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2602 0.2051 1.1914 5 6 4.6482 0.2014 1.1955 6 7 5.5895 0.3676 2.1884 7 1 5.3903 0.5234 3.1249 8 6 6.8460 0.2800 1.6561 9 6 6.7685 0.0590 0.3328 10 6 5.3473 0.0014 -0.0093 11 6 4.6441 -0.1988 -1.2080 12 7 5.3380 -0.3978 -2.4030 13 6 4.6012 -0.6070 -3.6518 14 6 5.5916 -0.7976 -4.8025 15 6 4.8220 -1.0155 -6.1068 16 6 5.7974 -1.2039 -7.2400 17 1 6.8599 -1.1719 -7.0489 18 6 5.3334 -1.4181 -8.5206 19 7 4.0395 -1.4576 -8.7532 20 14 6.5424 -1.6509 -9.9253 21 1 6.8645 -3.0936 -10.0672 22 1 5.9377 -1.1525 -11.1867 23 1 7.7862 -0.8919 -9.6389 24 6 3.2648 -0.1981 -1.1999 25 1 2.7173 0.3621 2.1117 26 1 7.7646 0.3737 2.2163 27 1 7.5982 -0.0536 -0.3493 28 1 6.3081 -0.3975 -2.4064 29 1 3.9751 -1.4945 -3.5600 30 1 3.9737 0.2612 -3.8532 31 1 6.2173 0.0901 -4.8941 32 1 6.2194 -1.6657 -4.6014 33 1 4.1959 -1.9030 -6.0154 34 1 4.1943 -0.1472 -6.3077 35 1 3.7130 -1.6079 -9.6541 36 1 2.7205 -0.3523 -2.1199 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168433953.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:50 Heat of formation + Delta-G solvation = 53.158636 kcal Electronic energy + Delta-G solvation = -18537.978262 eV Core-core repulsion = 15600.036811 eV Total energy + Delta-G solvation = -2937.941450 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.09285 -39.03739 -37.93610 -36.47256 -35.30523 -33.52128 -31.66373 -30.42299 -29.49798 -27.81907 -25.10038 -24.35938 -22.82140 -21.91037 -21.32153 -19.86370 -18.52229 -18.36279 -16.90373 -16.63550 -16.38532 -16.29774 -16.15856 -15.47964 -14.97965 -14.89989 -14.64460 -14.32094 -14.02420 -13.96697 -13.72211 -13.62603 -13.48298 -12.86852 -12.78402 -12.47158 -12.44280 -12.24949 -12.22770 -11.64002 -11.42563 -11.16124 -11.06420 -10.53881 -9.60298 -9.20881 -8.18676 -7.90096 -6.29581 -0.13030 0.65391 1.42241 1.43287 1.54297 1.61317 1.74567 2.20098 2.23070 2.41932 2.61847 3.02466 3.06473 3.15252 3.96526 4.15572 4.18849 4.29009 4.29023 4.42389 4.54767 4.62428 4.70853 4.91824 5.01291 5.04207 5.08069 5.20323 5.29014 5.44620 5.52564 5.60538 5.74783 5.81917 5.86362 6.09439 6.23940 6.40004 6.47217 6.82572 6.87465 6.93207 7.39888 8.93211 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.021814 B = 0.003459 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.254248 B = 8092.001801 C = 9349.506341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.285 3.715 3 C 0.026 3.974 4 C -0.123 4.123 5 C 0.118 3.882 6 N -0.578 5.578 7 H 0.434 0.566 8 C 0.068 3.932 9 C -0.221 4.221 10 C -0.159 4.159 11 C 0.258 3.742 12 N -0.730 5.730 13 C 0.133 3.867 14 C -0.103 4.103 15 C 0.025 3.975 16 C -0.542 4.542 17 H 0.063 0.937 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.261 1.261 24 C -0.218 4.218 25 H 0.149 0.851 26 H 0.213 0.787 27 H 0.154 0.846 28 H 0.408 0.592 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.061 0.939 33 H -0.006 1.006 34 H -0.006 1.006 35 H 0.263 0.737 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.953 4.219 25.258 26.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.029 4.029 3 C 0.021 3.979 4 C -0.148 4.148 5 C 0.009 3.991 6 N -0.181 5.181 7 H 0.274 0.726 8 C -0.059 4.059 9 C -0.245 4.245 10 C -0.168 4.168 11 C 0.152 3.848 12 N -0.357 5.357 13 C 0.009 3.991 14 C -0.141 4.141 15 C -0.013 4.013 16 C -0.580 4.580 17 H 0.082 0.918 18 C -0.200 4.200 19 N -0.575 5.575 20 Si 0.789 3.211 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.185 1.185 24 C -0.245 4.245 25 H 0.167 0.833 26 H 0.229 0.771 27 H 0.172 0.828 28 H 0.244 0.756 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.012 0.988 34 H 0.012 0.988 35 H 0.072 0.928 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.980 4.193 25.077 26.119 hybrid contribution 0.607 -0.180 -1.002 1.185 sum 6.587 4.013 24.075 25.280 Atomic orbital electron populations 1.81232 1.13230 1.10849 1.09135 1.25874 0.92743 0.92205 0.92069 1.15158 0.82688 1.05819 0.94239 1.19714 0.90300 1.07504 0.97314 1.17644 0.90267 1.02876 0.88355 1.41821 1.04199 1.62154 1.09956 0.72581 1.22415 0.88466 1.01094 0.93955 1.21857 0.93466 1.12790 0.96424 1.19117 0.95194 1.10990 0.91493 1.17065 0.90314 0.92362 0.85087 1.44681 1.08692 1.78200 1.04122 1.21283 0.94901 0.99981 0.82946 1.21558 0.97769 1.01333 0.93415 1.18937 0.95074 0.95056 0.92247 1.21697 0.93860 1.48778 0.93620 0.91839 1.25993 0.96954 0.95026 1.02020 1.70102 1.14541 1.50908 1.21910 0.85449 0.79026 0.78636 0.77952 1.19840 1.21034 1.18503 1.20172 0.92250 1.14628 0.97489 0.83331 0.77084 0.82844 0.75618 0.92911 0.92922 0.92026 0.92009 0.98793 0.98776 0.92843 0.86406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -14.55 18.54 19.00 0.35 -14.19 16 2 C 0.29 7.65 15.30 88.33 1.35 9.00 16 3 C 0.03 0.62 5.74 -21.31 -0.12 0.50 16 4 C -0.12 -2.24 9.75 22.66 0.22 -2.02 16 5 C 0.12 2.09 7.25 38.94 0.28 2.38 16 6 N -0.58 -5.83 6.07 -187.67 -1.14 -6.97 16 7 H 0.43 1.37 8.96 -92.71 -0.83 0.54 16 8 C 0.07 0.64 11.82 83.05 0.98 1.62 16 9 C -0.22 -3.49 10.84 23.48 0.25 -3.24 16 10 C -0.16 -3.42 6.27 -20.05 -0.13 -3.54 16 11 C 0.26 6.65 6.67 38.36 0.26 6.91 16 12 N -0.73 -19.47 5.73 -338.99 -1.94 -21.41 16 13 C 0.13 4.33 4.91 86.38 0.42 4.75 16 14 C -0.10 -3.92 5.27 30.60 0.16 -3.75 16 15 C 0.02 1.26 4.97 29.85 0.15 1.41 16 16 C -0.54 -30.21 9.11 25.60 0.23 -29.98 16 17 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 18 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 19 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 20 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 24 C -0.22 -5.84 9.00 22.67 0.20 -5.63 16 25 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 26 H 0.21 0.16 8.06 -2.91 -0.02 0.13 16 27 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 28 H 0.41 9.52 8.28 -92.70 -0.77 8.75 16 29 H 0.05 1.78 7.95 -2.39 -0.02 1.76 16 30 H 0.05 1.77 7.94 -2.39 -0.02 1.75 16 31 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 33 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 34 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 35 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 36 H 0.12 3.41 6.70 -2.91 -0.02 3.39 16 Total: -1.00 -70.66 319.48 3.84 -66.82 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -0.48 Total: 7.77 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 4.73 Total: -21.26 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -2.45 Total: -99.17 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -70.66 3.84 -66.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433953.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.981 kcal (2) G-P(sol) polarization free energy of solvation -70.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds