Wall clock time and date at job start Mon Mar 30 2020 01:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99747 * 2 1 4 4 H 1.48503 * 109.47139 * 275.31735 * 3 2 1 5 5 H 1.48493 * 109.47368 * 35.31949 * 3 2 1 6 6 H 1.48503 * 109.46614 * 155.32047 * 3 2 1 7 7 C 1.38817 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99539 * 338.18226 * 7 2 1 9 9 N 1.36932 * 119.99995 * 158.17926 * 7 2 1 10 10 C 1.46503 * 120.00123 * 322.55985 * 9 7 2 11 11 C 1.50698 * 109.47087 * 270.00202 * 10 9 7 12 12 C 1.38237 * 119.99807 * 269.73025 * 11 10 9 13 13 C 1.38241 * 119.99947 * 179.76841 * 12 11 10 14 14 C 1.38232 * 119.99852 * 0.50255 * 13 12 11 15 15 C 1.38241 * 120.00233 * 359.74799 * 14 13 12 16 16 C 1.38232 * 120.00127 * 90.00122 * 11 10 9 17 17 C 1.46500 * 119.99673 * 142.56276 * 9 7 2 18 18 C 1.50701 * 109.47254 * 274.62503 * 17 9 7 19 19 C 1.38395 * 119.99914 * 95.36817 * 18 17 9 20 20 N 1.32126 * 119.99929 * 179.77319 * 19 18 17 21 21 C 1.32151 * 119.99507 * 0.50661 * 20 19 18 22 22 C 1.38345 * 120.00359 * 359.49611 * 21 20 19 23 23 N 1.32122 * 120.00616 * 275.39912 * 18 17 9 24 24 H 0.97000 * 120.00099 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.47112 * 30.00252 * 10 9 7 26 26 H 1.08998 * 109.46622 * 150.00443 * 10 9 7 27 27 H 1.08004 * 120.00194 * 359.97438 * 12 11 10 28 28 H 1.08002 * 120.00133 * 180.22380 * 13 12 11 29 29 H 1.07994 * 120.00300 * 179.72843 * 14 13 12 30 30 H 1.07998 * 120.00306 * 179.97438 * 15 14 13 31 31 H 1.07994 * 120.00216 * 359.97438 * 16 11 10 32 32 H 1.09002 * 109.47173 * 154.62779 * 17 9 7 33 33 H 1.08998 * 109.47636 * 34.62822 * 17 9 7 34 34 H 1.08004 * 119.99917 * 0.02562 * 19 18 17 35 35 H 1.07998 * 119.99709 * 179.76754 * 21 20 19 36 36 H 1.08011 * 119.99601 * 180.27451 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3853 2.1114 -1.3941 5 1 1.5083 2.6176 0.8094 6 1 3.5994 1.4103 0.5846 7 6 2.0103 -1.2022 -0.0005 8 1 1.5283 -2.1041 0.3467 9 7 3.3061 -1.2444 -0.4413 10 6 3.7197 -0.4206 -1.5801 11 6 3.5251 -1.1957 -2.8577 12 6 4.5508 -1.9781 -3.3544 13 6 4.3708 -2.6929 -4.5239 14 6 3.1687 -2.6171 -5.2021 15 6 2.1447 -1.8306 -4.7082 16 6 2.3230 -1.1199 -3.5359 17 6 4.2787 -2.1134 0.2257 18 6 4.8662 -1.3925 1.4116 19 6 4.3330 -1.5876 2.6737 20 7 4.8509 -0.9589 3.7140 21 6 5.8717 -0.1363 3.5478 22 6 6.4047 0.0587 2.2862 23 7 5.8899 -0.5738 1.2464 24 1 -0.4850 0.8400 -0.0004 25 1 3.1166 0.4867 -1.6101 26 1 4.7713 -0.1546 -1.4730 27 1 5.4917 -2.0336 -2.8271 28 1 5.1709 -3.3071 -4.9101 29 1 3.0294 -3.1720 -6.1181 30 1 1.2057 -1.7710 -5.2383 31 1 1.5231 -0.5055 -3.1500 32 1 5.0744 -2.3718 -0.4730 33 1 3.7820 -3.0231 0.5631 34 1 3.4961 -2.2567 2.8088 35 1 6.2927 0.3804 4.3976 36 1 7.2418 0.7277 2.1511 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209787124.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:53 Heat of formation + Delta-G solvation = 100.647311 kcal Electronic energy + Delta-G solvation = -20074.452145 eV Core-core repulsion = 17138.569958 eV Total energy + Delta-G solvation = -2935.882187 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.50923 -38.72846 -36.09545 -33.73560 -32.17137 -31.81122 -30.32633 -30.16694 -26.92279 -25.65289 -24.06388 -23.17721 -21.94538 -21.29740 -20.41718 -17.30339 -16.83338 -16.53428 -16.07127 -15.63228 -15.18536 -14.87682 -14.58495 -14.25409 -13.67525 -13.42639 -12.96543 -12.81443 -12.74803 -12.38810 -12.09249 -11.90243 -11.53625 -11.15101 -10.97094 -10.81000 -10.68004 -10.63331 -10.36425 -9.97754 -9.75818 -8.84434 -8.71217 -8.57861 -8.36489 -8.14692 -7.07705 -6.16847 -3.58011 1.26005 1.62950 1.92441 1.97164 3.19778 3.36956 3.42870 4.11602 4.34067 4.37832 4.55847 4.75370 5.01430 5.07168 5.23149 5.29249 5.37730 5.41219 5.52094 5.63858 5.70157 5.85954 5.92901 5.97334 6.08483 6.21618 6.26893 6.34310 6.50787 6.59422 6.65214 6.86763 6.97386 7.06096 7.33822 7.58281 7.76054 7.85406 8.20373 8.29570 8.76444 9.51018 9.89700 10.97153 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017901 B = 0.007408 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.776076 B = 3778.882311 C = 4678.706867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.046 3.954 3 Si 0.869 3.131 4 H -0.282 1.282 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.269 4.269 8 H 0.085 0.915 9 N -0.579 5.579 10 C 0.169 3.831 11 C -0.077 4.077 12 C -0.117 4.117 13 C -0.130 4.130 14 C -0.136 4.136 15 C -0.125 4.125 16 C -0.091 4.091 17 C 0.194 3.806 18 C 0.082 3.918 19 C 0.064 3.936 20 N -0.444 5.444 21 C 0.020 3.980 22 C 0.042 3.958 23 N -0.439 5.439 24 H 0.266 0.734 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.167 0.833 35 H 0.158 0.842 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.328 -2.550 -2.791 10.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.157 4.157 3 Si 0.699 3.301 4 H -0.210 1.210 5 H -0.229 1.229 6 H -0.193 1.193 7 C -0.398 4.398 8 H 0.103 0.897 9 N -0.298 5.298 10 C 0.044 3.956 11 C -0.080 4.080 12 C -0.136 4.136 13 C -0.148 4.148 14 C -0.155 4.155 15 C -0.143 4.143 16 C -0.110 4.110 17 C 0.066 3.934 18 C -0.062 4.062 19 C -0.097 4.097 20 N -0.159 5.159 21 C -0.140 4.140 22 C -0.118 4.118 23 N -0.156 5.156 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.132 0.868 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.141 0.859 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.184 0.816 35 H 0.175 0.825 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 10.129 -2.460 -2.769 10.785 hybrid contribution 0.286 1.264 0.171 1.308 sum 10.415 -1.196 -2.598 10.801 Atomic orbital electron populations 1.69844 1.05878 1.26976 1.49920 1.25440 0.95017 0.97587 0.97621 0.87062 0.80853 0.84932 0.77223 1.20977 1.22866 1.19332 1.18820 0.85334 0.94469 1.41154 0.89722 1.44167 1.06694 1.50732 1.28247 1.20257 0.98573 0.92874 0.83903 1.20775 0.93447 0.97736 0.96017 1.20991 0.98757 0.97626 0.96180 1.20975 0.97311 1.00272 0.96268 1.20959 0.94139 1.00334 1.00046 1.21101 0.98531 0.97818 0.96874 1.21164 0.97090 0.98780 0.93928 1.20021 0.91817 0.92526 0.89012 1.23728 0.90438 0.94600 0.97393 1.23594 0.98899 0.98176 0.89029 1.68360 1.08244 1.05244 1.34047 1.23493 0.94730 0.97600 0.98137 1.23605 0.99905 0.98249 0.90045 1.68289 1.09493 1.05061 1.32709 0.92425 0.92269 0.92435 0.86824 0.87064 0.87137 0.86846 0.85890 0.91636 0.90821 0.81593 0.82505 0.82515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.97 55.49 0.78 -24.90 16 2 C 0.05 1.25 5.31 -17.43 -0.09 1.15 16 3 Si 0.87 21.91 25.00 -169.99 -4.25 17.66 16 4 H -0.28 -6.91 6.67 56.52 0.38 -6.53 16 5 H -0.30 -7.82 7.11 56.52 0.40 -7.41 16 6 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.27 -6.94 9.92 -15.06 -0.15 -7.09 16 8 H 0.09 2.34 8.06 -52.49 -0.42 1.92 16 9 N -0.58 -12.82 2.06 -175.99 -0.36 -13.19 16 10 C 0.17 3.59 4.60 -5.19 -0.02 3.57 16 11 C -0.08 -1.50 5.46 -104.63 -0.57 -2.08 16 12 C -0.12 -1.96 9.70 -39.58 -0.38 -2.34 16 13 C -0.13 -1.96 10.05 -39.58 -0.40 -2.35 16 14 C -0.14 -2.05 10.05 -39.58 -0.40 -2.45 16 15 C -0.13 -2.10 10.05 -39.58 -0.40 -2.50 16 16 C -0.09 -1.79 9.70 -39.58 -0.38 -2.17 16 17 C 0.19 3.63 6.01 -5.19 -0.03 3.60 16 18 C 0.08 1.55 6.34 -82.41 -0.52 1.02 16 19 C 0.06 1.19 10.86 -17.37 -0.19 1.00 16 20 N -0.44 -7.99 10.50 -13.06 -0.14 -8.13 16 21 C 0.02 0.31 11.22 -17.37 -0.20 0.11 16 22 C 0.04 0.65 11.22 -17.38 -0.20 0.46 16 23 N -0.44 -8.12 10.42 -9.28 -0.10 -8.21 16 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.06 1.39 3.15 -51.93 -0.16 1.23 16 26 H 0.06 1.16 8.01 -51.93 -0.42 0.74 16 27 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 28 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 30 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.12 2.65 8.06 -52.49 -0.42 2.23 16 32 H 0.07 1.12 8.04 -51.93 -0.42 0.71 16 33 H 0.07 1.29 7.98 -51.93 -0.41 0.88 16 34 H 0.17 2.85 8.06 -52.48 -0.42 2.43 16 35 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.16 1.84 8.06 -52.48 -0.42 1.42 16 LS Contribution 311.35 15.07 4.69 4.69 Total: -1.00 -30.53 311.35 -7.69 -38.22 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.38 Total: 3.94 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -3.93 Total: -10.07 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.18 Total: -54.43 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.25 Total: 17.66 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.53 -7.69 -38.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209787124.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.863 kcal (2) G-P(sol) polarization free energy of solvation -30.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds