Wall clock time and date at job start Mon Mar 30 2020 01:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30916 * 1 3 3 Si 1.86798 * 120.00378 * 2 1 4 4 H 1.48503 * 109.46963 * 239.99838 * 3 2 1 5 5 H 1.48498 * 109.47014 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47044 * 120.00128 * 3 2 1 7 7 C 1.39830 * 119.99588 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00069 * 193.60383 * 7 2 1 9 9 C 1.41086 * 120.00176 * 13.59963 * 7 2 1 10 10 C 1.40915 * 120.14763 * 27.80782 * 9 7 2 11 11 C 1.36283 * 119.84247 * 180.02562 * 10 9 7 12 12 C 1.39655 * 120.15626 * 359.97438 * 11 10 9 13 13 N 1.38671 * 119.84745 * 179.72600 * 12 11 10 14 14 C 1.40508 * 120.00144 * 144.65356 * 13 12 11 15 15 C 1.40316 * 126.08757 * 350.35773 * 14 13 12 16 16 N 1.30821 * 108.33457 * 179.81719 * 15 14 13 17 17 N 1.40057 * 108.40075 * 0.44687 * 16 15 14 18 18 C 1.46499 * 126.05011 * 179.73724 * 17 16 15 19 19 C 1.53001 * 117.49961 * 163.59288 * 18 17 16 20 20 C 1.52995 * 60.00310 * 252.51116 * 19 18 17 21 21 C 1.35844 * 107.90346 * 359.71292 * 17 16 15 22 22 C 1.39643 * 120.29982 * 0.02562 * 12 11 10 23 23 C 1.36284 * 120.15829 * 0.02562 * 22 12 11 24 24 H 0.97011 * 119.99804 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.07835 * 359.97438 * 10 9 7 26 26 H 1.08006 * 119.92563 * 179.97438 * 11 10 9 27 27 H 0.97001 * 120.00267 * 324.64679 * 13 12 11 28 28 H 1.07994 * 125.83346 * 0.02562 * 15 14 13 29 29 H 1.09004 * 115.55177 * 309.30447 * 18 17 16 30 30 H 1.08997 * 117.50224 * 0.02562 * 19 18 17 31 31 H 1.09007 * 117.49364 * 145.02109 * 19 18 17 32 32 H 1.08999 * 117.49975 * 252.51506 * 20 19 18 33 33 H 1.08992 * 117.51933 * 107.48008 * 20 19 18 34 34 H 1.08000 * 126.23276 * 180.02562 * 21 17 16 35 35 H 1.08002 * 119.92131 * 180.02562 * 22 12 11 36 36 H 1.08002 * 120.08410 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 3.0970 1.6962 -1.2125 5 1 1.2783 2.7464 0.0006 6 1 3.0971 1.6962 1.2125 7 6 2.0082 -1.2110 0.0005 8 1 3.0655 -1.2241 0.2205 9 6 1.3324 -2.4158 -0.2862 10 6 0.1889 -2.4072 -1.1096 11 6 -0.4595 -3.5745 -1.3821 12 6 0.0073 -4.7775 -0.8479 13 7 -0.6606 -5.9608 -1.1247 14 6 0.0622 -7.1554 -1.2818 15 6 1.4575 -7.2710 -1.3748 16 7 1.7574 -8.5372 -1.5099 17 7 0.5670 -9.2750 -1.5187 18 6 0.4550 -10.7293 -1.6559 19 6 -0.8747 -11.3757 -1.2624 20 6 0.3560 -11.5546 -0.3714 21 6 -0.4654 -8.4036 -1.3768 22 6 1.1399 -4.7933 -0.0312 23 6 1.7973 -3.6331 0.2503 24 1 -0.4850 0.8402 0.0004 25 1 -0.1734 -1.4775 -1.5230 26 1 -1.3363 -3.5694 -2.0127 27 1 -1.6269 -5.9639 -1.2099 28 1 2.1635 -6.4546 -1.3374 29 1 0.9987 -11.1657 -2.4939 30 1 -1.6664 -10.7190 -0.9018 31 1 -1.2062 -12.2375 -1.8418 32 1 0.8343 -12.5340 -0.3645 33 1 0.3747 -11.0156 0.5758 34 1 -1.5148 -8.6570 -1.3448 35 1 1.4958 -5.7271 0.3783 36 1 2.6734 -3.6468 0.8817 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175959249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:01 Heat of formation + Delta-G solvation = 120.572173 kcal Electronic energy + Delta-G solvation = -19002.295048 eV Core-core repulsion = 16067.276868 eV Total energy + Delta-G solvation = -2935.018180 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.13943 -39.73399 -38.07077 -36.51786 -34.71625 -31.89472 -31.53034 -30.89907 -29.22843 -26.29134 -24.58159 -23.48682 -22.72815 -22.62031 -21.26892 -21.01753 -19.18443 -18.51266 -17.47329 -17.09845 -16.69603 -16.29633 -15.92662 -15.39117 -15.17134 -14.83672 -14.47700 -13.95342 -13.84040 -13.68205 -13.50135 -13.22218 -12.77513 -12.62084 -12.45553 -12.31595 -12.10462 -12.03615 -11.70110 -11.54078 -11.36554 -11.14222 -10.83047 -10.19878 -9.44556 -9.27492 -8.54430 -7.89055 -6.12218 0.83308 1.02690 1.15820 1.41021 1.50191 1.51929 1.54185 2.03416 2.26204 2.61605 2.82252 2.93492 3.61947 3.76877 3.80728 3.95401 4.01252 4.13417 4.45933 4.47766 4.63478 4.72361 4.73186 4.84735 4.97552 5.00951 5.14205 5.17859 5.27301 5.34121 5.47704 5.73099 5.77399 5.96884 6.14538 6.22294 6.37677 6.64152 6.72245 6.85194 7.02488 7.09396 7.26773 8.44185 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.057815 B = 0.003372 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.189519 B = 8301.783818 C = 8585.240080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.033 3.967 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.502 4.502 8 H 0.071 0.929 9 C 0.060 3.940 10 C -0.153 4.153 11 C -0.138 4.138 12 C 0.071 3.929 13 N -0.661 5.661 14 C 0.041 3.959 15 C 0.001 3.999 16 N -0.303 5.303 17 N -0.346 5.346 18 C 0.060 3.940 19 C -0.143 4.143 20 C -0.178 4.178 21 C -0.016 4.016 22 C -0.129 4.129 23 C -0.210 4.210 24 H 0.285 0.715 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.408 0.592 28 H 0.173 0.827 29 H 0.144 0.856 30 H 0.107 0.893 31 H 0.142 0.858 32 H 0.130 0.870 33 H 0.083 0.917 34 H 0.203 0.797 35 H 0.107 0.893 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.511 -17.775 -2.959 18.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.187 1.187 7 C -0.533 4.533 8 H 0.089 0.911 9 C 0.057 3.943 10 C -0.174 4.174 11 C -0.159 4.159 12 C -0.025 4.025 13 N -0.289 5.289 14 C -0.066 4.066 15 C -0.186 4.186 16 N -0.126 5.126 17 N -0.132 5.132 18 C -0.043 4.043 19 C -0.181 4.181 20 C -0.216 4.216 21 C -0.163 4.163 22 C -0.150 4.150 23 C -0.230 4.230 24 H 0.095 0.905 25 H 0.122 0.878 26 H 0.130 0.870 27 H 0.244 0.756 28 H 0.190 0.810 29 H 0.162 0.838 30 H 0.125 0.875 31 H 0.160 0.840 32 H 0.148 0.852 33 H 0.102 0.898 34 H 0.220 0.780 35 H 0.125 0.875 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.667 -18.561 -3.080 19.168 hybrid contribution -0.475 1.800 0.261 1.880 sum -4.142 -16.761 -2.819 17.493 Atomic orbital electron populations 1.69890 1.08661 1.30111 1.37790 1.26645 0.95585 1.04163 0.91616 0.85289 0.78706 0.76053 0.79829 1.18668 1.19314 1.18688 1.19650 0.96739 0.92152 1.44747 0.91080 1.17894 0.92809 0.92909 0.90652 1.20890 0.98884 0.96694 1.00886 1.20486 1.01496 0.92164 1.01783 1.17162 0.97711 0.85503 1.02167 1.40542 1.07202 1.02085 1.79078 1.17926 0.91321 0.87338 1.10013 1.23828 0.95507 0.94498 1.04799 1.77133 1.07483 1.03790 1.24175 1.47782 1.02537 1.05831 1.57077 1.22017 1.06318 0.74076 1.01840 1.23543 0.90181 1.02718 1.01685 1.23512 1.02174 1.01923 0.94003 1.22006 0.95688 0.87408 1.11242 1.20382 0.98156 0.97080 0.99405 1.20806 1.03421 0.93161 1.05644 0.90485 0.87812 0.86958 0.75561 0.80999 0.83837 0.87485 0.83994 0.85213 0.89812 0.78035 0.87493 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.66 10.92 21.81 0.24 -44.43 16 2 C 0.03 1.69 5.20 85.21 0.44 2.13 16 3 Si 0.98 39.40 29.58 68.60 2.03 41.43 16 4 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 5 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 7 C -0.50 -27.78 9.03 23.35 0.21 -27.57 16 8 H 0.07 3.81 7.88 -2.91 -0.02 3.78 16 9 C 0.06 3.30 5.55 -21.27 -0.12 3.18 16 10 C -0.15 -8.11 8.60 22.47 0.19 -7.91 16 11 C -0.14 -6.34 9.90 22.16 0.22 -6.12 16 12 C 0.07 3.04 6.24 38.74 0.24 3.28 16 13 N -0.66 -22.89 5.51 -180.77 -1.00 -23.88 16 14 C 0.04 1.36 6.61 37.70 0.25 1.61 16 15 C 0.00 0.02 9.89 85.35 0.84 0.86 16 16 N -0.30 -10.35 12.56 -56.74 -0.71 -11.06 16 17 N -0.35 -9.26 3.96 -326.31 -1.29 -10.56 16 18 C 0.06 1.04 7.14 44.99 0.32 1.37 16 19 C -0.14 -1.44 9.99 30.59 0.31 -1.13 16 20 C -0.18 -2.41 10.46 30.59 0.32 -2.09 16 21 C -0.02 -0.42 10.88 83.52 0.91 0.49 16 22 C -0.13 -5.84 7.76 22.15 0.17 -5.67 16 23 C -0.21 -10.58 9.74 22.47 0.22 -10.36 16 24 H 0.28 13.82 8.30 -92.70 -0.77 13.05 16 25 H 0.10 5.74 6.24 -2.91 -0.02 5.72 16 26 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 27 H 0.41 11.82 8.94 -92.71 -0.83 10.99 16 28 H 0.17 6.61 6.37 -2.91 -0.02 6.59 16 29 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.11 1.06 7.02 -2.39 -0.02 1.04 16 31 H 0.14 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.20 3.56 7.26 -2.91 -0.02 3.54 16 35 H 0.11 4.52 6.22 -2.91 -0.02 4.50 16 36 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -65.47 307.77 4.08 -61.39 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: 0.28 Total: 35.06 kcal Atomic # 6 Polarization: -52.48 SS G_CDS: 4.53 Total: -47.95 kcal Atomic # 7 Polarization: -87.16 SS G_CDS: -2.76 Total: -89.93 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -65.47 4.08 -61.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175959249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.963 kcal (2) G-P(sol) polarization free energy of solvation -65.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds