Wall clock time and date at job start Mon Mar 30 2020 00:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47117 * 2 1 4 4 C 1.53005 * 109.47194 * 240.00311 * 2 1 3 5 5 C 1.53001 * 109.47271 * 174.36651 * 4 2 1 6 6 C 1.50699 * 109.47227 * 181.77295 * 5 4 2 7 7 H 1.08000 * 119.99594 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99914 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99957 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99927 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47188 * 59.99725 * 10 8 6 12 12 H 1.48492 * 109.47230 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46670 * 299.99972 * 10 8 6 14 14 N 1.46891 * 109.47288 * 120.00120 * 2 1 3 15 15 C 1.46901 * 111.00281 * 226.89342 * 14 2 1 16 16 H 1.09001 * 109.46879 * 326.11072 * 15 14 2 17 17 C 1.53002 * 109.47110 * 86.10802 * 15 14 2 18 18 O 1.42901 * 109.46912 * 64.73004 * 17 15 14 19 19 C 1.50697 * 109.47471 * 206.10830 * 15 14 2 20 20 C 1.33392 * 125.20660 * 139.99833 * 19 15 14 21 21 C 1.38424 * 114.92574 * 179.97438 * 20 19 15 22 22 C 1.33393 * 114.91590 * 359.97438 * 21 20 19 23 23 S 1.75881 * 109.59628 * 0.02562 * 22 21 20 24 24 H 1.09006 * 109.47101 * 64.85913 * 1 2 3 25 25 H 1.09002 * 109.47438 * 184.85546 * 1 2 3 26 26 H 1.09001 * 109.47348 * 304.86169 * 1 2 3 27 27 H 1.09001 * 109.46581 * 294.36325 * 4 2 1 28 28 H 1.08996 * 109.47399 * 54.36216 * 4 2 1 29 29 H 1.08999 * 109.46998 * 301.77594 * 5 4 2 30 30 H 1.08999 * 109.47078 * 61.77040 * 5 4 2 31 31 H 0.97003 * 119.99374 * 180.02562 * 9 8 6 32 32 H 1.00907 * 111.00348 * 102.93842 * 14 2 1 33 33 H 1.08999 * 109.47047 * 184.72803 * 17 15 14 34 34 H 1.08997 * 109.47121 * 304.73415 * 17 15 14 35 35 H 0.96700 * 114.00121 * 179.97438 * 18 17 15 36 36 H 1.08003 * 122.53526 * 359.95921 * 20 19 15 37 37 H 1.07997 * 122.53677 * 180.02562 * 21 20 19 38 38 H 1.07999 * 125.19652 * 180.26570 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5634 -0.5997 -1.3221 6 6 4.0617 -1.2725 -2.5752 7 1 3.3617 -1.7397 -3.2521 8 6 5.4111 -1.2908 -2.8579 9 7 6.2633 -0.7216 -2.0338 10 14 6.0286 -2.1242 -4.4114 11 1 5.4221 -1.4700 -5.5987 12 1 7.5071 -2.0053 -4.4827 13 1 5.6474 -3.5592 -4.3883 14 7 2.0196 -0.6925 1.1993 15 6 3.0787 0.0826 1.8593 16 1 3.6665 0.6085 1.1070 17 6 2.4479 1.0976 2.8148 18 8 1.7686 0.4054 3.8643 19 6 3.9737 -0.8489 2.6353 20 6 5.3018 -0.7521 2.7131 21 6 5.9132 -1.7233 3.4871 22 6 5.0814 -2.6086 4.0383 23 16 3.4268 -2.2294 3.5780 24 1 -0.3633 0.4366 -0.9304 25 1 -0.3634 -1.0240 0.0870 26 1 -0.3634 0.5874 0.8432 27 1 1.7614 -1.7739 -1.2002 28 1 1.5966 -0.2690 -2.1364 29 1 3.8435 0.4535 -1.3393 30 1 4.0083 -1.0798 -0.4505 31 1 7.2126 -0.7341 -2.2329 32 1 2.3390 -1.6229 0.9747 33 1 3.2277 1.7286 3.2411 34 1 1.7368 1.7174 2.2687 35 1 1.3441 0.9876 4.5091 36 1 5.8581 0.0251 2.2101 37 1 6.9824 -1.7609 3.6342 38 1 5.3783 -3.4300 4.6735 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490101.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:17 Heat of formation + Delta-G solvation = -50.007173 kcal Electronic energy + Delta-G solvation = -18944.783593 eV Core-core repulsion = 16105.519738 eV Total energy + Delta-G solvation = -2839.263855 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.81537 -38.15712 -37.22933 -35.21031 -33.67068 -31.40251 -29.68755 -28.18781 -26.90921 -24.96466 -23.34972 -22.15918 -21.55343 -19.94897 -18.53929 -18.23914 -18.12072 -16.58378 -16.45597 -16.37809 -15.73248 -15.27472 -14.76752 -14.53697 -14.28245 -14.07527 -13.90555 -13.63098 -13.42378 -13.26294 -13.12845 -12.85671 -12.77048 -12.40886 -12.38097 -12.08644 -11.86107 -11.60801 -11.49420 -11.26413 -11.10870 -10.77873 -10.55840 -9.49639 -9.33851 -9.17626 -8.20406 -6.31295 0.17724 0.86828 1.27869 1.36690 1.38945 1.46713 1.90054 2.38510 3.12024 3.19158 3.45058 3.83824 4.03315 4.24740 4.29039 4.40057 4.45676 4.61398 4.62954 4.67088 4.75109 4.78521 4.79401 5.01966 5.06617 5.09664 5.20789 5.27125 5.45938 5.46711 5.51167 5.61085 5.67939 5.82971 6.16286 6.24225 6.36369 6.84261 7.07945 7.37414 8.89598 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.016197 B = 0.006600 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.291151 B = 4241.115582 C = 5407.289428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.084 3.916 3 H 0.058 0.942 4 C -0.124 4.124 5 C 0.035 3.965 6 C -0.547 4.547 7 H 0.055 0.945 8 C 0.005 3.995 9 N -0.924 5.924 10 Si 0.958 3.042 11 H -0.268 1.268 12 H -0.283 1.283 13 H -0.270 1.270 14 N -0.658 5.658 15 C 0.154 3.846 16 H 0.052 0.948 17 C 0.103 3.897 18 O -0.563 6.563 19 C -0.179 4.179 20 C -0.158 4.158 21 C -0.147 4.147 22 C -0.236 4.236 23 S 0.159 5.841 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.057 0.943 29 H -0.016 1.016 30 H -0.006 1.006 31 H 0.262 0.738 32 H 0.335 0.665 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.388 0.612 36 H 0.123 0.877 37 H 0.149 0.851 38 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.214 1.497 12.930 14.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.026 4.026 3 H 0.077 0.923 4 C -0.163 4.163 5 C -0.002 4.002 6 C -0.585 4.585 7 H 0.073 0.927 8 C -0.193 4.193 9 N -0.564 5.564 10 Si 0.783 3.217 11 H -0.193 1.193 12 H -0.208 1.208 13 H -0.195 1.195 14 N -0.289 5.289 15 C 0.042 3.958 16 H 0.070 0.930 17 C 0.024 3.976 18 O -0.370 6.370 19 C -0.297 4.297 20 C -0.190 4.190 21 C -0.177 4.177 22 C -0.371 4.371 23 S 0.423 5.577 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.002 0.998 30 H 0.012 0.988 31 H 0.070 0.930 32 H 0.153 0.847 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.237 0.763 36 H 0.141 0.859 37 H 0.167 0.833 38 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -8.738 0.609 13.353 15.969 hybrid contribution 2.928 0.752 -1.665 3.451 sum -5.810 1.361 11.688 13.123 Atomic orbital electron populations 1.21642 0.92789 1.02021 1.01423 1.21723 0.96632 0.96583 0.87642 0.92331 1.22137 0.96626 0.99648 0.97886 1.18924 0.91821 0.94286 0.95190 1.21656 0.92638 1.36205 1.08044 0.92686 1.25887 0.97323 0.96109 1.00022 1.70081 1.02624 1.45329 1.38339 0.85614 0.77087 0.79230 0.79810 1.19258 1.20808 1.19466 1.60971 1.36142 1.05166 1.26626 1.20196 0.89518 0.92622 0.93445 0.92990 1.22003 0.95114 0.92006 0.88465 1.86562 1.73149 1.37643 1.39654 1.24483 0.97008 1.02613 1.05602 1.20266 0.93754 1.02235 1.02719 1.20234 1.01786 0.95853 0.99837 1.26095 0.96810 1.05827 1.08404 1.84076 1.06271 1.22444 1.44864 0.92012 0.92777 0.91925 0.93061 0.92446 0.99792 0.98768 0.92961 0.84651 0.93029 0.92468 0.76332 0.85902 0.83311 0.79594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.27 9.52 71.98 0.69 -2.59 16 2 C 0.08 2.82 2.54 44.92 0.11 2.94 16 3 H 0.06 2.02 7.32 -2.39 -0.02 2.00 16 4 C -0.12 -5.10 4.44 30.60 0.14 -4.96 16 5 C 0.03 1.82 4.05 29.85 0.12 1.94 16 6 C -0.55 -31.46 9.11 25.60 0.23 -31.23 16 7 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 8 C 0.01 0.29 5.46 84.66 0.46 0.76 16 9 N -0.92 -56.07 13.29 21.45 0.28 -55.79 16 10 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 14 N -0.66 -22.36 5.64 -473.32 -2.67 -25.03 16 15 C 0.15 5.21 1.99 44.17 0.09 5.30 16 16 H 0.05 2.07 6.83 -2.39 -0.02 2.05 16 17 C 0.10 2.72 6.80 71.98 0.49 3.21 16 18 O -0.56 -13.83 12.43 -148.98 -1.85 -15.68 16 19 C -0.18 -6.20 4.81 24.59 0.12 -6.09 16 20 C -0.16 -5.63 10.04 21.22 0.21 -5.42 16 21 C -0.15 -4.51 10.18 21.22 0.22 -4.29 16 22 C -0.24 -6.53 11.23 66.72 0.75 -5.78 16 23 S 0.16 4.81 22.12 -56.49 -1.25 3.56 16 24 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 25 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.05 2.10 8.05 -2.39 -0.02 2.08 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 30 H -0.01 -0.34 6.93 -2.39 -0.02 -0.35 16 31 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 32 H 0.34 12.75 7.10 -89.69 -0.64 12.11 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.39 7.95 -2.39 -0.02 1.37 16 35 H 0.39 5.68 9.12 -74.06 -0.68 5.00 16 36 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 37 H 0.15 3.92 8.06 -2.91 -0.02 3.89 16 38 H 0.19 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -66.38 326.86 -0.10 -66.47 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -0.26 Total: 25.84 kcal Atomic # 6 Polarization: -49.83 SS G_CDS: 3.62 Total: -46.21 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -2.39 Total: -80.82 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -1.85 Total: -15.68 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 4.81 SS G_CDS: -1.25 Total: 3.56 kcal Total: -66.38 -0.10 -66.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490101.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.465 kcal (2) G-P(sol) polarization free energy of solvation -66.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds