Wall clock time and date at job start Mon Mar 30 2020 01:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38681 * 120.41722 * 2 1 4 4 C 1.38620 * 118.41983 * 180.02562 * 3 2 1 5 5 C 1.38232 * 119.16040 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.61586 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.46992 * 94.99698 * 6 5 4 8 8 C 1.38829 * 119.99919 * 179.97438 * 7 6 5 9 9 C 1.39795 * 119.58136 * 359.72864 * 8 7 6 10 10 C 1.38598 * 119.48336 * 179.78519 * 9 8 7 11 11 C 1.38383 * 118.68374 * 0.48325 * 10 9 8 12 12 C 1.40554 * 119.15068 * 359.74232 * 11 10 9 13 13 C 1.41308 * 119.78275 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00880 * 0.02562 * 13 12 11 15 15 C 1.40029 * 119.99986 * 180.02562 * 13 12 11 16 16 N 1.30745 * 119.99805 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00236 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46866 * 60.00292 * 17 15 13 19 19 H 1.48504 * 109.46830 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47273 * 300.00284 * 17 15 13 21 21 N 1.31956 * 119.58508 * 180.02562 * 8 7 6 22 22 N 1.31853 * 120.76636 * 0.25207 * 5 4 3 23 23 C 1.31891 * 121.71890 * 359.48041 * 22 5 4 24 24 H 1.09003 * 109.47757 * 89.99682 * 1 2 3 25 25 H 1.09000 * 109.47184 * 209.99956 * 1 2 3 26 26 H 1.09002 * 109.47216 * 330.00157 * 1 2 3 27 27 H 1.07998 * 120.78501 * 0.02562 * 3 2 1 28 28 H 1.07996 * 120.42163 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47060 * 214.99910 * 6 5 4 30 30 H 1.09001 * 109.47380 * 334.99998 * 6 5 4 31 31 H 0.97000 * 120.00420 * 0.02562 * 7 6 5 32 32 H 1.07991 * 120.25802 * 0.02562 * 9 8 7 33 33 H 1.08007 * 120.65569 * 180.22857 * 10 9 8 34 34 H 1.08007 * 120.42211 * 179.76606 * 11 10 9 35 35 H 0.96999 * 120.00333 * 179.97438 * 16 15 13 36 36 H 1.08003 * 119.60922 * 180.27010 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1476 -0.0005 5 6 4.2255 -0.0822 -0.0016 6 6 5.7312 -0.1467 -0.0028 7 7 6.2149 -0.2885 1.3727 8 6 7.5778 -0.3696 1.6243 9 6 8.4805 -0.3209 0.5580 10 6 9.8409 -0.3976 0.8119 11 6 10.2656 -0.5311 2.1222 12 6 9.3086 -0.5791 3.1505 13 6 9.7274 -0.7146 4.4933 14 1 10.7798 -0.7806 4.7268 15 6 8.7779 -0.7634 5.5213 16 7 7.5039 -0.6831 5.2388 17 14 9.3315 -0.9434 7.2964 18 1 10.1986 0.2050 7.6632 19 1 8.1423 -0.9689 8.1855 20 1 10.0934 -2.2084 7.4515 21 7 8.0045 -0.4977 2.8664 22 7 3.5254 -1.1996 -0.0071 23 6 2.2066 -1.1915 -0.0016 24 1 -0.3635 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6889 2.1424 0.0004 28 1 4.1734 2.0593 -0.0001 29 1 6.0577 -1.0031 -0.5929 30 1 6.1337 0.7684 -0.4370 31 1 5.5830 -0.3264 2.1077 32 1 8.1209 -0.2204 -0.4553 33 1 10.5552 -0.3581 0.0027 34 1 11.3189 -0.5972 2.3517 35 1 6.8461 -0.7172 5.9508 36 1 1.6672 -2.1272 -0.0019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179433389.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:25 Heat of formation + Delta-G solvation = 50.355797 kcal Electronic energy + Delta-G solvation = -18981.998811 eV Core-core repulsion = 16043.935821 eV Total energy + Delta-G solvation = -2938.062991 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.33330 -40.06225 -36.95730 -35.29742 -34.35166 -33.06765 -32.26347 -31.00826 -28.82388 -27.25420 -25.95606 -24.43619 -23.41287 -22.60718 -22.00276 -19.28209 -18.37619 -17.67188 -17.15559 -16.54286 -16.38542 -16.03727 -15.94415 -15.32629 -15.04032 -14.78003 -14.68752 -14.12012 -13.89841 -13.64268 -13.54157 -13.37224 -13.19240 -12.81822 -12.73266 -12.60975 -12.37596 -12.21560 -11.76384 -11.30301 -10.76480 -10.69405 -10.40662 -9.84436 -9.82162 -9.44562 -8.32440 -8.22393 -6.48071 0.01888 0.32408 1.07026 1.34840 1.40951 1.53443 1.59633 2.25209 2.45969 2.92869 3.03019 3.25707 3.71883 3.91433 4.00673 4.05657 4.07715 4.33259 4.39532 4.53772 4.65703 4.71305 4.80115 4.84040 4.89600 4.98403 5.01097 5.10414 5.15543 5.19722 5.33050 5.35624 5.71201 5.76075 5.96640 6.06000 6.21662 6.52907 6.80461 6.90813 7.01399 7.19419 8.34042 8.51568 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020884 B = 0.004291 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.396119 B = 6524.462915 C = 7568.536439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.131 4.131 3 C -0.081 4.081 4 C -0.151 4.151 5 C 0.088 3.912 6 C 0.196 3.804 7 N -0.727 5.727 8 C 0.395 3.605 9 C -0.366 4.366 10 C -0.028 4.028 11 C -0.343 4.343 12 C 0.259 3.741 13 C -0.472 4.472 14 H 0.088 0.912 15 C 0.025 3.975 16 N -0.755 5.755 17 Si 0.987 3.013 18 H -0.258 1.258 19 H -0.270 1.270 20 H -0.259 1.259 21 N -0.567 5.567 22 N -0.501 5.501 23 C 0.080 3.920 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.167 0.833 28 H 0.149 0.851 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.388 0.612 32 H 0.119 0.881 33 H 0.132 0.868 34 H 0.104 0.896 35 H 0.275 0.725 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.138 3.794 -8.546 16.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.133 4.133 3 C -0.106 4.106 4 C -0.172 4.172 5 C -0.049 4.049 6 C 0.071 3.929 7 N -0.362 5.362 8 C 0.155 3.845 9 C -0.392 4.392 10 C -0.053 4.053 11 C -0.366 4.366 12 C 0.132 3.868 13 C -0.504 4.504 14 H 0.106 0.894 15 C -0.196 4.196 16 N -0.377 5.377 17 Si 0.807 3.193 18 H -0.182 1.182 19 H -0.194 1.194 20 H -0.184 1.184 21 N -0.290 5.290 22 N -0.210 5.210 23 C -0.078 4.078 24 H 0.106 0.894 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.184 0.816 28 H 0.167 0.833 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.222 0.778 32 H 0.137 0.863 33 H 0.150 0.850 34 H 0.123 0.877 35 H 0.085 0.915 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -14.467 2.983 -8.033 16.814 hybrid contribution 0.403 0.528 0.283 0.722 sum -14.064 3.511 -7.750 16.437 Atomic orbital electron populations 1.20797 0.87453 1.04301 1.03775 1.21367 0.99482 0.93527 0.98926 1.21894 0.93223 0.99722 0.95781 1.22214 0.96340 0.98612 0.99991 1.21118 0.95524 0.89560 0.98739 1.19944 0.87636 1.01784 0.83526 1.44157 1.02688 1.82312 1.07017 1.18927 0.85350 0.89647 0.90599 1.20951 0.93579 1.27021 0.97641 1.21018 0.95092 0.93376 0.95769 1.21712 0.98878 1.21803 0.94179 1.18683 0.86667 0.87372 0.94117 1.19931 0.95000 1.44845 0.90655 0.89372 1.26994 0.94390 0.92570 1.05661 1.70265 1.02369 1.29948 1.35112 0.85205 0.78745 0.80019 0.75311 1.18195 1.19407 1.18368 1.68158 1.17202 1.26249 1.17350 1.67426 1.09828 1.31973 1.11784 1.23114 0.88973 0.99333 0.96373 0.89372 0.90273 0.89989 0.81577 0.83317 0.92217 0.89941 0.77841 0.86274 0.85030 0.87749 0.91463 0.81037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.04 71.24 0.72 -0.41 16 2 C -0.13 -2.44 5.90 -19.78 -0.12 -2.55 16 3 C -0.08 -1.52 9.86 22.47 0.22 -1.30 16 4 C -0.15 -3.64 9.72 22.36 0.22 -3.42 16 5 C 0.09 2.66 6.15 42.55 0.26 2.92 16 6 C 0.20 6.69 5.19 85.63 0.44 7.13 16 7 N -0.73 -31.72 5.71 -348.71 -1.99 -33.71 16 8 C 0.40 20.39 7.65 133.42 1.02 21.41 16 9 C -0.37 -17.14 9.34 22.73 0.21 -16.93 16 10 C -0.03 -1.32 10.15 22.39 0.23 -1.10 16 11 C -0.34 -18.03 9.83 22.87 0.22 -17.80 16 12 C 0.26 15.28 6.55 40.18 0.26 15.54 16 13 C -0.47 -27.01 9.14 23.46 0.21 -26.80 16 14 H 0.09 4.70 7.85 -2.91 -0.02 4.67 16 15 C 0.03 1.35 5.50 85.29 0.47 1.82 16 16 N -0.75 -42.55 11.46 21.84 0.25 -42.30 16 17 Si 0.99 39.74 29.56 68.60 2.03 41.76 16 18 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 19 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 20 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 21 N -0.57 -33.45 7.89 -186.60 -1.47 -34.92 16 22 N -0.50 -15.74 10.27 -183.88 -1.89 -17.63 16 23 C 0.08 1.90 10.86 84.67 0.92 2.82 16 24 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 26 H 0.08 0.68 8.10 -2.39 -0.02 0.66 16 27 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 28 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 29 H 0.06 2.12 7.91 -2.39 -0.02 2.10 16 30 H 0.08 2.51 7.83 -2.39 -0.02 2.50 16 31 H 0.39 17.83 8.58 -92.71 -0.80 17.03 16 32 H 0.12 4.78 6.68 -2.92 -0.02 4.76 16 33 H 0.13 4.99 8.06 -2.91 -0.02 4.97 16 34 H 0.10 5.09 8.06 -2.91 -0.02 5.07 16 35 H 0.27 14.08 8.29 -92.71 -0.77 13.31 16 36 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -71.55 313.84 2.52 -69.03 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: 0.30 Total: 36.42 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 5.29 Total: -18.65 kcal Atomic # 7 Polarization: -123.46 SS G_CDS: -5.10 Total: -128.56 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.76 kcal Total: -71.55 2.52 -69.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179433389.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.382 kcal (2) G-P(sol) polarization free energy of solvation -71.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds