Wall clock time and date at job start Mon Mar 30 2020 01:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30815 * 126.05003 * 2 1 4 4 N 1.28438 * 111.02874 * 179.78548 * 3 2 1 5 5 C 1.46496 * 125.18830 * 180.26097 * 4 3 2 6 6 C 1.36909 * 109.62478 * 0.40298 * 4 3 2 7 7 C 1.46896 * 126.92606 * 179.87371 * 6 4 3 8 8 O 1.21658 * 119.99620 * 99.17382 * 7 6 4 9 9 N 1.34770 * 120.00303 * 279.17741 * 7 6 4 10 10 C 1.46498 * 120.00244 * 174.85425 * 9 7 6 11 11 C 1.52996 * 109.47090 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46951 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47148 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00336 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00113 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00209 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99994 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47154 * 89.99964 * 17 15 13 19 19 H 1.48505 * 109.46905 * 209.99846 * 17 15 13 20 20 H 1.48502 * 109.47116 * 329.99731 * 17 15 13 21 21 C 1.38672 * 106.15212 * 359.61060 * 6 4 3 22 22 F 1.35098 * 127.35573 * 180.24824 * 21 6 4 23 23 H 1.09001 * 109.47101 * 269.96420 * 1 2 3 24 24 H 1.09006 * 109.46921 * 29.95788 * 1 2 3 25 25 H 1.08991 * 109.47363 * 149.95634 * 1 2 3 26 26 H 1.09004 * 109.47169 * 275.04197 * 5 4 3 27 27 H 1.09004 * 109.46910 * 35.04065 * 5 4 3 28 28 H 1.08996 * 109.47015 * 155.04145 * 5 4 3 29 29 H 0.97004 * 119.99391 * 354.85349 * 9 7 6 30 30 H 1.08991 * 109.47133 * 300.00569 * 10 9 7 31 31 H 1.09002 * 109.46589 * 60.00335 * 10 9 7 32 32 H 1.09000 * 109.47478 * 299.99994 * 11 10 9 33 33 H 1.08997 * 109.47237 * 60.00502 * 11 10 9 34 34 H 1.09004 * 109.47286 * 300.00134 * 12 11 10 35 35 H 1.09000 * 109.47468 * 60.00046 * 12 11 10 36 36 H 0.96997 * 119.99925 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2769 1.0576 0.0000 4 7 3.5173 0.7248 0.0045 5 6 4.6430 1.6623 0.0113 6 6 3.6273 -0.6399 -0.0012 7 6 4.8686 -1.4253 -0.0014 8 8 5.2900 -1.8970 1.0378 9 7 5.5407 -1.6232 -1.1527 10 6 6.8352 -2.3089 -1.1366 11 6 7.3802 -2.4030 -2.5631 12 6 8.7318 -3.1197 -2.5464 13 6 9.2690 -3.2118 -3.9514 14 1 8.7028 -2.8007 -4.7741 15 6 10.4828 -3.8219 -4.1868 16 7 11.1717 -4.3239 -3.1852 17 14 11.1490 -3.9354 -5.9283 18 1 11.9756 -2.7371 -6.2212 19 1 11.9835 -5.1567 -6.0604 20 1 10.0175 -4.0028 -6.8877 21 6 2.3306 -1.1313 -0.0007 22 9 1.9446 -2.4260 -0.0006 23 1 -0.3633 -0.0006 1.0277 24 1 -0.3633 0.8904 -0.5132 25 1 -0.3633 -0.8895 -0.5145 26 1 4.8687 1.9665 -1.0108 27 1 4.3812 2.5401 0.6022 28 1 5.5166 1.1780 0.4475 29 1 5.1672 -1.3116 -1.9920 30 1 7.5350 -1.7495 -0.5160 31 1 6.7098 -3.3121 -0.7291 32 1 6.6802 -2.9628 -3.1834 33 1 7.5055 -1.4001 -2.9711 34 1 9.4321 -2.5603 -1.9260 35 1 8.6063 -4.1227 -2.1386 36 1 12.0258 -4.7528 -3.3508 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185404812.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:51 Heat of formation + Delta-G solvation = -42.963689 kcal Electronic energy + Delta-G solvation = -19819.670460 eV Core-core repulsion = 16446.791607 eV Total energy + Delta-G solvation = -3372.878852 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.128 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.89870 -43.74054 -40.73626 -37.10758 -35.33078 -35.12455 -33.27887 -31.91346 -30.71866 -28.71476 -26.57081 -25.58965 -23.86423 -22.43011 -22.33205 -21.01139 -19.13436 -18.55718 -18.18835 -17.83073 -17.19487 -17.04187 -16.48978 -16.45384 -16.10281 -15.50340 -15.28235 -14.91312 -14.31859 -14.30308 -14.01567 -13.80293 -13.70743 -13.57199 -13.31775 -13.19883 -12.76682 -12.58672 -12.41992 -11.88897 -11.80946 -11.70928 -11.36844 -11.17305 -10.55358 -10.38210 -10.32452 -9.85886 -8.19915 -6.31061 0.16490 0.76906 1.17068 1.36715 1.42121 1.43051 1.53934 1.94026 2.41966 2.92651 3.14336 3.28255 3.46282 3.81545 4.07659 4.14665 4.17066 4.18983 4.23914 4.50782 4.52247 4.80028 4.83682 4.85213 4.90658 4.98484 5.14585 5.21570 5.32495 5.49296 5.51299 5.70065 5.84073 6.17107 6.23403 6.67684 6.80590 6.86560 7.38724 8.92074 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.033017 B = 0.003193 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.842791 B = 8766.939549 C = 8833.336378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.017 3.983 3 N -0.262 5.262 4 N -0.253 5.253 5 C 0.076 3.924 6 C -0.059 4.059 7 C 0.593 3.407 8 O -0.558 6.558 9 N -0.692 5.692 10 C 0.127 3.873 11 C -0.102 4.102 12 C 0.024 3.976 13 C -0.541 4.541 14 H 0.066 0.934 15 C -0.002 4.002 16 N -0.935 5.935 17 Si 0.965 3.035 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.261 1.261 21 C 0.001 3.999 22 F -0.115 7.115 23 H 0.090 0.910 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.116 0.884 27 H 0.125 0.875 28 H 0.095 0.905 29 H 0.417 0.583 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.074 0.926 34 H -0.003 1.003 35 H -0.008 1.008 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.486 13.550 3.948 24.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.141 4.141 3 N -0.095 5.095 4 N -0.042 5.042 5 C -0.062 4.062 6 C -0.190 4.190 7 C 0.376 3.624 8 O -0.435 6.435 9 N -0.343 5.343 10 C 0.004 3.996 11 C -0.140 4.140 12 C -0.014 4.014 13 C -0.579 4.579 14 H 0.084 0.916 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.185 1.185 21 C -0.030 4.030 22 F -0.094 7.094 23 H 0.109 0.891 24 H 0.113 0.887 25 H 0.106 0.894 26 H 0.135 0.865 27 H 0.143 0.857 28 H 0.113 0.887 29 H 0.254 0.746 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.015 0.985 35 H 0.010 0.990 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.882 14.370 4.718 24.192 hybrid contribution 0.750 -1.545 -0.845 1.914 sum -18.132 12.825 3.873 22.544 Atomic orbital electron populations 1.20294 0.82862 1.04921 1.04476 1.22643 0.99286 0.86058 1.06077 1.73134 0.89311 1.26459 1.20563 1.45617 1.06089 1.02809 1.49671 1.22709 0.83717 0.92579 1.07207 1.21063 0.94716 0.86926 1.16288 1.16951 0.81553 0.79831 0.84108 1.90864 1.67998 1.51216 1.33426 1.45962 1.21171 1.58034 1.09144 1.21456 0.82482 0.96663 0.98970 1.21614 0.97390 1.01546 0.93480 1.18938 0.92099 0.94415 0.95932 1.21679 1.04606 1.37161 0.94442 0.91575 1.25992 0.97475 0.95050 1.01475 1.70102 1.14648 1.39515 1.33218 0.85448 0.78493 0.77608 0.79499 1.19734 1.21180 1.18537 1.17806 0.90924 0.80469 1.13808 1.91468 1.90766 1.32369 1.94790 0.89121 0.88701 0.89399 0.86528 0.85690 0.88656 0.74554 0.91469 0.92704 0.91632 0.90761 0.98458 0.98964 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.45 71.24 0.74 -0.14 16 2 C 0.02 0.37 7.23 43.12 0.31 0.68 16 3 N -0.26 -5.63 11.89 -47.35 -0.56 -6.19 16 4 N -0.25 -5.31 3.76 -355.83 -1.34 -6.64 16 5 C 0.08 0.95 11.22 127.77 1.43 2.38 16 6 C -0.06 -1.56 6.72 40.72 0.27 -1.29 16 7 C 0.59 17.97 7.00 86.51 0.61 18.57 16 8 O -0.56 -21.56 17.12 -4.22 -0.07 -21.64 16 9 N -0.69 -18.60 5.55 -466.91 -2.59 -21.19 16 10 C 0.13 4.18 5.68 86.38 0.49 4.67 16 11 C -0.10 -3.71 5.27 30.59 0.16 -3.54 16 12 C 0.02 1.19 4.97 29.85 0.15 1.34 16 13 C -0.54 -29.40 9.11 25.60 0.23 -29.16 16 14 H 0.07 3.38 7.74 -2.91 -0.02 3.35 16 15 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 16 N -0.93 -56.13 13.29 21.45 0.28 -55.85 16 17 Si 0.96 43.03 29.54 68.60 2.03 45.06 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 19 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 21 C 0.00 0.02 8.16 22.78 0.19 0.20 16 22 F -0.12 -3.27 17.32 44.97 0.78 -2.49 16 23 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.12 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.09 1.29 7.66 -2.39 -0.02 1.27 16 29 H 0.42 8.86 8.46 -92.71 -0.78 8.08 16 30 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 35 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 36 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -72.12 322.77 3.89 -68.23 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 0.31 Total: 6.66 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 5.05 Total: -5.95 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -4.21 Total: -89.87 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.07 Total: -21.64 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.78 Total: -2.49 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -72.12 3.89 -68.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185404812.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.271 kcal (2) G-P(sol) polarization free energy of solvation -72.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds