Wall clock time and date at job start Mon Mar 30 2020 01:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39537 * 120.13537 * 61.95877 * 3 2 1 5 5 C 1.38026 * 120.56719 * 179.97438 * 4 3 2 6 6 C 1.38794 * 120.49619 * 0.02562 * 5 4 3 7 7 N 1.38978 * 120.07419 * 180.02562 * 6 5 4 8 8 C 1.46501 * 119.99678 * 359.97171 * 7 6 5 9 9 C 1.53007 * 109.47107 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47071 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46854 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00087 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99623 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00304 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47125 * 89.99538 * 15 13 11 17 17 H 1.48497 * 109.47569 * 209.99737 * 15 13 11 18 18 H 1.48502 * 109.47129 * 329.99892 * 15 13 11 19 19 C 1.40314 * 119.85460 * 359.97438 * 6 5 4 20 20 C 1.46504 * 133.90557 * 180.23460 * 19 6 5 21 21 C 1.34221 * 106.89286 * 180.13189 * 20 19 6 22 22 N 1.36966 * 109.78950 * 359.65035 * 21 20 19 23 23 H 0.96998 * 125.02860 * 180.19616 * 22 21 20 24 24 C 1.37161 * 109.93529 * 0.22666 * 22 21 20 25 25 H 1.08002 * 119.71590 * 0.02562 * 4 3 2 26 26 H 1.07996 * 119.75109 * 180.02562 * 5 4 3 27 27 H 0.96999 * 120.00398 * 179.97438 * 7 6 5 28 28 H 1.08993 * 109.47543 * 299.99919 * 8 7 6 29 29 H 1.09008 * 109.47060 * 60.00478 * 8 7 6 30 30 H 1.08995 * 109.47386 * 300.00282 * 9 8 7 31 31 H 1.09000 * 109.46886 * 60.00038 * 9 8 7 32 32 H 1.08995 * 109.47263 * 300.00378 * 10 9 8 33 33 H 1.08994 * 109.46825 * 60.00492 * 10 9 8 34 34 H 0.97001 * 119.99889 * 180.02562 * 14 13 11 35 35 H 1.08000 * 126.55810 * 0.04713 * 20 19 6 36 36 H 1.08002 * 125.10919 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 -0.5664 -1.0651 5 6 4.6491 -0.5702 -1.0745 6 6 5.3621 -0.0101 -0.0237 7 7 6.7518 -0.0183 -0.0425 8 6 7.4655 -0.6191 -1.1721 9 6 8.9738 -0.4959 -0.9461 10 6 9.7191 -1.1239 -2.1255 11 6 11.2046 -1.0032 -1.9025 12 1 11.5796 -0.5259 -1.0092 13 6 12.0851 -1.5011 -2.8394 14 7 11.6285 -2.0819 -3.9275 15 14 13.9264 -1.3509 -2.5635 16 1 14.4165 -2.5465 -1.8317 17 1 14.6173 -1.2553 -3.8745 18 1 14.2094 -0.1313 -1.7648 19 6 4.6770 0.5653 1.0571 20 6 5.1020 1.2284 2.2925 21 6 3.9861 1.5738 2.9535 22 7 2.8844 1.1912 2.2353 23 1 1.9647 1.3352 2.5077 24 6 3.2744 0.5738 1.0742 25 1 2.7266 -1.0053 -1.8896 26 1 5.1781 -1.0122 -1.9058 27 1 7.2491 0.3737 0.6923 28 1 7.1949 -1.6716 -1.2545 29 1 7.1928 -0.1006 -2.0914 30 1 9.2441 0.5568 -0.8639 31 1 9.2468 -1.0140 -0.0267 32 1 9.4487 -2.1766 -2.2072 33 1 9.4461 -0.6062 -3.0449 34 1 12.2478 -2.4325 -4.5865 35 1 6.1188 1.4043 2.6111 36 1 3.9607 2.0822 3.9061 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168434402.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:17 Heat of formation + Delta-G solvation = 69.126552 kcal Electronic energy + Delta-G solvation = -18521.699728 eV Core-core repulsion = 15584.450698 eV Total energy + Delta-G solvation = -2937.249030 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.42488 -38.02460 -36.86142 -35.36693 -33.68266 -32.03511 -30.63308 -29.49047 -28.49014 -26.45221 -23.66493 -22.90998 -21.61391 -21.03361 -20.34031 -19.13895 -17.70365 -16.55433 -16.08158 -15.57835 -15.14040 -15.11327 -14.63252 -14.50306 -14.00670 -13.57781 -13.43152 -13.38558 -12.87773 -12.64254 -12.54074 -12.36620 -11.94799 -11.75857 -11.47819 -11.44569 -10.94261 -10.74936 -10.61320 -10.22916 -9.84804 -9.54265 -9.19131 -8.85577 -8.44092 -8.42294 -7.06643 -6.07310 -4.10260 0.86241 1.58467 2.39862 2.68987 2.91865 3.14810 3.27694 3.34482 3.36791 3.49235 3.97197 4.07088 4.40427 4.60651 4.81292 5.01906 5.13027 5.29021 5.34190 5.50731 5.52663 5.62831 5.75499 5.81236 6.00999 6.15263 6.30883 6.43467 6.49104 6.53822 6.57761 6.87018 6.89960 7.29182 7.33641 7.56280 7.56873 7.68271 7.73080 7.91042 8.32445 8.96233 9.54465 11.03967 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035159 B = 0.003050 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.190360 B = 9177.722222 C = 9948.163885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.269 3.731 3 C -0.140 4.140 4 C 0.025 3.975 5 C -0.251 4.251 6 C 0.314 3.686 7 N -0.718 5.718 8 C 0.112 3.888 9 C -0.121 4.121 10 C 0.025 3.975 11 C -0.523 4.523 12 H 0.055 0.945 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.188 4.188 20 C -0.173 4.173 21 C 0.023 3.977 22 N -0.591 5.591 23 H 0.414 0.586 24 C 0.186 3.814 25 H 0.132 0.868 26 H 0.136 0.864 27 H 0.403 0.597 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.261 0.739 35 H 0.146 0.854 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.413 6.009 11.305 19.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.044 4.044 3 C -0.150 4.150 4 C 0.003 3.997 5 C -0.275 4.275 6 C 0.201 3.799 7 N -0.339 5.339 8 C -0.011 4.011 9 C -0.159 4.159 10 C -0.013 4.013 11 C -0.562 4.562 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.196 4.196 20 C -0.197 4.197 21 C -0.101 4.101 22 N -0.193 5.193 23 H 0.251 0.749 24 C 0.073 3.927 25 H 0.150 0.850 26 H 0.154 0.846 27 H 0.237 0.763 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.164 0.836 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -16.024 5.879 11.048 20.332 hybrid contribution 1.303 0.256 0.501 1.419 sum -14.722 6.136 11.549 19.692 Atomic orbital electron populations 1.81224 1.12182 1.11599 1.08588 1.25784 0.92631 0.92596 0.93348 1.14617 0.83322 1.17983 0.99086 1.20585 0.93323 0.91634 0.94195 1.20313 0.93330 1.12613 1.01291 1.17548 0.83757 0.87953 0.90663 1.45144 1.02558 1.61616 1.24588 1.21822 0.93653 0.97671 0.87943 1.21875 0.90797 1.01312 1.01963 1.19023 0.94422 0.95972 0.91874 1.21194 0.91322 1.38102 1.05551 0.92663 1.25017 0.99014 0.95211 0.95154 1.69953 1.34737 1.38925 1.09681 0.86587 0.85364 0.78480 0.77529 1.20633 1.21184 1.19885 1.18481 0.91538 1.11585 0.98022 1.21560 0.98207 1.05391 0.94583 1.21696 0.85207 1.04596 0.98610 1.41740 1.08861 1.51302 1.17427 0.74927 1.17570 0.92614 0.95517 0.87029 0.85003 0.84625 0.76265 0.91678 0.91684 0.92648 0.92656 0.96271 0.96263 0.92889 0.83637 0.81338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -6.46 18.54 41.84 0.78 -5.68 16 2 C 0.27 3.32 15.34 -22.47 -0.34 2.98 16 3 C -0.14 -1.59 5.76 -106.53 -0.61 -2.21 16 4 C 0.03 0.27 9.71 -39.17 -0.38 -0.11 16 5 C -0.25 -2.90 9.27 -39.45 -0.37 -3.26 16 6 C 0.31 3.83 6.68 -83.64 -0.56 3.27 16 7 N -0.72 -8.89 5.71 -58.46 -0.33 -9.22 16 8 C 0.11 1.62 4.90 -4.04 -0.02 1.60 16 9 C -0.12 -2.16 5.27 -26.73 -0.14 -2.30 16 10 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 11 C -0.52 -14.06 9.11 -34.44 -0.31 -14.37 16 12 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 15 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 C -0.19 -2.18 6.26 -105.02 -0.66 -2.84 16 20 C -0.17 -1.64 10.84 -37.67 -0.41 -2.05 16 21 C 0.02 0.18 11.83 -16.67 -0.20 -0.01 16 22 N -0.59 -5.22 6.05 -10.44 -0.06 -5.29 16 23 H 0.41 2.85 8.96 -40.82 -0.37 2.49 16 24 C 0.19 2.09 6.97 -83.76 -0.58 1.51 16 25 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 26 H 0.14 1.50 6.68 -52.49 -0.35 1.15 16 27 H 0.40 4.50 8.27 -40.82 -0.34 4.16 16 28 H 0.06 0.94 7.93 -51.93 -0.41 0.53 16 29 H 0.06 0.94 7.93 -51.92 -0.41 0.53 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 319.39 15.07 4.81 4.81 Total: -1.00 -30.84 319.39 -8.29 -39.13 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.38 Total: 1.41 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -4.82 Total: -15.87 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 1.12 Total: -45.38 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.84 -8.29 -39.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434402.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.258 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds