Wall clock time and date at job start Mon Mar 30 2020 00:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 C 1.50697 * 109.47466 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99890 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00428 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99563 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00432 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46838 * 89.99826 * 10 8 6 12 12 H 1.48497 * 109.47419 * 209.99978 * 10 8 6 13 13 H 1.48499 * 109.47011 * 330.00539 * 10 8 6 14 14 N 1.46901 * 109.46937 * 120.00309 * 2 1 3 15 15 C 1.46900 * 110.99981 * 274.99476 * 14 2 1 16 16 H 1.09001 * 109.46667 * 35.00893 * 15 14 2 17 17 C 1.52995 * 109.47136 * 275.00290 * 15 14 2 18 18 O 1.42899 * 109.47467 * 295.00017 * 17 15 14 19 19 C 1.50709 * 109.46801 * 155.00321 * 15 14 2 20 20 C 1.33389 * 125.19895 * 220.00448 * 19 15 14 21 21 C 1.38427 * 114.92020 * 179.97438 * 20 19 15 22 22 C 1.33392 * 114.91604 * 359.97438 * 21 20 19 23 23 S 1.75882 * 125.20328 * 39.69832 * 19 15 14 24 24 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 25 25 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 26 26 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 28 28 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 29 29 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 30 30 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 31 31 H 0.97002 * 119.99731 * 180.02562 * 9 8 6 32 32 H 1.00900 * 111.00332 * 38.95526 * 14 2 1 33 33 H 1.08995 * 109.47478 * 55.00626 * 17 15 14 34 34 H 1.09005 * 109.46704 * 174.99809 * 17 15 14 35 35 H 0.96695 * 114.00253 * 180.02562 * 18 17 15 36 36 H 1.08004 * 122.54113 * 359.97438 * 20 19 15 37 37 H 1.07994 * 122.54054 * 179.97438 * 21 20 19 38 38 H 1.08000 * 125.20036 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 6 4.0670 -1.3232 -2.5445 7 1 3.3685 -1.8030 -3.2141 8 6 5.4182 -1.3593 -2.8165 9 7 6.2688 -0.7746 -2.0014 10 14 6.0409 -2.2398 -4.3417 11 1 6.0901 -1.2856 -5.4787 12 1 7.4025 -2.7734 -4.0841 13 1 5.1249 -3.3601 -4.6751 14 7 2.0196 -0.6926 1.1994 15 6 2.0825 0.2225 2.3469 16 1 1.2576 0.9328 2.2907 17 6 3.4112 0.9807 2.3223 18 8 4.4881 0.0610 2.5128 19 6 1.9787 -0.5679 3.6259 20 6 1.2866 -0.1977 4.7044 21 6 1.3372 -1.0875 5.7636 22 6 2.0698 -2.1805 5.5449 23 16 2.7452 -2.1229 3.9219 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.7515 -1.7715 -1.2057 28 1 1.6053 -0.2617 -2.1370 29 1 3.8531 0.4369 -1.3574 30 1 3.9994 -1.0728 -0.4261 31 1 7.2194 -0.7996 -2.1929 32 1 1.4496 -1.4980 1.4100 33 1 3.5264 1.4810 1.3608 34 1 3.4210 1.7223 3.1211 35 1 5.3628 0.4732 2.5089 36 1 0.7291 0.7263 4.7481 37 1 0.8224 -0.9103 6.6963 38 1 2.2225 -2.9801 6.2547 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490100.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:16 Heat of formation + Delta-G solvation = -47.868559 kcal Electronic energy + Delta-G solvation = -18706.931601 eV Core-core repulsion = 15867.760483 eV Total energy + Delta-G solvation = -2839.171118 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.74060 -38.11011 -37.12410 -35.29048 -33.67516 -31.31436 -29.56679 -28.09613 -26.96057 -24.98097 -23.31673 -22.19338 -21.36261 -19.96001 -18.39816 -18.20448 -18.11667 -16.54250 -16.48134 -16.31897 -15.59177 -15.18483 -14.89832 -14.50166 -14.36459 -13.96877 -13.66874 -13.65168 -13.39064 -13.29598 -13.13154 -12.84190 -12.70464 -12.50504 -12.30673 -12.08692 -11.77903 -11.49480 -11.34524 -11.18682 -10.93081 -10.73881 -10.43896 -9.49821 -9.23934 -9.13479 -8.09884 -6.19554 0.19798 0.89083 1.37740 1.40016 1.41798 1.52442 1.92651 2.45537 3.19726 3.22358 3.47665 3.84148 4.06560 4.20988 4.31574 4.40512 4.44871 4.54815 4.60576 4.67376 4.76312 4.79484 4.84726 5.00781 5.05850 5.10848 5.25789 5.30227 5.45262 5.49850 5.62391 5.67591 5.93549 6.10702 6.27186 6.39257 6.54777 7.00296 7.01360 7.47652 9.00877 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.023550 B = 0.004915 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.650607 B = 5695.359424 C = 6164.584972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.091 3.909 3 H 0.065 0.935 4 C -0.088 4.088 5 C 0.046 3.954 6 C -0.544 4.544 7 H 0.051 0.949 8 C 0.002 3.998 9 N -0.927 5.927 10 Si 0.957 3.043 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.267 1.267 14 N -0.676 5.676 15 C 0.160 3.840 16 H 0.087 0.913 17 C 0.091 3.909 18 O -0.568 6.568 19 C -0.180 4.180 20 C -0.145 4.145 21 C -0.141 4.141 22 C -0.238 4.238 23 S 0.118 5.882 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.042 0.958 28 H 0.049 0.951 29 H -0.025 1.025 30 H 0.006 0.994 31 H 0.259 0.741 32 H 0.339 0.661 33 H 0.032 0.968 34 H 0.062 0.938 35 H 0.381 0.619 36 H 0.155 0.845 37 H 0.161 0.839 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.749 2.771 15.271 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 H 0.084 0.916 4 C -0.126 4.126 5 C 0.009 3.991 6 C -0.582 4.582 7 H 0.070 0.930 8 C -0.196 4.196 9 N -0.568 5.568 10 Si 0.782 3.218 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.191 1.191 14 N -0.308 5.308 15 C 0.049 3.951 16 H 0.105 0.895 17 C 0.012 3.988 18 O -0.374 6.374 19 C -0.298 4.298 20 C -0.176 4.176 21 C -0.172 4.172 22 C -0.374 4.374 23 S 0.383 5.617 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.068 0.932 29 H -0.007 1.007 30 H 0.025 0.975 31 H 0.068 0.932 32 H 0.159 0.841 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.229 0.771 36 H 0.173 0.827 37 H 0.178 0.822 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -10.474 1.469 14.312 17.796 hybrid contribution -0.481 1.061 0.088 1.168 sum -10.955 2.530 14.400 18.270 Atomic orbital electron populations 1.22408 0.95391 1.02378 1.02651 1.21579 0.93232 0.97093 0.89974 0.91640 1.21453 0.96901 0.98817 0.95473 1.18743 0.91831 0.93622 0.94945 1.21815 0.92484 1.34500 1.09421 0.93028 1.25891 0.97391 0.96520 0.99797 1.70124 1.02392 1.45604 1.38655 0.85577 0.77556 0.79008 0.79653 1.19809 1.20860 1.19103 1.60493 1.58407 1.09087 1.02796 1.20110 0.96330 0.93077 0.85536 0.89548 1.22199 0.87115 0.90742 0.98707 1.86555 1.17473 1.37571 1.95798 1.24421 1.04803 1.00272 1.00278 1.20353 1.02332 1.02429 0.92518 1.20351 1.01798 0.94083 1.00936 1.26128 1.05571 1.04623 1.01060 1.85105 1.49904 1.17450 1.09271 0.91638 0.91410 0.92358 0.93922 0.93206 1.00651 0.97528 0.93187 0.84139 0.94954 0.92003 0.77123 0.82718 0.82203 0.80416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 9.15 71.98 0.66 -3.55 16 2 C 0.09 3.01 2.38 44.92 0.11 3.12 16 3 H 0.07 2.24 7.10 -2.39 -0.02 2.22 16 4 C -0.09 -3.75 4.83 30.59 0.15 -3.60 16 5 C 0.05 2.51 4.86 29.85 0.15 2.66 16 6 C -0.54 -32.41 9.11 25.60 0.23 -32.18 16 7 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 8 C 0.00 0.09 5.46 84.65 0.46 0.56 16 9 N -0.93 -58.22 13.29 21.45 0.28 -57.94 16 10 Si 0.96 46.01 29.54 68.60 2.03 48.03 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 13 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 14 N -0.68 -22.53 5.25 -473.31 -2.49 -25.02 16 15 C 0.16 4.50 2.65 44.17 0.12 4.62 16 16 H 0.09 2.03 7.09 -2.39 -0.02 2.01 16 17 C 0.09 2.76 6.77 71.98 0.49 3.24 16 18 O -0.57 -19.96 12.44 -148.98 -1.85 -21.81 16 19 C -0.18 -4.77 4.81 24.59 0.12 -4.65 16 20 C -0.14 -3.13 10.04 21.22 0.21 -2.92 16 21 C -0.14 -2.80 10.18 21.22 0.22 -2.58 16 22 C -0.24 -5.21 11.23 66.72 0.75 -4.46 16 23 S 0.12 3.39 22.15 -56.49 -1.25 2.14 16 24 H 0.06 1.37 7.43 -2.38 -0.02 1.35 16 25 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 27 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 29 H -0.02 -1.48 8.14 -2.39 -0.02 -1.50 16 30 H 0.01 0.38 7.75 -2.39 -0.02 0.37 16 31 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 32 H 0.34 10.88 7.89 -89.69 -0.71 10.17 16 33 H 0.03 1.09 7.38 -2.39 -0.02 1.07 16 34 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.38 11.16 9.12 -74.06 -0.68 10.49 16 36 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 37 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 38 H 0.18 2.99 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -70.84 328.27 0.04 -70.79 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -0.33 Total: 23.55 kcal Atomic # 6 Polarization: -43.40 SS G_CDS: 3.65 Total: -39.75 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -2.20 Total: -82.96 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -1.85 Total: -21.81 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -1.25 Total: 2.14 kcal Total: -70.84 0.04 -70.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490100.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.924 kcal (2) G-P(sol) polarization free energy of solvation -70.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds