Wall clock time and date at job start Mon Mar 30 2020 00:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37098 * 120.00236 * 2 1 4 4 H 1.07993 * 120.00187 * 204.39322 * 3 2 1 5 5 C 1.38950 * 119.99777 * 24.39259 * 3 2 1 6 6 N 1.31410 * 119.99877 * 12.64384 * 5 3 2 7 7 Si 1.86796 * 119.99975 * 192.64212 * 5 3 2 8 8 H 1.48501 * 109.47422 * 89.99883 * 7 5 3 9 9 H 1.48501 * 109.47224 * 209.99901 * 7 5 3 10 10 H 1.48496 * 109.47255 * 329.99991 * 7 5 3 11 11 C 1.34781 * 119.99811 * 180.02562 * 2 1 3 12 12 O 1.21290 * 119.99649 * 179.97438 * 11 2 1 13 13 C 1.50698 * 120.00185 * 0.02562 * 11 2 1 14 14 N 1.46494 * 109.47413 * 179.97438 * 13 11 2 15 15 C 1.34773 * 120.00345 * 179.97438 * 14 13 11 16 16 O 1.21281 * 119.99876 * 0.02562 * 15 14 13 17 17 C 1.50706 * 120.00355 * 179.97438 * 15 14 13 18 18 H 1.08994 * 110.21121 * 39.52687 * 17 15 14 19 19 C 1.54476 * 110.31682 * 277.55091 * 17 15 14 20 20 C 1.54631 * 101.76095 * 215.54328 * 19 17 15 21 21 C 1.51279 * 104.19807 * 24.79794 * 20 19 17 22 22 O 1.21277 * 124.94027 * 163.76638 * 21 20 19 23 23 N 1.34417 * 110.11337 * 343.74990 * 21 20 19 24 24 H 1.08992 * 109.46783 * 265.86565 * 1 2 3 25 25 H 1.09004 * 109.46793 * 25.86591 * 1 2 3 26 26 H 1.09004 * 109.46981 * 145.86048 * 1 2 3 27 27 H 0.97008 * 120.00175 * 180.02562 * 6 5 3 28 28 H 1.09006 * 109.47112 * 59.99598 * 13 11 2 29 29 H 1.09002 * 109.46864 * 300.00550 * 13 11 2 30 30 H 0.97000 * 119.99462 * 0.02562 * 14 13 11 31 31 H 1.09000 * 110.97751 * 333.66235 * 19 17 15 32 32 H 1.09001 * 110.97270 * 97.39221 * 19 17 15 33 33 H 1.08998 * 110.48687 * 143.48217 * 20 19 17 34 34 H 1.09007 * 110.48472 * 266.12185 * 20 19 17 35 35 H 0.97000 * 124.35040 * 179.85941 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1582 1.2290 -0.3862 5 6 1.5488 2.3369 0.4970 6 7 0.4346 2.2491 1.1881 7 14 2.3238 4.0072 0.1827 8 1 1.7870 4.5720 -1.0816 9 1 2.0034 4.9213 1.3084 10 1 3.7968 3.8564 0.0713 11 6 2.1389 -1.1673 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0017 14 7 2.3373 -3.5859 -0.0027 15 6 1.8881 -4.8565 -0.0033 16 8 0.6957 -5.0781 -0.0035 17 6 2.8673 -6.0020 -0.0049 18 1 3.7122 -5.7761 0.6456 19 6 3.3595 -6.2850 -1.4416 20 6 3.5049 -7.8244 -1.4275 21 6 2.5498 -8.2774 -0.3453 22 8 2.1530 -9.4142 -0.2005 23 7 2.2054 -7.2367 0.4325 24 1 -0.3632 -0.0741 1.0249 25 1 -0.3633 0.9248 -0.4484 26 1 -0.3633 -0.8506 -0.5768 27 1 0.0143 3.0517 1.5348 28 1 0.7590 -2.5295 -0.8920 29 1 0.7583 -2.5306 0.8880 30 1 3.2910 -3.4086 -0.0022 31 1 2.6191 -5.9698 -2.1768 32 1 4.3197 -5.8036 -1.6269 33 1 3.2161 -8.2436 -2.3913 34 1 4.5271 -8.1087 -1.1777 35 1 1.6004 -7.2950 1.1885 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187517087.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:31 Heat of formation + Delta-G solvation = -96.490156 kcal Electronic energy + Delta-G solvation = -20235.033685 eV Core-core repulsion = 16847.460962 eV Total energy + Delta-G solvation = -3387.572723 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.90552 -39.31677 -38.35400 -36.30036 -35.08988 -34.04237 -31.82484 -31.55175 -29.33205 -27.22117 -26.08497 -24.23115 -22.77970 -20.79338 -20.45543 -19.47146 -17.95953 -17.42157 -17.00619 -16.21459 -15.94514 -15.46619 -15.30963 -14.82094 -14.58970 -14.23858 -14.02059 -13.81730 -13.50212 -13.36742 -12.95712 -12.62463 -12.26435 -12.06779 -11.65778 -11.46564 -11.44380 -11.39044 -10.96900 -10.45249 -10.43241 -10.19238 -10.05626 -9.27765 -9.15131 -8.97697 -8.69210 -7.84829 -6.46718 -4.04605 2.36444 2.47371 2.88899 3.07172 3.17826 3.22189 3.36935 3.66037 4.02296 4.05801 4.14296 4.49816 4.66844 4.71373 4.83026 4.98226 5.09061 5.35749 5.48313 5.54842 5.61657 5.75438 5.86071 6.21840 6.45389 6.49998 6.72078 6.79925 7.07781 7.43250 7.57525 7.94237 8.02713 8.20825 8.29962 8.99521 9.23246 9.74426 10.57662 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.054383 B = 0.003419 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.746402 B = 8186.609343 C = 8521.486786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.434 5.434 3 C -0.312 4.312 4 H 0.101 0.899 5 C 0.033 3.967 6 N -0.877 5.877 7 Si 0.929 3.071 8 H -0.276 1.276 9 H -0.283 1.283 10 H -0.268 1.268 11 C 0.433 3.567 12 O -0.592 6.592 13 C 0.109 3.891 14 N -0.701 5.701 15 C 0.502 3.498 16 O -0.537 6.537 17 C 0.114 3.886 18 H 0.108 0.892 19 C -0.122 4.122 20 C -0.154 4.154 21 C 0.523 3.477 22 O -0.535 6.535 23 N -0.707 5.707 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.030 0.970 27 H 0.270 0.730 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.412 0.588 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.024 -11.342 -3.711 12.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.151 5.151 3 C -0.440 4.440 4 H 0.118 0.882 5 C -0.171 4.171 6 N -0.515 5.515 7 Si 0.756 3.244 8 H -0.202 1.202 9 H -0.208 1.208 10 H -0.193 1.193 11 C 0.221 3.779 12 O -0.478 6.478 13 C -0.018 4.018 14 N -0.355 5.355 15 C 0.286 3.714 16 O -0.414 6.414 17 C 0.005 3.995 18 H 0.126 0.874 19 C -0.160 4.160 20 C -0.194 4.194 21 C 0.309 3.691 22 O -0.412 6.412 23 N -0.363 5.363 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.251 0.749 31 H 0.108 0.892 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 3.464 -11.900 -3.631 12.915 hybrid contribution 0.190 1.212 0.391 1.287 sum 3.654 -10.688 -3.241 11.751 Atomic orbital electron populations 1.21591 0.80833 1.00394 1.01058 1.43522 1.05699 1.04588 1.61300 1.19677 1.00818 0.83872 1.39592 0.88154 1.25399 0.96541 1.00348 0.94821 1.69991 1.18996 1.29974 1.32542 0.85875 0.79673 0.80924 0.77950 1.20230 1.20849 1.19255 1.19875 0.88108 0.84839 0.85108 1.90491 1.13651 1.86600 1.57032 1.21088 0.91785 0.85702 1.03273 1.45718 1.11897 1.04499 1.73364 1.20559 0.89644 0.83937 0.77287 1.90737 1.16381 1.84687 1.49633 1.21587 0.94768 0.84510 0.98680 0.87397 1.22627 1.03772 0.95568 0.94025 1.22374 1.01003 0.96053 1.00014 1.20831 0.81029 0.84337 0.82869 1.90761 1.57902 1.19663 1.72880 1.45942 1.48736 1.08104 1.33536 0.92551 0.90345 0.95194 0.91974 0.89841 0.89563 0.74941 0.89194 0.87774 0.87563 0.87281 0.74452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.21 8.44 59.85 0.51 2.72 16 2 N -0.43 -10.42 3.01 -122.19 -0.37 -10.79 16 3 C -0.31 -8.22 9.24 -14.93 -0.14 -8.36 16 4 H 0.10 2.75 7.45 -52.49 -0.39 2.36 16 5 C 0.03 0.84 5.04 -17.47 -0.09 0.75 16 6 N -0.88 -22.39 10.83 55.50 0.60 -21.79 16 7 Si 0.93 19.75 29.57 -169.99 -5.03 14.73 16 8 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 9 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 11 C 0.43 9.61 7.70 -10.98 -0.08 9.53 16 12 O -0.59 -14.49 15.38 5.55 0.09 -14.40 16 13 C 0.11 1.90 4.76 -5.20 -0.02 1.87 16 14 N -0.70 -10.23 5.53 -61.47 -0.34 -10.57 16 15 C 0.50 6.80 7.02 -10.98 -0.08 6.72 16 16 O -0.54 -9.21 16.58 5.56 0.09 -9.12 16 17 C 0.11 1.09 3.92 -68.16 -0.27 0.82 16 18 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 19 C -0.12 -0.90 6.68 -25.10 -0.17 -1.07 16 20 C -0.15 -1.17 6.86 -26.74 -0.18 -1.35 16 21 C 0.52 6.20 8.43 -10.86 -0.09 6.11 16 22 O -0.54 -8.52 18.03 5.56 0.10 -8.42 16 23 N -0.71 -7.76 5.47 -53.89 -0.29 -8.05 16 24 H 0.06 1.22 7.83 -51.93 -0.41 0.82 16 25 H 0.08 1.75 6.80 -51.93 -0.35 1.40 16 26 H 0.03 0.52 6.61 -51.93 -0.34 0.18 16 27 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 28 H 0.08 1.39 7.41 -51.93 -0.38 1.01 16 29 H 0.09 1.50 8.11 -51.93 -0.42 1.08 16 30 H 0.41 5.71 7.44 -40.82 -0.30 5.41 16 31 H 0.09 0.75 7.91 -51.93 -0.41 0.34 16 32 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.42 4.62 8.96 -40.82 -0.37 4.25 16 LS Contribution 303.19 15.07 4.57 4.57 Total: -1.00 -33.00 303.19 -5.40 -38.40 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -4.20 Total: 7.72 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: -0.62 Total: 17.74 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.40 Total: -51.20 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: 0.28 Total: -31.95 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.73 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.00 -5.40 -38.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187517087.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.091 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds