Wall clock time and date at job start Mon Mar 30 2020 00:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35998 * 117.00276 * 2 1 4 4 C 1.38633 * 120.05562 * 0.02562 * 3 2 1 5 5 C 1.38214 * 120.03381 * 180.02562 * 4 3 2 6 6 C 1.50706 * 119.91687 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.46577 * 89.99965 * 6 5 4 8 8 C 1.46891 * 111.00304 * 293.95012 * 7 6 5 9 9 C 1.46901 * 110.99644 * 169.99988 * 7 6 5 10 10 C 1.50700 * 109.47327 * 190.00050 * 9 7 6 11 11 H 1.08006 * 120.00051 * 0.02562 * 10 9 7 12 12 C 1.37876 * 120.00184 * 179.97438 * 10 9 7 13 13 N 1.31509 * 120.00072 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99646 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47154 * 90.00546 * 14 12 10 16 16 H 1.48498 * 109.46844 * 209.99801 * 14 12 10 17 17 H 1.48486 * 109.47387 * 330.00107 * 14 12 10 18 18 C 1.38262 * 120.16239 * 0.25271 * 5 4 3 19 19 C 1.38416 * 120.11897 * 359.48763 * 18 5 4 20 20 F 1.35102 * 120.01697 * 180.27801 * 19 18 5 21 21 C 1.38755 * 119.95962 * 0.51228 * 19 18 5 22 22 O 1.36046 * 120.07945 * 179.76551 * 21 19 18 23 23 H 1.08998 * 109.46882 * 299.99733 * 1 2 3 24 24 H 1.08993 * 109.46919 * 59.99903 * 1 2 3 25 25 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 26 26 H 1.07999 * 119.97992 * 0.04133 * 4 3 2 27 27 H 1.09000 * 109.47318 * 209.99473 * 6 5 4 28 28 H 1.09000 * 109.47161 * 330.00103 * 6 5 4 29 29 H 1.09003 * 109.47237 * 60.00538 * 8 7 6 30 30 H 1.08998 * 109.47394 * 179.97438 * 8 7 6 31 31 H 1.09003 * 109.47554 * 300.00530 * 8 7 6 32 32 H 1.09000 * 109.47307 * 309.99860 * 9 7 6 33 33 H 1.08997 * 109.47179 * 70.00271 * 9 7 6 34 34 H 0.97000 * 119.99883 * 180.02562 * 13 12 10 35 35 H 1.08001 * 119.93963 * 179.74663 * 18 5 4 36 36 H 0.96696 * 114.00260 * 269.97772 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2926 2.3752 0.0005 5 6 1.9206 3.6064 0.0000 6 6 1.0985 4.8695 0.0000 7 7 0.8320 5.2801 1.3851 8 6 -0.0275 4.3038 2.0675 9 6 0.2413 6.6243 1.4311 10 6 0.2090 7.1103 2.8573 11 1 0.5896 6.4834 3.6501 12 6 -0.3055 8.3555 3.1498 13 7 -0.7686 9.1191 2.1844 14 14 -0.3462 8.9574 4.9178 15 1 0.9143 9.6805 5.2236 16 1 -1.4998 9.8741 5.1021 17 1 -0.4853 7.7964 5.8329 18 6 3.3012 3.6821 -0.0063 19 6 4.0603 2.5246 -0.0015 20 9 5.4091 2.6010 -0.0020 21 6 3.4350 1.2859 -0.0010 22 8 4.1788 0.1468 -0.0010 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 0.2141 2.3194 0.0016 27 1 1.6461 5.6594 -0.5141 28 1 0.1542 4.6884 -0.5134 29 1 0.4656 3.3317 2.0800 30 1 -0.2086 4.6319 3.0910 31 1 -0.9769 4.2228 1.5381 32 1 0.8417 7.3059 0.8286 33 1 -0.7741 6.5887 1.0364 34 1 -1.1302 9.9953 2.3902 35 1 3.7881 4.6461 -0.0109 36 1 4.3932 -0.1830 -0.8844 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209520926.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:06 Heat of formation + Delta-G solvation = -93.290059 kcal Electronic energy + Delta-G solvation = -20425.884887 eV Core-core repulsion = 17018.530968 eV Total energy + Delta-G solvation = -3407.353918 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.87683 -40.46794 -37.95233 -37.47577 -35.70218 -32.63149 -30.51612 -30.01201 -27.84976 -27.16125 -26.29447 -23.95492 -22.43206 -21.72067 -20.34743 -18.76181 -17.65361 -17.28315 -16.38970 -16.29907 -16.04544 -15.51080 -15.18046 -14.95000 -14.65314 -14.36638 -14.00350 -13.93447 -13.49765 -12.90205 -12.46749 -12.20616 -12.16234 -11.97798 -11.57426 -11.25927 -11.22036 -10.93847 -10.87463 -10.74430 -10.61395 -10.49543 -9.91412 -9.28716 -8.63114 -8.46938 -8.25714 -7.35662 -6.07097 -4.08529 0.99060 1.21139 2.93873 3.30480 3.36457 3.39037 3.42217 3.94762 4.39666 4.40545 4.66752 4.88957 4.96248 5.00561 5.05981 5.15316 5.29057 5.29766 5.33707 5.66361 5.76760 5.90553 6.00557 6.05581 6.12155 6.22717 6.55497 6.61485 6.68546 7.01905 7.19149 7.24672 7.57688 7.73510 7.99378 8.10386 8.46053 8.98921 9.56016 11.03777 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.024968 B = 0.004308 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.183865 B = 6497.280519 C = 7036.152054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.306 6.306 3 C 0.129 3.871 4 C -0.199 4.199 5 C 0.002 3.998 6 C 0.086 3.914 7 N -0.533 5.533 8 C 0.033 3.967 9 C 0.193 3.807 10 C -0.508 4.508 11 H 0.064 0.936 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.899 3.101 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.156 4.156 19 C 0.113 3.887 20 F -0.129 7.129 21 C 0.026 3.974 22 O -0.476 6.476 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.101 0.899 26 H 0.137 0.863 27 H 0.084 0.916 28 H 0.038 0.962 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.011 0.989 32 H 0.032 0.968 33 H -0.007 1.007 34 H 0.262 0.738 35 H 0.145 0.855 36 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.586 -16.191 -8.059 18.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.083 3.917 4 C -0.219 4.219 5 C 0.001 3.999 6 C -0.042 4.042 7 N -0.258 5.258 8 C -0.115 4.115 9 C 0.068 3.932 10 C -0.547 4.547 11 H 0.082 0.918 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.726 3.274 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.175 4.175 19 C 0.093 3.907 20 F -0.108 7.108 21 C -0.020 4.020 22 O -0.285 6.285 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.119 0.881 26 H 0.154 0.846 27 H 0.102 0.898 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.029 0.971 32 H 0.050 0.950 33 H 0.010 0.990 34 H 0.071 0.929 35 H 0.162 0.838 36 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 4.029 -16.119 -7.219 18.115 hybrid contribution -0.823 0.503 0.007 0.965 sum 3.206 -15.616 -7.213 17.497 Atomic orbital electron populations 1.23135 0.78056 1.04047 1.01841 1.86112 1.21494 1.25882 1.88453 1.18990 0.90726 0.85016 0.97000 1.21165 1.00480 0.91114 1.09115 1.19636 0.92898 0.94777 0.92615 1.21109 0.97106 0.93058 0.92895 1.62159 1.47952 1.04711 1.10933 1.22311 0.93576 0.95016 1.00635 1.19776 0.92668 0.82664 0.98085 1.21145 1.39731 1.01108 0.92697 0.91792 1.24978 0.95389 0.96656 0.97506 1.69951 1.41603 1.10485 1.31807 0.86487 0.77565 0.78668 0.84642 1.20562 1.21310 1.19847 1.20938 0.93631 0.97554 1.05385 1.17655 0.77226 0.93012 1.02815 1.91497 1.28541 1.97033 1.93724 1.17427 0.86930 0.85484 1.12183 1.84955 1.71598 1.38905 1.32996 0.92178 0.92453 0.88080 0.84569 0.89752 0.94415 0.93422 0.90500 0.97056 0.95021 0.98952 0.92876 0.83757 0.76345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.77 10.28 -34.28 -0.35 -4.13 16 3 C 0.13 1.74 6.70 -39.13 -0.26 1.48 16 4 C -0.20 -2.67 6.95 -39.44 -0.27 -2.94 16 5 C 0.00 0.03 4.88 -104.62 -0.51 -0.48 16 6 C 0.09 1.45 5.12 -4.97 -0.03 1.43 16 7 N -0.53 -11.11 4.74 -245.83 -1.17 -12.28 16 8 C 0.03 0.63 8.95 60.06 0.54 1.16 16 9 C 0.19 4.86 4.72 -4.98 -0.02 4.84 16 10 C -0.51 -14.03 8.46 -34.44 -0.29 -14.32 16 11 H 0.06 1.76 7.12 -52.48 -0.37 1.39 16 12 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 13 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 14 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 C -0.16 -2.29 9.67 -39.51 -0.38 -2.67 16 19 C 0.11 1.64 7.31 -39.32 -0.29 1.36 16 20 F -0.13 -1.92 17.11 2.25 0.04 -1.88 16 21 C 0.03 0.37 6.72 -39.09 -0.26 0.11 16 22 O -0.48 -6.19 13.15 -34.43 -0.45 -6.64 16 23 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 24 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 25 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.14 1.61 6.27 -52.49 -0.33 1.28 16 27 H 0.08 1.39 7.87 -51.93 -0.41 0.98 16 28 H 0.04 0.60 8.06 -51.93 -0.42 0.18 16 29 H 0.05 0.80 6.16 -51.93 -0.32 0.48 16 30 H 0.08 1.58 6.76 -51.93 -0.35 1.23 16 31 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.03 0.85 7.93 -51.93 -0.41 0.43 16 33 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.14 2.04 8.06 -52.49 -0.42 1.61 16 36 H 0.38 3.07 9.06 45.56 0.41 3.48 16 LS Contribution 309.52 15.07 4.66 4.66 Total: -1.00 -31.63 309.52 -6.26 -37.89 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -3.82 Total: -1.15 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -0.89 Total: -7.37 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: -0.43 Total: -37.79 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -0.81 Total: -10.76 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.63 -6.26 -37.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209520926.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.403 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds