Wall clock time and date at job start Mon Mar 30 2020 01:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30815 * 126.05003 * 2 1 4 4 N 1.28438 * 111.02874 * 179.78548 * 3 2 1 5 5 C 1.46496 * 125.18830 * 180.26097 * 4 3 2 6 6 C 1.36909 * 109.62478 * 0.40298 * 4 3 2 7 7 C 1.46896 * 126.92606 * 179.87371 * 6 4 3 8 8 O 1.21658 * 119.99620 * 99.17382 * 7 6 4 9 9 N 1.34770 * 120.00303 * 279.17741 * 7 6 4 10 10 C 1.46498 * 120.00244 * 174.85425 * 9 7 6 11 11 C 1.52996 * 109.47090 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46951 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47148 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00336 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00113 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00209 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99994 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47154 * 89.99964 * 17 15 13 19 19 H 1.48505 * 109.46905 * 209.99846 * 17 15 13 20 20 H 1.48502 * 109.47116 * 329.99731 * 17 15 13 21 21 C 1.38672 * 106.15212 * 359.61060 * 6 4 3 22 22 F 1.35098 * 127.35573 * 180.24824 * 21 6 4 23 23 H 1.09001 * 109.47101 * 269.96420 * 1 2 3 24 24 H 1.09006 * 109.46921 * 29.95788 * 1 2 3 25 25 H 1.08991 * 109.47363 * 149.95634 * 1 2 3 26 26 H 1.09004 * 109.47169 * 275.04197 * 5 4 3 27 27 H 1.09004 * 109.46910 * 35.04065 * 5 4 3 28 28 H 1.08996 * 109.47015 * 155.04145 * 5 4 3 29 29 H 0.97004 * 119.99391 * 354.85349 * 9 7 6 30 30 H 1.08991 * 109.47133 * 300.00569 * 10 9 7 31 31 H 1.09002 * 109.46589 * 60.00335 * 10 9 7 32 32 H 1.09000 * 109.47478 * 299.99994 * 11 10 9 33 33 H 1.08997 * 109.47237 * 60.00502 * 11 10 9 34 34 H 1.09004 * 109.47286 * 300.00134 * 12 11 10 35 35 H 1.09000 * 109.47468 * 60.00046 * 12 11 10 36 36 H 0.96997 * 119.99925 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2769 1.0576 0.0000 4 7 3.5173 0.7248 0.0045 5 6 4.6430 1.6623 0.0113 6 6 3.6273 -0.6399 -0.0012 7 6 4.8686 -1.4253 -0.0014 8 8 5.2900 -1.8970 1.0378 9 7 5.5407 -1.6232 -1.1527 10 6 6.8352 -2.3089 -1.1366 11 6 7.3802 -2.4030 -2.5631 12 6 8.7318 -3.1197 -2.5464 13 6 9.2690 -3.2118 -3.9514 14 1 8.7028 -2.8007 -4.7741 15 6 10.4828 -3.8219 -4.1868 16 7 11.1717 -4.3239 -3.1852 17 14 11.1490 -3.9354 -5.9283 18 1 11.9756 -2.7371 -6.2212 19 1 11.9835 -5.1567 -6.0604 20 1 10.0175 -4.0028 -6.8877 21 6 2.3306 -1.1313 -0.0007 22 9 1.9446 -2.4260 -0.0006 23 1 -0.3633 -0.0006 1.0277 24 1 -0.3633 0.8904 -0.5132 25 1 -0.3633 -0.8895 -0.5145 26 1 4.8687 1.9665 -1.0108 27 1 4.3812 2.5401 0.6022 28 1 5.5166 1.1780 0.4475 29 1 5.1672 -1.3116 -1.9920 30 1 7.5350 -1.7495 -0.5160 31 1 6.7098 -3.3121 -0.7291 32 1 6.6802 -2.9628 -3.1834 33 1 7.5055 -1.4001 -2.9711 34 1 9.4321 -2.5603 -1.9260 35 1 8.6063 -4.1227 -2.1386 36 1 12.0258 -4.7528 -3.3508 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185404812.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:51 Heat of formation + Delta-G solvation = -20.150879 kcal Electronic energy + Delta-G solvation = -19818.681222 eV Core-core repulsion = 16446.791607 eV Total energy + Delta-G solvation = -3371.889614 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.128 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.84747 -42.82660 -39.45362 -35.60136 -34.39582 -33.43036 -31.67701 -30.71017 -30.05050 -26.98528 -25.80205 -24.05869 -22.46782 -21.40357 -20.82790 -19.81839 -18.08675 -17.17088 -16.96823 -16.42145 -16.15492 -15.68720 -15.17691 -15.14945 -14.51467 -14.22986 -14.07979 -13.80053 -13.70110 -13.33697 -12.83753 -12.70559 -12.60910 -12.35499 -11.94655 -11.86236 -10.97411 -10.93987 -10.84655 -10.67942 -10.35504 -9.96353 -9.52601 -9.41552 -9.18872 -9.04584 -8.94456 -8.42272 -6.06835 -4.10303 1.16549 1.74549 2.06477 2.46049 3.07901 3.27471 3.34317 3.37058 3.80835 4.23223 4.39868 4.46157 4.69275 4.72740 4.84815 4.98336 5.02924 5.29148 5.33310 5.46811 5.55056 5.60951 5.63390 6.01967 6.20859 6.22284 6.28124 6.47440 6.66962 6.88943 7.37414 7.56779 7.57435 7.68263 7.91049 7.99058 8.31917 8.96209 9.54351 11.04412 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.033017 B = 0.003193 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.842791 B = 8766.939549 C = 8833.336378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.017 3.983 3 N -0.261 5.261 4 N -0.261 5.261 5 C 0.088 3.912 6 C -0.045 4.045 7 C 0.585 3.415 8 O -0.516 6.516 9 N -0.708 5.708 10 C 0.114 3.886 11 C -0.121 4.121 12 C 0.024 3.976 13 C -0.524 4.524 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.022 3.978 22 F -0.105 7.105 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.402 0.598 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.019 0.981 35 H 0.020 0.980 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.218 11.898 5.394 22.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.142 4.142 3 N -0.093 5.093 4 N -0.050 5.050 5 C -0.052 4.052 6 C -0.175 4.175 7 C 0.366 3.634 8 O -0.390 6.390 9 N -0.359 5.359 10 C -0.008 4.008 11 C -0.159 4.159 12 C -0.013 4.013 13 C -0.562 4.562 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.008 4.008 22 F -0.084 7.084 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.112 0.888 27 H 0.122 0.878 28 H 0.117 0.883 29 H 0.237 0.763 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.587 12.681 6.198 22.551 hybrid contribution 0.364 -1.066 -1.331 1.744 sum -17.224 11.615 4.867 21.337 Atomic orbital electron populations 1.20122 0.85376 1.03722 1.03316 1.22113 0.97745 0.87108 1.07219 1.73100 0.89187 1.26541 1.20494 1.45229 1.05394 1.03346 1.50998 1.22328 0.84913 0.92676 1.05280 1.21344 0.95669 0.85775 1.14708 1.16811 0.81391 0.80439 0.84736 1.90884 1.66699 1.49427 1.31945 1.46235 1.22230 1.58842 1.08567 1.21818 0.81395 0.97170 1.00397 1.21912 1.00551 1.01327 0.92122 1.19030 0.89305 0.95524 0.97475 1.21185 1.04323 1.37602 0.93116 0.92622 1.25027 0.96954 0.95380 0.97055 1.69960 1.14124 1.38405 1.30735 0.86577 0.78982 0.77567 0.84769 1.20646 1.21162 1.19859 1.17470 0.90345 0.80296 1.12724 1.91502 1.90653 1.31632 1.94620 0.90345 0.90276 0.90228 0.88799 0.87839 0.88294 0.76317 0.91254 0.91082 0.92485 0.92607 0.96236 0.96149 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.45 36.01 0.38 -0.14 16 2 C 0.02 0.20 7.23 -82.39 -0.60 -0.40 16 3 N -0.26 -3.07 11.89 33.68 0.40 -2.67 16 4 N -0.26 -2.96 3.76 -63.82 -0.24 -3.20 16 5 C 0.09 0.64 11.22 59.84 0.67 1.31 16 6 C -0.05 -0.61 6.72 -81.94 -0.55 -1.16 16 7 C 0.59 8.96 7.00 -12.76 -0.09 8.87 16 8 O -0.52 -9.81 17.12 5.23 0.09 -9.73 16 9 N -0.71 -9.86 5.55 -61.56 -0.34 -10.21 16 10 C 0.11 1.88 5.68 -4.04 -0.02 1.86 16 11 C -0.12 -2.25 5.27 -26.73 -0.14 -2.39 16 12 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 13 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 14 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 17 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 C 0.02 0.30 8.16 -38.79 -0.32 -0.02 16 22 F -0.11 -1.51 17.32 2.25 0.04 -1.47 16 23 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.10 0.74 7.66 -51.93 -0.40 0.34 16 29 H 0.40 4.66 8.46 -40.82 -0.35 4.32 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 LS Contribution 322.77 15.07 4.86 4.86 Total: -1.00 -33.26 322.77 -5.62 -38.89 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.93 Total: -2.25 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -1.22 Total: -4.70 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.56 Total: -41.73 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.26 -5.62 -38.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185404812.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.735 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds