Wall clock time and date at job start Mon Mar 30 2020 00:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37098 * 120.00236 * 2 1 4 4 H 1.07993 * 120.00187 * 204.39322 * 3 2 1 5 5 C 1.38950 * 119.99777 * 24.39259 * 3 2 1 6 6 N 1.31410 * 119.99877 * 12.64384 * 5 3 2 7 7 Si 1.86796 * 119.99975 * 192.64212 * 5 3 2 8 8 H 1.48501 * 109.47422 * 89.99883 * 7 5 3 9 9 H 1.48501 * 109.47224 * 209.99901 * 7 5 3 10 10 H 1.48496 * 109.47255 * 329.99991 * 7 5 3 11 11 C 1.34781 * 119.99811 * 180.02562 * 2 1 3 12 12 O 1.21290 * 119.99649 * 179.97438 * 11 2 1 13 13 C 1.50698 * 120.00185 * 0.02562 * 11 2 1 14 14 N 1.46494 * 109.47413 * 179.97438 * 13 11 2 15 15 C 1.34773 * 120.00345 * 179.97438 * 14 13 11 16 16 O 1.21281 * 119.99876 * 0.02562 * 15 14 13 17 17 C 1.50706 * 120.00355 * 179.97438 * 15 14 13 18 18 H 1.08994 * 110.21121 * 39.52687 * 17 15 14 19 19 C 1.54476 * 110.31682 * 277.55091 * 17 15 14 20 20 C 1.54631 * 101.76095 * 215.54328 * 19 17 15 21 21 C 1.51279 * 104.19807 * 24.79794 * 20 19 17 22 22 O 1.21277 * 124.94027 * 163.76638 * 21 20 19 23 23 N 1.34417 * 110.11337 * 343.74990 * 21 20 19 24 24 H 1.08992 * 109.46783 * 265.86565 * 1 2 3 25 25 H 1.09004 * 109.46793 * 25.86591 * 1 2 3 26 26 H 1.09004 * 109.46981 * 145.86048 * 1 2 3 27 27 H 0.97008 * 120.00175 * 180.02562 * 6 5 3 28 28 H 1.09006 * 109.47112 * 59.99598 * 13 11 2 29 29 H 1.09002 * 109.46864 * 300.00550 * 13 11 2 30 30 H 0.97000 * 119.99462 * 0.02562 * 14 13 11 31 31 H 1.09000 * 110.97751 * 333.66235 * 19 17 15 32 32 H 1.09001 * 110.97270 * 97.39221 * 19 17 15 33 33 H 1.08998 * 110.48687 * 143.48217 * 20 19 17 34 34 H 1.09007 * 110.48472 * 266.12185 * 20 19 17 35 35 H 0.97000 * 124.35040 * 179.85941 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1582 1.2290 -0.3862 5 6 1.5488 2.3369 0.4970 6 7 0.4346 2.2491 1.1881 7 14 2.3238 4.0072 0.1827 8 1 1.7870 4.5720 -1.0816 9 1 2.0034 4.9213 1.3084 10 1 3.7968 3.8564 0.0713 11 6 2.1389 -1.1673 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0017 14 7 2.3373 -3.5859 -0.0027 15 6 1.8881 -4.8565 -0.0033 16 8 0.6957 -5.0781 -0.0035 17 6 2.8673 -6.0020 -0.0049 18 1 3.7122 -5.7761 0.6456 19 6 3.3595 -6.2850 -1.4416 20 6 3.5049 -7.8244 -1.4275 21 6 2.5498 -8.2774 -0.3453 22 8 2.1530 -9.4142 -0.2005 23 7 2.2054 -7.2367 0.4325 24 1 -0.3632 -0.0741 1.0249 25 1 -0.3633 0.9248 -0.4484 26 1 -0.3633 -0.8506 -0.5768 27 1 0.0143 3.0517 1.5348 28 1 0.7590 -2.5295 -0.8920 29 1 0.7583 -2.5306 0.8880 30 1 3.2910 -3.4086 -0.0022 31 1 2.6191 -5.9698 -2.1768 32 1 4.3197 -5.8036 -1.6269 33 1 3.2161 -8.2436 -2.3913 34 1 4.5271 -8.1087 -1.1777 35 1 1.6004 -7.2950 1.1885 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187517087.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:30 Heat of formation + Delta-G solvation = -123.406031 kcal Electronic energy + Delta-G solvation = -20236.200845 eV Core-core repulsion = 16847.460962 eV Total energy + Delta-G solvation = -3388.739883 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.85464 -40.69181 -39.82141 -37.28830 -36.83336 -35.43905 -33.71063 -32.27402 -30.49108 -28.63921 -27.67915 -25.95695 -23.60466 -21.69986 -21.45504 -21.08655 -19.18259 -18.84199 -18.31979 -17.58547 -17.20548 -16.82516 -16.68298 -16.20795 -15.98590 -15.71176 -15.40599 -14.80861 -14.69214 -14.21500 -14.06532 -13.93220 -13.56696 -13.38489 -13.23944 -13.15039 -12.88423 -12.64476 -12.35879 -12.13059 -12.07301 -11.26223 -11.02565 -11.00590 -10.51690 -10.26408 -10.18093 -9.72898 -8.36857 -6.02973 1.37507 1.40668 1.43712 1.46673 1.55482 1.86213 1.91983 2.27647 2.45167 3.03030 3.06587 3.31821 3.40434 3.70036 3.88645 4.02479 4.09869 4.32476 4.42676 4.50989 4.63685 4.83546 4.98631 4.99264 5.05416 5.20676 5.34009 5.44081 5.65304 5.92923 6.05644 6.38595 6.46935 7.05346 7.10023 7.15514 7.39716 7.90363 8.66078 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.054383 B = 0.003419 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.746402 B = 8186.609343 C = 8521.486786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.453 5.453 3 C -0.345 4.345 4 H 0.080 0.920 5 C -0.001 4.001 6 N -0.895 5.895 7 Si 0.991 3.009 8 H -0.266 1.266 9 H -0.277 1.277 10 H -0.272 1.272 11 C 0.433 3.567 12 O -0.618 6.618 13 C 0.122 3.878 14 N -0.698 5.698 15 C 0.506 3.494 16 O -0.575 6.575 17 C 0.119 3.881 18 H 0.143 0.857 19 C -0.115 4.115 20 C -0.142 4.142 21 C 0.513 3.487 22 O -0.586 6.586 23 N -0.710 5.710 24 H 0.045 0.955 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.274 0.726 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.419 0.581 31 H 0.080 0.920 32 H 0.139 0.861 33 H 0.116 0.884 34 H 0.139 0.861 35 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.099 -11.417 -4.396 13.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.171 5.171 3 C -0.473 4.473 4 H 0.098 0.902 5 C -0.204 4.204 6 N -0.533 5.533 7 Si 0.815 3.185 8 H -0.191 1.191 9 H -0.202 1.202 10 H -0.196 1.196 11 C 0.222 3.778 12 O -0.505 6.505 13 C -0.005 4.005 14 N -0.352 5.352 15 C 0.292 3.708 16 O -0.455 6.455 17 C 0.010 3.990 18 H 0.160 0.840 19 C -0.153 4.153 20 C -0.182 4.182 21 C 0.301 3.699 22 O -0.466 6.466 23 N -0.364 5.364 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.106 0.894 30 H 0.258 0.742 31 H 0.098 0.902 32 H 0.157 0.843 33 H 0.134 0.866 34 H 0.157 0.843 35 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 4.545 -11.965 -4.321 13.509 hybrid contribution -0.158 1.204 0.636 1.371 sum 4.388 -10.761 -3.685 12.191 Atomic orbital electron populations 1.21515 0.79398 1.01094 1.00831 1.43752 1.06743 1.04659 1.61970 1.19675 1.00711 0.85676 1.41236 0.90232 1.26131 0.96945 1.03130 0.94151 1.70065 1.19672 1.30948 1.32620 0.84956 0.78506 0.76836 0.78224 1.19133 1.20235 1.19641 1.20585 0.88051 0.85901 0.83303 1.90461 1.15039 1.87367 1.57661 1.20835 0.91746 0.84056 1.03900 1.45673 1.11686 1.04228 1.73638 1.21230 0.89790 0.84150 0.75632 1.90727 1.18365 1.85121 1.51241 1.21811 0.94042 0.82043 1.01121 0.84006 1.22738 1.05115 0.95550 0.91905 1.22422 1.01221 0.95840 0.98691 1.21616 0.81129 0.83651 0.83483 1.90730 1.59930 1.21687 1.74272 1.46115 1.48450 1.08641 1.33189 0.93634 0.92011 0.91555 0.91611 0.88612 0.89389 0.74236 0.90176 0.84307 0.86606 0.84344 0.75048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.80 8.44 127.77 1.08 5.88 16 2 N -0.45 -21.84 3.01 -658.89 -1.98 -23.83 16 3 C -0.35 -18.43 9.24 84.04 0.78 -17.65 16 4 H 0.08 4.47 7.45 -2.91 -0.02 4.45 16 5 C 0.00 -0.06 5.04 84.93 0.43 0.37 16 6 N -0.89 -45.67 10.83 21.66 0.23 -45.43 16 7 Si 0.99 40.28 29.57 68.60 2.03 42.31 16 8 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 9 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 10 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 11 C 0.43 19.01 7.70 87.66 0.67 19.68 16 12 O -0.62 -30.10 15.38 -3.06 -0.05 -30.15 16 13 C 0.12 4.10 4.76 85.63 0.41 4.51 16 14 N -0.70 -19.03 5.53 -466.79 -2.58 -21.61 16 15 C 0.51 12.73 7.02 87.66 0.62 13.35 16 16 O -0.58 -19.10 16.58 -3.03 -0.05 -19.15 16 17 C 0.12 1.93 3.92 44.70 0.18 2.10 16 18 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 19 C -0.12 -1.29 6.68 31.65 0.21 -1.07 16 20 C -0.14 -1.70 6.86 30.59 0.21 -1.49 16 21 C 0.51 11.48 8.43 87.90 0.74 12.22 16 22 O -0.59 -18.64 18.03 -3.02 -0.05 -18.70 16 23 N -0.71 -14.59 5.47 -442.99 -2.42 -17.01 16 24 H 0.05 1.97 7.83 -2.39 -0.02 1.95 16 25 H 0.06 2.76 6.80 -2.38 -0.02 2.74 16 26 H 0.07 2.23 6.61 -2.38 -0.02 2.21 16 27 H 0.27 13.15 8.31 -92.70 -0.77 12.38 16 28 H 0.10 3.01 7.41 -2.38 -0.02 2.99 16 29 H 0.09 2.96 8.11 -2.39 -0.02 2.94 16 30 H 0.42 10.66 7.44 -92.71 -0.69 9.97 16 31 H 0.08 1.10 7.91 -2.39 -0.02 1.09 16 32 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.12 1.23 8.14 -2.39 -0.02 1.22 16 34 H 0.14 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.41 8.95 8.96 -92.71 -0.83 8.12 16 Total: -1.00 -72.95 303.19 0.07 -72.88 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -0.38 Total: 22.79 kcal Atomic # 6 Polarization: 32.58 SS G_CDS: 5.32 Total: 37.90 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -6.75 Total: -107.88 kcal Atomic # 8 Polarization: -67.85 SS G_CDS: -0.15 Total: -68.00 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Total: -72.95 0.07 -72.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187517087.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.528 kcal (2) G-P(sol) polarization free energy of solvation -72.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds