Wall clock time and date at job start Mon Mar 30 2020 01:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38681 * 120.41722 * 2 1 4 4 C 1.38620 * 118.41983 * 180.02562 * 3 2 1 5 5 C 1.38232 * 119.16040 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.61586 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.46992 * 94.99698 * 6 5 4 8 8 C 1.38829 * 119.99919 * 179.97438 * 7 6 5 9 9 C 1.39795 * 119.58136 * 359.72864 * 8 7 6 10 10 C 1.38598 * 119.48336 * 179.78519 * 9 8 7 11 11 C 1.38383 * 118.68374 * 0.48325 * 10 9 8 12 12 C 1.40554 * 119.15068 * 359.74232 * 11 10 9 13 13 C 1.41308 * 119.78275 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00880 * 0.02562 * 13 12 11 15 15 C 1.40029 * 119.99986 * 180.02562 * 13 12 11 16 16 N 1.30745 * 119.99805 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00236 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46866 * 60.00292 * 17 15 13 19 19 H 1.48504 * 109.46830 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47273 * 300.00284 * 17 15 13 21 21 N 1.31956 * 119.58508 * 180.02562 * 8 7 6 22 22 N 1.31853 * 120.76636 * 0.25207 * 5 4 3 23 23 C 1.31891 * 121.71890 * 359.48041 * 22 5 4 24 24 H 1.09003 * 109.47757 * 89.99682 * 1 2 3 25 25 H 1.09000 * 109.47184 * 209.99956 * 1 2 3 26 26 H 1.09002 * 109.47216 * 330.00157 * 1 2 3 27 27 H 1.07998 * 120.78501 * 0.02562 * 3 2 1 28 28 H 1.07996 * 120.42163 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47060 * 214.99910 * 6 5 4 30 30 H 1.09001 * 109.47380 * 334.99998 * 6 5 4 31 31 H 0.97000 * 120.00420 * 0.02562 * 7 6 5 32 32 H 1.07991 * 120.25802 * 0.02562 * 9 8 7 33 33 H 1.08007 * 120.65569 * 180.22857 * 10 9 8 34 34 H 1.08007 * 120.42211 * 179.76606 * 11 10 9 35 35 H 0.96999 * 120.00333 * 179.97438 * 16 15 13 36 36 H 1.08003 * 119.60922 * 180.27010 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1476 -0.0005 5 6 4.2255 -0.0822 -0.0016 6 6 5.7312 -0.1467 -0.0028 7 7 6.2149 -0.2885 1.3727 8 6 7.5778 -0.3696 1.6243 9 6 8.4805 -0.3209 0.5580 10 6 9.8409 -0.3976 0.8119 11 6 10.2656 -0.5311 2.1222 12 6 9.3086 -0.5791 3.1505 13 6 9.7274 -0.7146 4.4933 14 1 10.7798 -0.7806 4.7268 15 6 8.7779 -0.7634 5.5213 16 7 7.5039 -0.6831 5.2388 17 14 9.3315 -0.9434 7.2964 18 1 10.1986 0.2050 7.6632 19 1 8.1423 -0.9689 8.1855 20 1 10.0934 -2.2084 7.4515 21 7 8.0045 -0.4977 2.8664 22 7 3.5254 -1.1996 -0.0071 23 6 2.2066 -1.1915 -0.0016 24 1 -0.3635 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6889 2.1424 0.0004 28 1 4.1734 2.0593 -0.0001 29 1 6.0577 -1.0031 -0.5929 30 1 6.1337 0.7684 -0.4370 31 1 5.5830 -0.3264 2.1077 32 1 8.1209 -0.2204 -0.4553 33 1 10.5552 -0.3581 0.0027 34 1 11.3189 -0.5972 2.3517 35 1 6.8461 -0.7172 5.9508 36 1 1.6672 -2.1272 -0.0019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179433389.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:25 Heat of formation + Delta-G solvation = 69.524023 kcal Electronic energy + Delta-G solvation = -18981.167615 eV Core-core repulsion = 16043.935821 eV Total energy + Delta-G solvation = -2937.231794 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.34327 -38.17141 -35.41989 -33.68764 -33.02023 -31.97489 -30.37252 -29.38099 -27.55838 -25.30603 -24.80408 -23.47556 -21.71276 -21.22839 -20.28346 -17.34214 -16.89636 -16.61895 -15.72340 -15.15285 -14.88634 -14.66811 -14.38849 -13.98718 -13.59945 -13.27995 -13.20023 -12.98516 -12.69211 -12.65391 -12.41188 -11.87355 -11.84713 -11.41981 -11.12967 -10.96767 -10.59063 -10.40905 -9.91007 -9.83208 -9.47332 -9.39270 -8.89070 -8.84210 -7.86263 -7.45759 -6.47056 -6.27610 -4.42776 0.98673 1.24071 2.93370 3.13312 3.16055 3.28770 3.34798 3.62304 4.02194 4.24181 4.50248 4.66320 4.69456 4.84434 4.89057 4.89827 5.28465 5.32503 5.45212 5.62917 5.72751 5.79503 5.98434 6.07766 6.13331 6.19759 6.23649 6.61585 6.65078 6.90152 6.93791 6.97978 7.29633 7.63972 7.85634 7.96149 8.00625 8.20618 8.40138 8.71984 8.85012 9.16519 10.29706 10.45504 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020884 B = 0.004291 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.396119 B = 6524.462915 C = 7568.536439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.142 4.142 3 C -0.080 4.080 4 C -0.149 4.149 5 C 0.115 3.885 6 C 0.193 3.807 7 N -0.731 5.731 8 C 0.414 3.586 9 C -0.367 4.367 10 C -0.031 4.031 11 C -0.317 4.317 12 C 0.293 3.707 13 C -0.435 4.435 14 H 0.082 0.918 15 C 0.072 3.928 16 N -0.716 5.716 17 Si 0.905 3.095 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.265 1.265 21 N -0.531 5.531 22 N -0.464 5.464 23 C 0.098 3.902 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.133 0.867 28 H 0.137 0.863 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.396 0.604 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.270 0.730 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.676 3.027 -8.150 15.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.144 4.144 3 C -0.106 4.106 4 C -0.169 4.169 5 C -0.022 4.022 6 C 0.067 3.933 7 N -0.369 5.369 8 C 0.174 3.826 9 C -0.393 4.393 10 C -0.056 4.056 11 C -0.340 4.340 12 C 0.166 3.834 13 C -0.467 4.467 14 H 0.101 0.899 15 C -0.153 4.153 16 N -0.338 5.338 17 Si 0.729 3.271 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.190 1.190 21 N -0.253 5.253 22 N -0.172 5.172 23 C -0.060 4.060 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.151 0.849 28 H 0.155 0.845 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.230 0.770 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.988 2.208 -7.585 15.202 hybrid contribution 0.090 0.761 0.322 0.831 sum -12.898 2.969 -7.263 15.097 Atomic orbital electron populations 1.20705 0.90318 1.03115 1.02415 1.20951 0.97518 0.94384 1.01592 1.21471 0.93974 0.98131 0.97022 1.22051 0.95087 0.99259 1.00547 1.21376 0.96659 0.88427 0.95784 1.19846 0.85690 1.01648 0.86119 1.43975 1.04212 1.83310 1.05355 1.18471 0.83521 0.89870 0.90753 1.20598 0.93606 1.28419 0.96694 1.20588 0.94252 0.95197 0.95536 1.21532 0.98681 1.20331 0.93457 1.18181 0.85815 0.86574 0.92809 1.19543 0.94188 1.43185 0.89826 0.89940 1.26049 0.94652 0.93649 1.00997 1.70148 1.01085 1.29176 1.33370 0.86444 0.79015 0.79844 0.81770 1.19028 1.20398 1.19005 1.68189 1.16781 1.24785 1.15521 1.67546 1.08032 1.31155 1.10511 1.22679 0.89771 0.97450 0.96138 0.91023 0.91164 0.91402 0.84897 0.84480 0.91266 0.91490 0.76958 0.89157 0.88915 0.88717 0.91933 0.82900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.04 36.00 0.36 -0.40 16 2 C -0.14 -1.50 5.90 -104.48 -0.62 -2.11 16 3 C -0.08 -0.86 9.86 -39.28 -0.39 -1.24 16 4 C -0.15 -1.89 9.72 -39.44 -0.38 -2.27 16 5 C 0.12 1.75 6.15 -82.58 -0.51 1.25 16 6 C 0.19 3.28 5.19 -5.19 -0.03 3.25 16 7 N -0.73 -15.58 5.71 -61.57 -0.35 -15.93 16 8 C 0.41 10.45 7.65 -155.32 -1.19 9.26 16 9 C -0.37 -8.68 9.34 -38.87 -0.36 -9.04 16 10 C -0.03 -0.74 10.15 -39.40 -0.40 -1.14 16 11 C -0.32 -8.21 9.83 -38.66 -0.38 -8.59 16 12 C 0.29 8.37 6.55 -85.01 -0.56 7.81 16 13 C -0.44 -12.06 9.14 -37.74 -0.34 -12.40 16 14 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 15 C 0.07 1.88 5.50 -17.34 -0.10 1.78 16 16 N -0.72 -19.58 11.46 55.55 0.64 -18.94 16 17 Si 0.90 19.12 29.56 -169.99 -5.02 14.10 16 18 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 19 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 N -0.53 -15.13 7.89 -10.33 -0.08 -15.21 16 22 N -0.46 -7.27 10.27 -9.47 -0.10 -7.36 16 23 C 0.10 1.21 10.86 -17.55 -0.19 1.02 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 26 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 27 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 28 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 29 H 0.07 1.21 7.91 -51.93 -0.41 0.80 16 30 H 0.07 1.04 7.83 -51.93 -0.41 0.63 16 31 H 0.40 8.73 8.58 -40.82 -0.35 8.38 16 32 H 0.09 1.88 6.68 -52.49 -0.35 1.53 16 33 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 34 H 0.09 2.27 8.06 -52.48 -0.42 1.85 16 35 H 0.27 6.73 8.29 -40.82 -0.34 6.39 16 36 H 0.15 1.51 8.06 -52.48 -0.42 1.08 16 LS Contribution 313.84 15.07 4.73 4.73 Total: -1.00 -31.73 313.84 -9.71 -41.44 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -4.44 Total: 10.00 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -5.08 Total: -12.82 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.11 Total: -57.45 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.73 -9.71 -41.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179433389.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.962 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds