Wall clock time and date at job start Mon Mar 30 2020 00:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46896 * 111.00105 * 2 1 4 4 C 1.46903 * 111.00101 * 123.95350 * 2 1 3 5 5 C 1.53001 * 109.47290 * 170.00013 * 4 2 1 6 6 C 1.53001 * 109.47021 * 179.97438 * 5 4 2 7 7 H 1.09005 * 109.47028 * 55.00023 * 6 5 4 8 8 O 1.42899 * 109.46972 * 294.99857 * 6 5 4 9 9 C 1.42905 * 113.99778 * 150.00330 * 8 6 5 10 10 C 1.50699 * 109.46972 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99963 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99865 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00518 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99987 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46922 * 90.00621 * 14 12 10 16 16 H 1.48500 * 109.47411 * 210.00442 * 14 12 10 17 17 H 1.48494 * 109.47378 * 330.00637 * 14 12 10 18 18 C 1.50695 * 109.46883 * 174.99846 * 6 5 4 19 19 C 1.33395 * 125.20244 * 264.71495 * 18 6 5 20 20 C 1.38426 * 114.91967 * 179.86141 * 19 18 6 21 21 C 1.33393 * 114.92033 * 0.43231 * 20 19 18 22 22 S 1.75885 * 109.59551 * 359.77136 * 21 20 19 23 23 H 1.08996 * 109.46841 * 296.04912 * 1 2 3 24 24 H 1.09002 * 109.47251 * 56.04523 * 1 2 3 25 25 H 1.09003 * 109.47173 * 176.04889 * 1 2 3 26 26 H 1.09003 * 109.47015 * 183.95568 * 3 2 1 27 27 H 1.09006 * 109.46873 * 303.94725 * 3 2 1 28 28 H 1.08996 * 109.47680 * 63.95094 * 3 2 1 29 29 H 1.09001 * 109.47261 * 49.99791 * 4 2 1 30 30 H 1.09001 * 109.46857 * 289.99976 * 4 2 1 31 31 H 1.09001 * 109.47149 * 59.99710 * 5 4 2 32 32 H 1.09000 * 109.46617 * 299.99812 * 5 4 2 33 33 H 1.09004 * 109.47054 * 299.99711 * 9 8 6 34 34 H 1.09000 * 109.47187 * 59.99767 * 9 8 6 35 35 H 0.96992 * 120.00316 * 179.97438 * 13 12 10 36 36 H 1.08001 * 122.54001 * 0.02562 * 19 18 6 37 37 H 1.07999 * 122.54093 * 180.20415 * 20 19 18 38 38 H 1.08000 * 125.20316 * 179.74576 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5045 -0.9554 0.9704 6 6 4.0528 -1.7526 2.1555 7 1 3.5046 -2.6903 2.2475 8 8 3.8980 -0.9907 3.3545 9 6 3.7196 -1.7851 4.5290 10 6 3.5680 -0.8835 5.7270 11 1 3.6038 0.1888 5.6038 12 6 3.3825 -1.4277 6.9801 13 7 3.3383 -2.7335 7.1302 14 14 3.1952 -0.3101 8.4652 15 1 1.7593 0.0115 8.6647 16 1 3.7206 -0.9981 9.6719 17 1 3.9569 0.9445 8.2398 18 6 5.5140 -2.0449 1.9312 19 6 6.0012 -3.1687 1.4029 20 6 7.3803 -3.2107 1.2912 21 6 8.0136 -2.1247 1.7371 22 16 6.8386 -0.9596 2.3331 23 1 -0.3633 0.4513 0.9233 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3634 -1.0252 -0.0708 26 1 3.0828 1.3431 -0.0709 27 1 1.5898 1.9162 -0.8526 28 1 1.7044 1.8724 0.9232 29 1 1.5090 -1.7407 1.1757 30 1 1.7975 -0.2247 2.0628 31 1 3.9909 0.0193 0.9323 32 1 3.7023 -1.4966 0.0452 33 1 2.8253 -2.3988 4.4201 34 1 4.5878 -2.4295 4.6671 35 1 3.2081 -3.1163 8.0118 36 1 5.3674 -3.9830 1.0840 37 1 7.9040 -4.0600 0.8779 38 1 9.0843 -1.9828 1.7332 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205609833.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:38 Heat of formation + Delta-G solvation = -15.648400 kcal Electronic energy + Delta-G solvation = -18472.432145 eV Core-core repulsion = 15634.658198 eV Total energy + Delta-G solvation = -2837.773947 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.42630 -37.23138 -36.38165 -33.04469 -31.87080 -29.29993 -27.50327 -27.29681 -25.55218 -23.53650 -22.45088 -21.61978 -20.45251 -18.96012 -17.09702 -16.42388 -15.91011 -15.29471 -15.03572 -14.97552 -14.66965 -14.30330 -13.74020 -13.39019 -13.04809 -12.58570 -12.43019 -12.29119 -12.04553 -11.94176 -11.79120 -11.63754 -11.49959 -11.06938 -10.92603 -10.77962 -10.72414 -10.42485 -10.20323 -10.03418 -9.15146 -8.99060 -8.31020 -8.28615 -8.21871 -8.04681 -6.13021 -4.14957 1.36754 2.05517 2.48464 3.06664 3.28030 3.33473 3.38545 4.05366 4.32137 4.79935 5.04371 5.22242 5.23346 5.26460 5.33041 5.48143 5.55179 5.61492 5.71132 5.76457 5.78409 5.86536 5.88674 5.94003 5.98032 6.12516 6.32416 6.41351 6.49056 6.61458 6.78925 7.07054 7.13047 7.13970 7.40288 7.76019 8.11133 8.48857 8.96793 9.49665 10.98348 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.010728 B = 0.007126 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.426242 B = 3928.120694 C = 5857.195342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.550 5.550 3 C 0.021 3.979 4 C 0.055 3.945 5 C -0.101 4.101 6 C 0.154 3.846 7 H 0.071 0.929 8 O -0.379 6.379 9 C 0.196 3.804 10 C -0.514 4.514 11 H 0.066 0.934 12 C 0.058 3.942 13 N -0.897 5.897 14 Si 0.905 3.095 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.271 1.271 18 C -0.176 4.176 19 C -0.153 4.153 20 C -0.134 4.134 21 C -0.240 4.240 22 S 0.144 5.856 23 H 0.026 0.974 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.005 0.995 34 H 0.007 0.993 35 H 0.264 0.736 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.838 2.276 -14.194 14.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.274 5.274 3 C -0.127 4.127 4 C -0.073 4.073 5 C -0.139 4.139 6 C 0.093 3.907 7 H 0.088 0.912 8 O -0.299 6.299 9 C 0.122 3.878 10 C -0.552 4.552 11 H 0.084 0.916 12 C -0.143 4.143 13 N -0.536 5.536 14 Si 0.732 3.268 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.196 1.196 18 C -0.294 4.294 19 C -0.183 4.183 20 C -0.166 4.166 21 C -0.376 4.376 22 S 0.408 5.592 23 H 0.045 0.955 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.023 0.977 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.087 3.561 -13.825 14.428 hybrid contribution -0.352 -1.032 1.078 1.533 sum 1.735 2.529 -12.747 13.111 Atomic orbital electron populations 1.22354 0.87685 1.02055 1.00293 1.62035 1.07595 1.13945 1.43787 1.22421 1.01178 0.88898 1.00210 1.22114 0.95072 0.98294 0.91787 1.21628 0.94807 1.01028 0.96475 1.20328 0.86985 0.95577 0.87849 0.91170 1.87945 1.92641 1.34493 1.14792 1.20267 0.95074 0.91374 0.81072 1.21008 1.49755 0.93850 0.90593 0.91608 1.24924 0.95205 0.95261 0.98951 1.69957 1.49746 1.10143 1.23741 0.86377 0.78403 0.80502 0.81478 1.20492 1.21034 1.19603 1.25443 1.00412 0.98289 1.05295 1.20027 0.95091 0.98395 1.04812 1.20040 0.93905 0.99088 1.03533 1.25694 1.03223 0.99834 1.08879 1.84467 0.95386 1.19302 1.60039 0.95545 0.91751 0.91499 0.91060 0.91945 0.95363 0.91045 0.92956 0.91183 0.90484 0.97681 0.97514 0.92638 0.84767 0.85024 0.82532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.57 60.06 0.57 0.86 16 2 N -0.55 -7.42 5.02 -251.26 -1.26 -8.68 16 3 C 0.02 0.26 9.32 60.06 0.56 0.82 16 4 C 0.05 0.84 4.85 -3.82 -0.02 0.82 16 5 C -0.10 -1.57 4.83 -26.73 -0.13 -1.70 16 6 C 0.15 2.84 2.54 -27.88 -0.07 2.77 16 7 H 0.07 1.29 7.78 -51.93 -0.40 0.89 16 8 O -0.38 -8.74 9.23 -35.23 -0.33 -9.07 16 9 C 0.20 5.27 5.49 36.01 0.20 5.47 16 10 C -0.51 -14.91 9.43 -34.44 -0.32 -15.23 16 11 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 13 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 14 Si 0.91 21.79 29.54 -169.99 -5.02 16.77 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 C -0.18 -3.11 5.47 -36.00 -0.20 -3.30 16 19 C -0.15 -2.40 10.05 -41.21 -0.41 -2.82 16 20 C -0.13 -1.91 10.18 -41.21 -0.42 -2.33 16 21 C -0.24 -3.46 11.23 29.04 0.33 -3.13 16 22 S 0.14 2.44 23.03 -107.50 -2.48 -0.03 16 23 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 25 H 0.07 0.73 8.12 -51.93 -0.42 0.30 16 26 H 0.07 0.88 6.47 -51.93 -0.34 0.54 16 27 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 1.06 8.06 -51.93 -0.42 0.64 16 30 H 0.05 0.93 7.80 -51.93 -0.41 0.52 16 31 H 0.07 1.11 6.55 -51.93 -0.34 0.77 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.01 0.15 8.09 -51.93 -0.42 -0.27 16 34 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.16 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 331.82 15.07 5.00 5.00 Total: -1.00 -30.73 331.82 -9.45 -40.18 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -6.09 Total: -1.98 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -0.01 Total: -16.20 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: -0.52 Total: -34.67 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.33 Total: -9.07 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.48 Total: -0.03 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.73 -9.45 -40.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205609833.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.537 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds