Wall clock time and date at job start Mon Mar 30 2020 00:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46896 * 111.00105 * 2 1 4 4 C 1.46903 * 111.00101 * 123.95350 * 2 1 3 5 5 C 1.53001 * 109.47290 * 170.00013 * 4 2 1 6 6 C 1.53001 * 109.47021 * 179.97438 * 5 4 2 7 7 H 1.09005 * 109.47028 * 55.00023 * 6 5 4 8 8 O 1.42899 * 109.46972 * 294.99857 * 6 5 4 9 9 C 1.42905 * 113.99778 * 150.00330 * 8 6 5 10 10 C 1.50699 * 109.46972 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99963 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99865 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00518 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99987 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46922 * 90.00621 * 14 12 10 16 16 H 1.48500 * 109.47411 * 210.00442 * 14 12 10 17 17 H 1.48494 * 109.47378 * 330.00637 * 14 12 10 18 18 C 1.50695 * 109.46883 * 174.99846 * 6 5 4 19 19 C 1.33395 * 125.20244 * 264.71495 * 18 6 5 20 20 C 1.38426 * 114.91967 * 179.86141 * 19 18 6 21 21 C 1.33393 * 114.92033 * 0.43231 * 20 19 18 22 22 S 1.75885 * 109.59551 * 359.77136 * 21 20 19 23 23 H 1.08996 * 109.46841 * 296.04912 * 1 2 3 24 24 H 1.09002 * 109.47251 * 56.04523 * 1 2 3 25 25 H 1.09003 * 109.47173 * 176.04889 * 1 2 3 26 26 H 1.09003 * 109.47015 * 183.95568 * 3 2 1 27 27 H 1.09006 * 109.46873 * 303.94725 * 3 2 1 28 28 H 1.08996 * 109.47680 * 63.95094 * 3 2 1 29 29 H 1.09001 * 109.47261 * 49.99791 * 4 2 1 30 30 H 1.09001 * 109.46857 * 289.99976 * 4 2 1 31 31 H 1.09001 * 109.47149 * 59.99710 * 5 4 2 32 32 H 1.09000 * 109.46617 * 299.99812 * 5 4 2 33 33 H 1.09004 * 109.47054 * 299.99711 * 9 8 6 34 34 H 1.09000 * 109.47187 * 59.99767 * 9 8 6 35 35 H 0.96992 * 120.00316 * 179.97438 * 13 12 10 36 36 H 1.08001 * 122.54001 * 0.02562 * 19 18 6 37 37 H 1.07999 * 122.54093 * 180.20415 * 20 19 18 38 38 H 1.08000 * 125.20316 * 179.74576 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5045 -0.9554 0.9704 6 6 4.0528 -1.7526 2.1555 7 1 3.5046 -2.6903 2.2475 8 8 3.8980 -0.9907 3.3545 9 6 3.7196 -1.7851 4.5290 10 6 3.5680 -0.8835 5.7270 11 1 3.6038 0.1888 5.6038 12 6 3.3825 -1.4277 6.9801 13 7 3.3383 -2.7335 7.1302 14 14 3.1952 -0.3101 8.4652 15 1 1.7593 0.0115 8.6647 16 1 3.7206 -0.9981 9.6719 17 1 3.9569 0.9445 8.2398 18 6 5.5140 -2.0449 1.9312 19 6 6.0012 -3.1687 1.4029 20 6 7.3803 -3.2107 1.2912 21 6 8.0136 -2.1247 1.7371 22 16 6.8386 -0.9596 2.3331 23 1 -0.3633 0.4513 0.9233 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3634 -1.0252 -0.0708 26 1 3.0828 1.3431 -0.0709 27 1 1.5898 1.9162 -0.8526 28 1 1.7044 1.8724 0.9232 29 1 1.5090 -1.7407 1.1757 30 1 1.7975 -0.2247 2.0628 31 1 3.9909 0.0193 0.9323 32 1 3.7023 -1.4966 0.0452 33 1 2.8253 -2.3988 4.4201 34 1 4.5878 -2.4295 4.6671 35 1 3.2081 -3.1163 8.0118 36 1 5.3674 -3.9830 1.0840 37 1 7.9040 -4.0600 0.8779 38 1 9.0843 -1.9828 1.7332 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205609833.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:37 Heat of formation + Delta-G solvation = -34.800569 kcal Electronic energy + Delta-G solvation = -18473.262646 eV Core-core repulsion = 15634.658198 eV Total energy + Delta-G solvation = -2838.604448 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.86213 -38.36841 -37.89453 -35.08766 -33.45801 -30.51825 -29.38206 -28.48409 -26.88652 -24.72895 -24.53467 -22.91194 -21.72417 -20.18833 -18.75332 -18.34788 -17.43071 -16.70380 -16.47105 -16.29148 -15.96922 -15.75671 -15.38430 -14.92481 -14.40540 -14.08173 -13.70428 -13.56946 -13.49939 -13.25204 -13.17262 -12.89822 -12.80915 -12.64369 -12.55373 -12.36346 -12.19716 -11.97819 -11.71470 -11.51911 -11.27321 -10.95969 -10.33834 -9.55554 -9.36611 -9.34439 -8.33546 -6.45535 0.12911 0.78781 1.25142 1.37027 1.39388 1.51337 1.87994 2.31874 2.91331 3.00362 3.18947 3.72944 4.01326 4.19578 4.25816 4.30896 4.33684 4.41709 4.51293 4.65595 4.70028 4.71621 4.75689 4.78454 4.85048 4.98058 4.99388 5.07534 5.16979 5.20000 5.20999 5.40188 5.52893 5.63023 5.94602 6.00196 6.08590 6.49507 6.78248 7.25799 8.78583 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.010728 B = 0.007126 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.426242 B = 3928.120694 C = 5857.195342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.551 5.551 3 C 0.020 3.980 4 C 0.061 3.939 5 C -0.087 4.087 6 C 0.150 3.850 7 H 0.065 0.935 8 O -0.389 6.389 9 C 0.219 3.781 10 C -0.544 4.544 11 H 0.059 0.941 12 C 0.010 3.990 13 N -0.929 5.929 14 Si 0.977 3.023 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.266 1.266 18 C -0.207 4.207 19 C -0.145 4.145 20 C -0.139 4.139 21 C -0.222 4.222 22 S 0.089 5.911 23 H 0.017 0.983 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.016 0.984 29 H 0.074 0.926 30 H 0.019 0.981 31 H 0.065 0.935 32 H 0.097 0.903 33 H -0.014 1.014 34 H -0.020 1.020 35 H 0.270 0.730 36 H 0.153 0.847 37 H 0.168 0.832 38 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.380 2.266 -15.046 15.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.275 5.275 3 C -0.128 4.128 4 C -0.067 4.067 5 C -0.125 4.125 6 C 0.089 3.911 7 H 0.083 0.917 8 O -0.308 6.308 9 C 0.144 3.856 10 C -0.582 4.582 11 H 0.078 0.922 12 C -0.189 4.189 13 N -0.568 5.568 14 Si 0.800 3.200 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.190 1.190 18 C -0.325 4.325 19 C -0.176 4.176 20 C -0.169 4.169 21 C -0.358 4.358 22 S 0.352 5.648 23 H 0.036 0.964 24 H 0.105 0.895 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.034 0.966 29 H 0.092 0.908 30 H 0.038 0.962 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.003 0.997 34 H -0.002 1.002 35 H 0.079 0.921 36 H 0.170 0.830 37 H 0.185 0.815 38 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 2.624 3.553 -14.706 15.355 hybrid contribution -0.480 -1.098 1.231 1.718 sum 2.144 2.455 -13.475 13.864 Atomic orbital electron populations 1.22452 0.86372 1.02900 1.00841 1.62081 1.08841 1.14364 1.42202 1.22477 1.01189 0.88446 1.00658 1.21987 0.95165 0.98340 0.91212 1.21526 0.94640 1.00534 0.95777 1.20544 0.88336 0.95443 0.86771 0.91664 1.87901 1.92819 1.34857 1.15263 1.19752 0.92775 0.90684 0.82387 1.21329 1.50921 0.93860 0.92083 0.92225 1.25888 0.94135 0.96886 1.02012 1.70063 1.49859 1.11957 1.24908 0.85275 0.78955 0.78456 0.77331 1.19240 1.19884 1.18981 1.25309 0.99719 0.99580 1.07928 1.20414 0.96365 0.97764 1.03012 1.20407 0.93235 1.00094 1.03149 1.26048 1.04056 0.98433 1.07220 1.84593 0.97148 1.21370 1.61650 0.96387 0.89502 0.90847 0.91328 0.89488 0.96575 0.90773 0.96235 0.91665 0.88510 0.99677 1.00176 0.92080 0.82972 0.81463 0.79381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.57 127.69 1.22 1.71 16 2 N -0.55 -14.48 5.02 -948.85 -4.76 -19.24 16 3 C 0.02 0.49 9.32 127.69 1.19 1.68 16 4 C 0.06 1.90 4.85 86.30 0.42 2.32 16 5 C -0.09 -2.72 4.83 30.59 0.15 -2.57 16 6 C 0.15 5.70 2.54 29.85 0.08 5.77 16 7 H 0.07 2.50 7.78 -2.38 -0.02 2.48 16 8 O -0.39 -18.80 9.23 -148.98 -1.38 -20.18 16 9 C 0.22 12.33 5.49 71.24 0.39 12.72 16 10 C -0.54 -32.56 9.43 25.60 0.24 -32.32 16 11 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 12 C 0.01 0.55 5.46 84.65 0.46 1.01 16 13 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 14 Si 0.98 44.76 29.54 68.60 2.03 46.79 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 18 C -0.21 -7.36 5.47 24.59 0.13 -7.23 16 19 C -0.14 -4.34 10.05 21.22 0.21 -4.13 16 20 C -0.14 -3.56 10.18 21.22 0.22 -3.35 16 21 C -0.22 -5.90 11.23 66.72 0.75 -5.15 16 22 S 0.09 3.04 23.03 -56.49 -1.30 1.74 16 23 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 24 H 0.09 1.52 8.12 -2.39 -0.02 1.50 16 25 H 0.07 1.51 8.12 -2.39 -0.02 1.49 16 26 H 0.07 1.67 6.47 -2.39 -0.02 1.65 16 27 H 0.09 1.65 8.12 -2.38 -0.02 1.63 16 28 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.07 2.23 8.06 -2.39 -0.02 2.21 16 30 H 0.02 0.73 7.80 -2.39 -0.02 0.71 16 31 H 0.06 2.10 6.55 -2.39 -0.02 2.09 16 32 H 0.10 2.65 8.14 -2.39 -0.02 2.64 16 33 H -0.01 -0.85 8.09 -2.38 -0.02 -0.87 16 34 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 35 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 36 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 37 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 38 H 0.19 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -67.35 331.82 1.35 -66.00 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 1.01 Total: 10.28 kcal Atomic # 6 Polarization: -34.98 SS G_CDS: 5.46 Total: -29.51 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -4.48 Total: -75.12 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -1.38 Total: -20.18 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -1.30 Total: 1.74 kcal Total: -67.35 1.35 -66.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205609833.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.197 kcal (2) G-P(sol) polarization free energy of solvation -67.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds