Wall clock time and date at job start Mon Mar 30 2020 01:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30916 * 1 3 3 Si 1.86798 * 120.00378 * 2 1 4 4 H 1.48503 * 109.46963 * 239.99838 * 3 2 1 5 5 H 1.48498 * 109.47014 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47044 * 120.00128 * 3 2 1 7 7 C 1.39830 * 119.99588 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00069 * 193.60383 * 7 2 1 9 9 C 1.41086 * 120.00176 * 13.59963 * 7 2 1 10 10 C 1.40915 * 120.14763 * 27.80782 * 9 7 2 11 11 C 1.36283 * 119.84247 * 180.02562 * 10 9 7 12 12 C 1.39655 * 120.15626 * 359.97438 * 11 10 9 13 13 N 1.38671 * 119.84745 * 179.72600 * 12 11 10 14 14 C 1.40508 * 120.00144 * 144.65356 * 13 12 11 15 15 C 1.40316 * 126.08757 * 350.35773 * 14 13 12 16 16 N 1.30821 * 108.33457 * 179.81719 * 15 14 13 17 17 N 1.40057 * 108.40075 * 0.44687 * 16 15 14 18 18 C 1.46499 * 126.05011 * 179.73724 * 17 16 15 19 19 C 1.53001 * 117.49961 * 163.59288 * 18 17 16 20 20 C 1.52995 * 60.00310 * 252.51116 * 19 18 17 21 21 C 1.35844 * 107.90346 * 359.71292 * 17 16 15 22 22 C 1.39643 * 120.29982 * 0.02562 * 12 11 10 23 23 C 1.36284 * 120.15829 * 0.02562 * 22 12 11 24 24 H 0.97011 * 119.99804 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.07835 * 359.97438 * 10 9 7 26 26 H 1.08006 * 119.92563 * 179.97438 * 11 10 9 27 27 H 0.97001 * 120.00267 * 324.64679 * 13 12 11 28 28 H 1.07994 * 125.83346 * 0.02562 * 15 14 13 29 29 H 1.09004 * 115.55177 * 309.30447 * 18 17 16 30 30 H 1.08997 * 117.50224 * 0.02562 * 19 18 17 31 31 H 1.09007 * 117.49364 * 145.02109 * 19 18 17 32 32 H 1.08999 * 117.49975 * 252.51506 * 20 19 18 33 33 H 1.08992 * 117.51933 * 107.48008 * 20 19 18 34 34 H 1.08000 * 126.23276 * 180.02562 * 21 17 16 35 35 H 1.08002 * 119.92131 * 180.02562 * 22 12 11 36 36 H 1.08002 * 120.08410 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 3.0970 1.6962 -1.2125 5 1 1.2783 2.7464 0.0006 6 1 3.0971 1.6962 1.2125 7 6 2.0082 -1.2110 0.0005 8 1 3.0655 -1.2241 0.2205 9 6 1.3324 -2.4158 -0.2862 10 6 0.1889 -2.4072 -1.1096 11 6 -0.4595 -3.5745 -1.3821 12 6 0.0073 -4.7775 -0.8479 13 7 -0.6606 -5.9608 -1.1247 14 6 0.0622 -7.1554 -1.2818 15 6 1.4575 -7.2710 -1.3748 16 7 1.7574 -8.5372 -1.5099 17 7 0.5670 -9.2750 -1.5187 18 6 0.4550 -10.7293 -1.6559 19 6 -0.8747 -11.3757 -1.2624 20 6 0.3560 -11.5546 -0.3714 21 6 -0.4654 -8.4036 -1.3768 22 6 1.1399 -4.7933 -0.0312 23 6 1.7973 -3.6331 0.2503 24 1 -0.4850 0.8402 0.0004 25 1 -0.1734 -1.4775 -1.5230 26 1 -1.3363 -3.5694 -2.0127 27 1 -1.6269 -5.9639 -1.2099 28 1 2.1635 -6.4546 -1.3374 29 1 0.9987 -11.1657 -2.4939 30 1 -1.6664 -10.7190 -0.9018 31 1 -1.2062 -12.2375 -1.8418 32 1 0.8343 -12.5340 -0.3645 33 1 0.3747 -11.0156 0.5758 34 1 -1.5148 -8.6570 -1.3448 35 1 1.4958 -5.7271 0.3783 36 1 2.6734 -3.6468 0.8817 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175959249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:02 Heat of formation + Delta-G solvation = 136.431766 kcal Electronic energy + Delta-G solvation = -19001.607324 eV Core-core repulsion = 16067.276868 eV Total energy + Delta-G solvation = -2934.330457 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.89178 -38.06295 -37.13583 -34.90189 -32.95748 -30.61679 -29.82999 -29.18108 -27.70754 -24.50601 -23.42994 -22.81989 -21.07509 -20.98028 -19.91905 -19.75067 -17.43356 -17.21580 -15.88949 -15.83112 -15.39426 -14.87958 -14.52281 -14.02874 -13.74921 -13.27957 -12.96356 -12.59051 -12.43280 -12.00374 -11.88691 -11.84484 -11.52040 -11.14541 -11.06017 -11.04894 -10.87903 -10.50744 -10.42604 -10.12749 -9.73749 -9.34078 -9.07919 -9.00406 -7.64537 -7.53621 -6.68847 -6.33103 -4.19705 2.08736 2.54397 2.75813 3.05388 3.10079 3.12292 3.15330 3.37925 3.48823 3.98500 4.23194 4.39811 4.50812 4.67830 4.68889 5.02811 5.22779 5.32999 5.48922 5.65606 5.72136 5.75194 5.92003 6.05160 6.24269 6.28933 6.71224 6.91952 7.05556 7.13080 7.25063 7.32686 7.53899 7.61561 7.78794 8.00350 8.06505 8.26478 8.43543 8.57891 8.70140 8.94681 9.04086 10.27809 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.057815 B = 0.003372 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.189519 B = 8301.783818 C = 8585.240080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.463 4.463 8 H 0.075 0.925 9 C 0.095 3.905 10 C -0.136 4.136 11 C -0.131 4.131 12 C 0.046 3.954 13 N -0.665 5.665 14 C 0.077 3.923 15 C 0.022 3.978 16 N -0.278 5.278 17 N -0.356 5.356 18 C 0.100 3.900 19 C -0.172 4.172 20 C -0.181 4.181 21 C -0.049 4.049 22 C -0.126 4.126 23 C -0.200 4.200 24 H 0.279 0.721 25 H 0.120 0.880 26 H 0.089 0.911 27 H 0.394 0.606 28 H 0.189 0.811 29 H 0.133 0.867 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.163 0.837 35 H 0.094 0.906 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.120 -15.321 -2.584 15.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.493 4.493 8 H 0.093 0.907 9 C 0.092 3.908 10 C -0.156 4.156 11 C -0.152 4.152 12 C -0.049 4.049 13 N -0.291 5.291 14 C -0.032 4.032 15 C -0.167 4.167 16 N -0.099 5.099 17 N -0.144 5.144 18 C -0.004 4.004 19 C -0.210 4.210 20 C -0.220 4.220 21 C -0.195 4.195 22 C -0.147 4.147 23 C -0.220 4.220 24 H 0.090 0.910 25 H 0.138 0.862 26 H 0.107 0.893 27 H 0.228 0.772 28 H 0.206 0.794 29 H 0.150 0.850 30 H 0.122 0.878 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.181 0.819 35 H 0.112 0.888 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.277 -16.032 -2.696 16.416 hybrid contribution -0.832 1.436 0.176 1.669 sum -3.108 -14.596 -2.520 15.135 Atomic orbital electron populations 1.69830 1.07367 1.28981 1.36958 1.25847 0.94786 1.01093 0.92509 0.86371 0.80035 0.80430 0.79850 1.18954 1.20473 1.19142 1.19426 0.96631 0.90855 1.42426 0.90659 1.17597 0.91741 0.92074 0.89393 1.20941 0.98290 0.96279 1.00111 1.20290 1.00847 0.92538 1.01550 1.17127 0.98761 0.84471 1.04522 1.40762 1.06656 1.02939 1.78702 1.17789 0.91556 0.86741 1.07077 1.23974 0.95017 0.94303 1.03358 1.77177 1.05832 1.03829 1.23068 1.47299 1.03374 1.04134 1.59600 1.21446 1.02713 0.76306 0.99931 1.23354 0.91582 1.02742 1.03320 1.23461 1.01064 1.01719 0.95742 1.21418 0.94108 0.88530 1.15428 1.20262 0.97856 0.97277 0.99321 1.20654 1.03051 0.92873 1.05466 0.91045 0.86187 0.89272 0.77180 0.79428 0.84991 0.87814 0.87073 0.87475 0.88066 0.81936 0.88789 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.82 10.92 55.54 0.61 -20.21 16 2 C 0.07 1.85 5.20 -17.35 -0.09 1.76 16 3 Si 0.91 18.81 29.58 -169.99 -5.03 13.78 16 4 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.46 -12.24 9.03 -37.91 -0.34 -12.58 16 8 H 0.08 1.91 7.88 -52.48 -0.41 1.50 16 9 C 0.09 2.49 5.55 -106.79 -0.59 1.90 16 10 C -0.14 -3.47 8.60 -39.27 -0.34 -3.81 16 11 C -0.13 -2.99 9.90 -39.76 -0.39 -3.39 16 12 C 0.05 0.99 6.24 -83.72 -0.52 0.46 16 13 N -0.67 -12.05 5.51 -8.49 -0.05 -12.10 16 14 C 0.08 1.33 6.61 -83.95 -0.56 0.78 16 15 C 0.02 0.40 9.89 -17.20 -0.17 0.23 16 16 N -0.28 -4.85 12.56 30.71 0.39 -4.46 16 17 N -0.36 -5.21 3.96 -54.49 -0.22 -5.43 16 18 C 0.10 1.04 7.14 -67.93 -0.48 0.56 16 19 C -0.17 -1.28 9.99 -26.73 -0.27 -1.54 16 20 C -0.18 -1.55 10.46 -26.73 -0.28 -1.83 16 21 C -0.05 -0.72 10.88 -16.63 -0.18 -0.90 16 22 C -0.13 -2.82 7.76 -39.76 -0.31 -3.12 16 23 C -0.20 -4.86 9.74 -39.27 -0.38 -5.24 16 24 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 25 H 0.12 3.17 6.24 -52.49 -0.33 2.84 16 26 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 27 H 0.39 6.21 8.94 -40.82 -0.36 5.84 16 28 H 0.19 3.48 6.37 -52.49 -0.33 3.14 16 29 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.10 0.79 7.02 -51.93 -0.36 0.43 16 31 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.16 1.86 7.26 -52.49 -0.38 1.48 16 35 H 0.09 1.96 6.22 -52.49 -0.33 1.64 16 36 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 307.77 15.07 4.64 4.64 Total: -1.00 -29.02 307.77 -8.75 -37.77 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -4.18 Total: 12.73 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: -4.91 Total: -26.72 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.73 Total: -42.20 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.02 -8.75 -37.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175959249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.202 kcal (2) G-P(sol) polarization free energy of solvation -29.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds