Wall clock time and date at job start Mon Mar 30 2020 00:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 C 1.50697 * 109.47466 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99890 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00428 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99563 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00432 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46838 * 89.99826 * 10 8 6 12 12 H 1.48497 * 109.47419 * 209.99978 * 10 8 6 13 13 H 1.48499 * 109.47011 * 330.00539 * 10 8 6 14 14 N 1.46901 * 109.46937 * 120.00309 * 2 1 3 15 15 C 1.46900 * 110.99981 * 274.99476 * 14 2 1 16 16 H 1.09001 * 109.46667 * 35.00893 * 15 14 2 17 17 C 1.52995 * 109.47136 * 275.00290 * 15 14 2 18 18 O 1.42899 * 109.47467 * 295.00017 * 17 15 14 19 19 C 1.50709 * 109.46801 * 155.00321 * 15 14 2 20 20 C 1.33389 * 125.19895 * 220.00448 * 19 15 14 21 21 C 1.38427 * 114.92020 * 179.97438 * 20 19 15 22 22 C 1.33392 * 114.91604 * 359.97438 * 21 20 19 23 23 S 1.75882 * 125.20328 * 39.69832 * 19 15 14 24 24 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 25 25 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 26 26 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 28 28 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 29 29 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 30 30 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 31 31 H 0.97002 * 119.99731 * 180.02562 * 9 8 6 32 32 H 1.00900 * 111.00332 * 38.95526 * 14 2 1 33 33 H 1.08995 * 109.47478 * 55.00626 * 17 15 14 34 34 H 1.09005 * 109.46704 * 174.99809 * 17 15 14 35 35 H 0.96695 * 114.00253 * 180.02562 * 18 17 15 36 36 H 1.08004 * 122.54113 * 359.97438 * 20 19 15 37 37 H 1.07994 * 122.54054 * 179.97438 * 21 20 19 38 38 H 1.08000 * 125.20036 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 6 4.0670 -1.3232 -2.5445 7 1 3.3685 -1.8030 -3.2141 8 6 5.4182 -1.3593 -2.8165 9 7 6.2688 -0.7746 -2.0014 10 14 6.0409 -2.2398 -4.3417 11 1 6.0901 -1.2856 -5.4787 12 1 7.4025 -2.7734 -4.0841 13 1 5.1249 -3.3601 -4.6751 14 7 2.0196 -0.6926 1.1994 15 6 2.0825 0.2225 2.3469 16 1 1.2576 0.9328 2.2907 17 6 3.4112 0.9807 2.3223 18 8 4.4881 0.0610 2.5128 19 6 1.9787 -0.5679 3.6259 20 6 1.2866 -0.1977 4.7044 21 6 1.3372 -1.0875 5.7636 22 6 2.0698 -2.1805 5.5449 23 16 2.7452 -2.1229 3.9219 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.7515 -1.7715 -1.2057 28 1 1.6053 -0.2617 -2.1370 29 1 3.8531 0.4369 -1.3574 30 1 3.9994 -1.0728 -0.4261 31 1 7.2194 -0.7996 -2.1929 32 1 1.4496 -1.4980 1.4100 33 1 3.5264 1.4810 1.3608 34 1 3.4210 1.7223 3.1211 35 1 5.3628 0.4732 2.5089 36 1 0.7291 0.7263 4.7481 37 1 0.8224 -0.9103 6.6963 38 1 2.2225 -2.9801 6.2547 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490100.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:16 Heat of formation + Delta-G solvation = -25.403764 kcal Electronic energy + Delta-G solvation = -18705.957455 eV Core-core repulsion = 15867.760483 eV Total energy + Delta-G solvation = -2838.196972 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.59241 -37.01371 -35.78837 -33.35360 -32.09234 -29.59496 -28.43029 -26.93100 -25.02524 -23.94253 -21.71468 -20.78782 -19.95190 -18.92278 -17.17102 -16.90146 -16.05175 -15.32826 -15.24892 -14.49572 -14.30315 -13.98595 -13.56986 -13.05188 -12.81002 -12.66019 -12.47426 -12.44846 -12.28613 -11.86671 -11.61774 -11.27920 -11.18634 -10.89806 -10.78323 -10.41074 -10.35453 -10.18058 -9.63274 -9.45220 -9.16246 -8.84825 -8.51818 -8.19084 -8.17487 -7.88091 -5.83409 -3.83774 1.16266 1.88855 2.33945 2.83821 3.39821 3.46021 3.49718 4.38524 4.58176 4.61140 4.91280 5.14908 5.34642 5.37243 5.52069 5.52236 5.59699 5.61388 5.64989 5.71837 5.79098 6.01089 6.07232 6.18880 6.27841 6.39409 6.43294 6.56289 6.71034 6.92204 7.34889 7.49115 7.77923 7.89951 8.13864 8.16274 8.33909 8.63559 9.25435 9.78195 11.27462 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.023550 B = 0.004915 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.650607 B = 5695.359424 C = 6164.584972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.083 3.917 3 H 0.071 0.929 4 C -0.097 4.097 5 C 0.031 3.969 6 C -0.517 4.517 7 H 0.049 0.951 8 C 0.057 3.943 9 N -0.893 5.893 10 Si 0.885 3.115 11 H -0.283 1.283 12 H -0.288 1.288 13 H -0.276 1.276 14 N -0.655 5.655 15 C 0.157 3.843 16 H 0.065 0.935 17 C 0.094 3.906 18 O -0.546 6.546 19 C -0.167 4.167 20 C -0.156 4.156 21 C -0.140 4.140 22 C -0.249 4.249 23 S 0.190 5.810 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.003 0.997 30 H 0.039 0.961 31 H 0.256 0.744 32 H 0.338 0.662 33 H 0.054 0.946 34 H 0.035 0.965 35 H 0.374 0.626 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.058 2.588 14.522 17.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.027 4.027 3 H 0.090 0.910 4 C -0.135 4.135 5 C -0.006 4.006 6 C -0.556 4.556 7 H 0.067 0.933 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.713 3.287 11 H -0.210 1.210 12 H -0.214 1.214 13 H -0.201 1.201 14 N -0.287 5.287 15 C 0.046 3.954 16 H 0.083 0.917 17 C 0.015 3.985 18 O -0.350 6.350 19 C -0.286 4.286 20 C -0.187 4.187 21 C -0.171 4.171 22 C -0.385 4.385 23 S 0.456 5.544 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.022 0.978 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.157 0.843 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.220 0.780 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.767 1.277 13.561 16.199 hybrid contribution -1.027 1.093 0.241 1.519 sum -9.794 2.370 13.802 17.089 Atomic orbital electron populations 1.22560 0.98597 1.01679 1.01224 1.21812 0.90852 0.98340 0.91655 0.91034 1.21621 1.00833 0.98358 0.92732 1.18986 0.88095 0.96258 0.97247 1.21354 0.91827 1.34023 1.08389 0.93267 1.24971 0.97134 0.95818 0.96394 1.69983 1.02029 1.44528 1.36725 0.86717 0.78147 0.80026 0.83786 1.20955 1.21363 1.20056 1.60636 1.57787 1.08282 1.01970 1.20102 0.96240 0.93095 0.85982 0.91700 1.22071 0.87094 0.90436 0.98938 1.86570 1.16456 1.36202 1.95777 1.24529 1.03544 1.00646 0.99879 1.20001 1.03654 1.01787 0.93252 1.19986 1.02256 0.94787 1.00061 1.25901 1.06310 1.03706 1.02628 1.84857 1.47828 1.15527 1.06209 0.93795 0.92158 0.92693 0.93465 0.93616 0.97834 0.94272 0.93391 0.84340 0.92791 0.94645 0.78010 0.85133 0.85220 0.82581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 9.15 37.16 0.34 -2.11 16 2 C 0.08 1.38 2.38 -67.71 -0.16 1.22 16 3 H 0.07 1.22 7.10 -51.93 -0.37 0.85 16 4 C -0.10 -2.03 4.83 -26.73 -0.13 -2.16 16 5 C 0.03 0.82 4.86 -27.89 -0.14 0.69 16 6 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 7 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -27.33 13.29 55.43 0.74 -26.59 16 10 Si 0.88 22.24 29.54 -169.99 -5.02 17.22 16 11 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 N -0.66 -10.84 5.25 -100.95 -0.53 -11.37 16 15 C 0.16 2.27 2.65 -68.86 -0.18 2.09 16 16 H 0.07 0.84 7.09 -51.93 -0.37 0.47 16 17 C 0.09 1.40 6.77 37.16 0.25 1.66 16 18 O -0.55 -9.18 12.44 -35.23 -0.44 -9.62 16 19 C -0.17 -2.33 4.81 -36.00 -0.17 -2.50 16 20 C -0.16 -1.91 10.04 -41.21 -0.41 -2.32 16 21 C -0.14 -1.61 10.18 -41.21 -0.42 -2.03 16 22 C -0.25 -2.97 11.23 29.04 0.33 -2.64 16 23 S 0.19 2.72 22.15 -107.50 -2.38 0.34 16 24 H 0.04 0.53 7.43 -51.93 -0.39 0.14 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.73 8.13 -51.93 -0.42 0.30 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.04 1.12 7.75 -51.93 -0.40 0.72 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.34 5.38 7.89 -39.29 -0.31 5.07 16 33 H 0.05 0.87 7.38 -51.93 -0.38 0.49 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.37 5.12 9.12 45.56 0.42 5.53 16 36 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.16 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 328.27 15.07 4.95 4.95 Total: -1.00 -32.23 328.27 -8.94 -41.18 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -5.15 Total: 5.81 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -1.11 Total: -21.91 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.21 Total: -37.96 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.44 Total: -9.62 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -2.38 Total: 0.34 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.23 -8.94 -41.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490100.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.772 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds