Wall clock time and date at job start Mon Mar 30 2020 00:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47117 * 2 1 4 4 C 1.53005 * 109.47194 * 240.00311 * 2 1 3 5 5 C 1.53001 * 109.47271 * 174.36651 * 4 2 1 6 6 C 1.50699 * 109.47227 * 181.77295 * 5 4 2 7 7 H 1.08000 * 119.99594 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99914 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99957 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99927 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47188 * 59.99725 * 10 8 6 12 12 H 1.48492 * 109.47230 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46670 * 299.99972 * 10 8 6 14 14 N 1.46891 * 109.47288 * 120.00120 * 2 1 3 15 15 C 1.46901 * 111.00281 * 226.89342 * 14 2 1 16 16 H 1.09001 * 109.46879 * 326.11072 * 15 14 2 17 17 C 1.53002 * 109.47110 * 86.10802 * 15 14 2 18 18 O 1.42901 * 109.46912 * 64.73004 * 17 15 14 19 19 C 1.50697 * 109.47471 * 206.10830 * 15 14 2 20 20 C 1.33392 * 125.20660 * 139.99833 * 19 15 14 21 21 C 1.38424 * 114.92574 * 179.97438 * 20 19 15 22 22 C 1.33393 * 114.91590 * 359.97438 * 21 20 19 23 23 S 1.75881 * 109.59628 * 0.02562 * 22 21 20 24 24 H 1.09006 * 109.47101 * 64.85913 * 1 2 3 25 25 H 1.09002 * 109.47438 * 184.85546 * 1 2 3 26 26 H 1.09001 * 109.47348 * 304.86169 * 1 2 3 27 27 H 1.09001 * 109.46581 * 294.36325 * 4 2 1 28 28 H 1.08996 * 109.47399 * 54.36216 * 4 2 1 29 29 H 1.08999 * 109.46998 * 301.77594 * 5 4 2 30 30 H 1.08999 * 109.47078 * 61.77040 * 5 4 2 31 31 H 0.97003 * 119.99374 * 180.02562 * 9 8 6 32 32 H 1.00907 * 111.00348 * 102.93842 * 14 2 1 33 33 H 1.08999 * 109.47047 * 184.72803 * 17 15 14 34 34 H 1.08997 * 109.47121 * 304.73415 * 17 15 14 35 35 H 0.96700 * 114.00121 * 179.97438 * 18 17 15 36 36 H 1.08003 * 122.53526 * 359.95921 * 20 19 15 37 37 H 1.07997 * 122.53677 * 180.02562 * 21 20 19 38 38 H 1.07999 * 125.19652 * 180.26570 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5634 -0.5997 -1.3221 6 6 4.0617 -1.2725 -2.5752 7 1 3.3617 -1.7397 -3.2521 8 6 5.4111 -1.2908 -2.8579 9 7 6.2633 -0.7216 -2.0338 10 14 6.0286 -2.1242 -4.4114 11 1 5.4221 -1.4700 -5.5987 12 1 7.5071 -2.0053 -4.4827 13 1 5.6474 -3.5592 -4.3883 14 7 2.0196 -0.6925 1.1993 15 6 3.0787 0.0826 1.8593 16 1 3.6665 0.6085 1.1070 17 6 2.4479 1.0976 2.8148 18 8 1.7686 0.4054 3.8643 19 6 3.9737 -0.8489 2.6353 20 6 5.3018 -0.7521 2.7131 21 6 5.9132 -1.7233 3.4871 22 6 5.0814 -2.6086 4.0383 23 16 3.4268 -2.2294 3.5780 24 1 -0.3633 0.4366 -0.9304 25 1 -0.3634 -1.0240 0.0870 26 1 -0.3634 0.5874 0.8432 27 1 1.7614 -1.7739 -1.2002 28 1 1.5966 -0.2690 -2.1364 29 1 3.8435 0.4535 -1.3393 30 1 4.0083 -1.0798 -0.4505 31 1 7.2126 -0.7341 -2.2329 32 1 2.3390 -1.6229 0.9747 33 1 3.2277 1.7286 3.2411 34 1 1.7368 1.7174 2.2687 35 1 1.3441 0.9876 4.5091 36 1 5.8581 0.0251 2.2101 37 1 6.9824 -1.7609 3.6342 38 1 5.3783 -3.4300 4.6735 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490101.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:18 Heat of formation + Delta-G solvation = -29.010088 kcal Electronic energy + Delta-G solvation = -18943.873092 eV Core-core repulsion = 16105.519738 eV Total energy + Delta-G solvation = -2838.353354 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.51218 -36.84544 -36.04598 -33.25856 -32.16894 -29.59456 -28.40856 -27.00563 -24.96870 -23.73073 -21.66516 -20.75051 -20.08568 -18.65652 -17.11682 -16.99831 -16.28630 -15.18590 -15.10988 -14.51226 -14.40496 -13.91703 -13.49515 -13.01384 -12.69185 -12.59019 -12.49800 -12.27925 -12.15982 -11.75322 -11.44113 -11.28292 -11.18060 -10.93639 -10.85205 -10.52446 -10.23794 -10.22396 -9.84916 -9.74462 -9.30104 -9.14261 -8.36013 -8.24949 -7.95339 -7.90223 -6.01009 -4.03143 1.42232 2.10136 2.52066 3.17361 3.32171 3.36553 3.39191 4.44898 4.46311 4.58797 5.03248 5.34675 5.39640 5.39927 5.50662 5.66816 5.74399 5.78865 5.91398 5.96577 6.01657 6.05994 6.21434 6.35232 6.45725 6.53860 6.56386 6.69972 6.82304 6.88479 7.07965 7.47265 7.61957 7.77547 7.83379 7.88076 7.97223 8.41412 9.02662 9.60919 11.09712 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.016197 B = 0.006600 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.291151 B = 4241.115582 C = 5407.289428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.078 3.922 3 H 0.062 0.938 4 C -0.136 4.136 5 C 0.022 3.978 6 C -0.522 4.522 7 H 0.053 0.947 8 C 0.059 3.941 9 N -0.892 5.892 10 Si 0.890 3.110 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.668 5.668 15 C 0.157 3.843 16 H 0.084 0.916 17 C 0.093 3.907 18 O -0.551 6.551 19 C -0.160 4.160 20 C -0.138 4.138 21 C -0.130 4.130 22 C -0.244 4.244 23 S 0.148 5.852 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.011 0.989 30 H 0.016 0.984 31 H 0.260 0.740 32 H 0.348 0.652 33 H 0.042 0.958 34 H 0.047 0.953 35 H 0.366 0.634 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.240 2.176 12.613 14.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.031 4.031 3 H 0.080 0.920 4 C -0.174 4.174 5 C -0.015 4.015 6 C -0.560 4.560 7 H 0.071 0.929 8 C -0.142 4.142 9 N -0.531 5.531 10 Si 0.718 3.282 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.301 5.301 15 C 0.045 3.955 16 H 0.102 0.898 17 C 0.014 3.986 18 O -0.354 6.354 19 C -0.279 4.279 20 C -0.169 4.169 21 C -0.162 4.162 22 C -0.380 4.380 23 S 0.412 5.588 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.029 0.971 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.168 0.832 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.211 0.789 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.739 1.267 13.020 15.200 hybrid contribution 2.606 0.539 -1.603 3.106 sum -5.133 1.805 11.418 12.648 Atomic orbital electron populations 1.21733 0.95454 1.01558 1.00137 1.21749 0.94734 0.97397 0.89267 0.92004 1.22279 1.00154 0.99147 0.95834 1.19117 0.88534 0.96713 0.97091 1.21191 0.92053 1.35836 1.06935 0.92885 1.24996 0.97048 0.95525 0.96671 1.69944 1.02361 1.44298 1.36524 0.86693 0.77594 0.80129 0.83801 1.20305 1.21302 1.20270 1.60802 1.36335 1.05841 1.27074 1.20183 0.89622 0.92280 0.93392 0.89836 1.22198 0.94639 0.93139 0.88606 1.86632 1.72971 1.36551 1.39275 1.24333 0.96860 1.01692 1.04969 1.20119 0.93319 1.01595 1.01838 1.20046 1.00599 0.95891 0.99615 1.25714 0.97642 1.05663 1.09013 1.84216 1.05579 1.23508 1.45489 0.93202 0.92832 0.93333 0.92962 0.92737 0.97111 0.96564 0.93042 0.83234 0.93997 0.93464 0.78883 0.84517 0.85059 0.82721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 9.52 37.15 0.35 -1.55 16 2 C 0.08 1.33 2.54 -67.72 -0.17 1.16 16 3 H 0.06 1.06 7.32 -51.93 -0.38 0.68 16 4 C -0.14 -2.76 4.44 -26.73 -0.12 -2.88 16 5 C 0.02 0.56 4.05 -27.88 -0.11 0.45 16 6 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 7 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 10 Si 0.89 21.81 29.54 -169.99 -5.02 16.78 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 N -0.67 -11.34 5.64 -100.96 -0.57 -11.91 16 15 C 0.16 2.60 1.99 -68.86 -0.14 2.46 16 16 H 0.08 1.55 6.83 -51.93 -0.35 1.20 16 17 C 0.09 1.26 6.80 37.16 0.25 1.52 16 18 O -0.55 -7.22 12.43 -35.23 -0.44 -7.66 16 19 C -0.16 -2.73 4.81 -36.00 -0.17 -2.90 16 20 C -0.14 -2.37 10.04 -41.21 -0.41 -2.78 16 21 C -0.13 -2.02 10.18 -41.21 -0.42 -2.44 16 22 C -0.24 -3.57 11.23 29.04 0.33 -3.24 16 23 S 0.15 2.29 22.12 -107.50 -2.38 -0.09 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 1.07 8.05 -51.93 -0.42 0.65 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.02 0.43 6.93 -51.93 -0.36 0.07 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.35 6.52 7.10 -39.29 -0.28 6.24 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.60 7.95 -51.93 -0.41 0.19 16 35 H 0.37 3.10 9.12 45.56 0.42 3.52 16 36 H 0.14 2.35 8.06 -52.48 -0.42 1.92 16 37 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 326.86 15.07 4.93 4.93 Total: -1.00 -30.81 326.86 -8.90 -39.72 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.13 Total: 7.64 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: -1.03 Total: -23.69 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.17 Total: -37.63 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.44 Total: -7.66 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.38 Total: -0.09 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.81 -8.90 -39.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490101.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.709 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds