Wall clock time and date at job start Mon Mar 30 2020 01:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99747 * 2 1 4 4 H 1.48503 * 109.47139 * 275.31735 * 3 2 1 5 5 H 1.48493 * 109.47368 * 35.31949 * 3 2 1 6 6 H 1.48503 * 109.46614 * 155.32047 * 3 2 1 7 7 C 1.38817 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99539 * 338.18226 * 7 2 1 9 9 N 1.36932 * 119.99995 * 158.17926 * 7 2 1 10 10 C 1.46503 * 120.00123 * 322.55985 * 9 7 2 11 11 C 1.50698 * 109.47087 * 270.00202 * 10 9 7 12 12 C 1.38237 * 119.99807 * 269.73025 * 11 10 9 13 13 C 1.38241 * 119.99947 * 179.76841 * 12 11 10 14 14 C 1.38232 * 119.99852 * 0.50255 * 13 12 11 15 15 C 1.38241 * 120.00233 * 359.74799 * 14 13 12 16 16 C 1.38232 * 120.00127 * 90.00122 * 11 10 9 17 17 C 1.46500 * 119.99673 * 142.56276 * 9 7 2 18 18 C 1.50701 * 109.47254 * 274.62503 * 17 9 7 19 19 C 1.38395 * 119.99914 * 95.36817 * 18 17 9 20 20 N 1.32126 * 119.99929 * 179.77319 * 19 18 17 21 21 C 1.32151 * 119.99507 * 0.50661 * 20 19 18 22 22 C 1.38345 * 120.00359 * 359.49611 * 21 20 19 23 23 N 1.32122 * 120.00616 * 275.39912 * 18 17 9 24 24 H 0.97000 * 120.00099 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.47112 * 30.00252 * 10 9 7 26 26 H 1.08998 * 109.46622 * 150.00443 * 10 9 7 27 27 H 1.08004 * 120.00194 * 359.97438 * 12 11 10 28 28 H 1.08002 * 120.00133 * 180.22380 * 13 12 11 29 29 H 1.07994 * 120.00300 * 179.72843 * 14 13 12 30 30 H 1.07998 * 120.00306 * 179.97438 * 15 14 13 31 31 H 1.07994 * 120.00216 * 359.97438 * 16 11 10 32 32 H 1.09002 * 109.47173 * 154.62779 * 17 9 7 33 33 H 1.08998 * 109.47636 * 34.62822 * 17 9 7 34 34 H 1.08004 * 119.99917 * 0.02562 * 19 18 17 35 35 H 1.07998 * 119.99709 * 179.76754 * 21 20 19 36 36 H 1.08011 * 119.99601 * 180.27451 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3853 2.1114 -1.3941 5 1 1.5083 2.6176 0.8094 6 1 3.5994 1.4103 0.5846 7 6 2.0103 -1.2022 -0.0005 8 1 1.5283 -2.1041 0.3467 9 7 3.3061 -1.2444 -0.4413 10 6 3.7197 -0.4206 -1.5801 11 6 3.5251 -1.1957 -2.8577 12 6 4.5508 -1.9781 -3.3544 13 6 4.3708 -2.6929 -4.5239 14 6 3.1687 -2.6171 -5.2021 15 6 2.1447 -1.8306 -4.7082 16 6 2.3230 -1.1199 -3.5359 17 6 4.2787 -2.1134 0.2257 18 6 4.8662 -1.3925 1.4116 19 6 4.3330 -1.5876 2.6737 20 7 4.8509 -0.9589 3.7140 21 6 5.8717 -0.1363 3.5478 22 6 6.4047 0.0587 2.2862 23 7 5.8899 -0.5738 1.2464 24 1 -0.4850 0.8400 -0.0004 25 1 3.1166 0.4867 -1.6101 26 1 4.7713 -0.1546 -1.4730 27 1 5.4917 -2.0336 -2.8271 28 1 5.1709 -3.3071 -4.9101 29 1 3.0294 -3.1720 -6.1181 30 1 1.2057 -1.7710 -5.2383 31 1 1.5231 -0.5055 -3.1500 32 1 5.0744 -2.3718 -0.4730 33 1 3.7820 -3.0231 0.5631 34 1 3.4961 -2.2567 2.8088 35 1 6.2927 0.3804 4.3976 36 1 7.2418 0.7277 2.1511 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209787124.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:53 Heat of formation + Delta-G solvation = 82.020151 kcal Electronic energy + Delta-G solvation = -20075.259879 eV Core-core repulsion = 17138.569958 eV Total energy + Delta-G solvation = -2936.689921 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.85141 -40.10124 -37.72770 -35.13547 -34.00368 -33.28720 -31.66762 -31.62514 -28.43003 -27.38215 -25.41027 -24.73162 -23.28409 -22.75609 -21.97718 -19.02721 -18.31879 -17.86222 -17.51555 -17.22339 -16.65664 -16.45490 -15.95258 -15.71116 -15.20174 -14.94878 -14.67109 -14.34788 -14.13189 -14.06613 -13.42411 -13.33228 -13.21454 -12.80751 -12.58253 -12.35679 -12.23516 -12.04978 -11.88162 -11.82538 -11.54852 -10.76124 -10.12412 -9.97944 -9.67793 -9.51314 -8.90215 -8.27319 -5.63694 -0.04577 0.28204 0.60220 0.64516 1.17519 1.28741 1.36815 2.30618 2.75340 2.92172 3.12684 3.32262 3.47867 3.56572 3.73554 4.02893 4.05202 4.16282 4.28489 4.29939 4.39648 4.44239 4.53868 4.68291 4.70842 4.80864 4.86065 4.89602 4.95877 5.25572 5.29874 5.55894 5.69648 5.73427 5.85094 5.94174 6.14529 6.28046 6.43722 6.85783 6.96294 7.51958 7.95439 8.91461 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017901 B = 0.007408 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.776076 B = 3778.882311 C = 4678.706867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.924 3.076 4 H -0.279 1.279 5 H -0.315 1.315 6 H -0.271 1.271 7 C -0.242 4.242 8 H 0.057 0.943 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.099 4.099 12 C -0.118 4.118 13 C -0.121 4.121 14 C -0.128 4.128 15 C -0.131 4.131 16 C -0.122 4.122 17 C 0.196 3.804 18 C 0.066 3.934 19 C 0.047 3.953 20 N -0.465 5.465 21 C 0.029 3.971 22 C 0.043 3.957 23 N -0.457 5.457 24 H 0.262 0.738 25 H 0.031 0.969 26 H 0.068 0.932 27 H 0.132 0.868 28 H 0.151 0.849 29 H 0.148 0.852 30 H 0.129 0.871 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.166 0.834 35 H 0.201 0.799 36 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.610 -3.182 -3.624 14.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.198 4.198 3 Si 0.755 3.245 4 H -0.207 1.207 5 H -0.244 1.244 6 H -0.196 1.196 7 C -0.372 4.372 8 H 0.075 0.925 9 N -0.309 5.309 10 C 0.048 3.952 11 C -0.102 4.102 12 C -0.136 4.136 13 C -0.139 4.139 14 C -0.146 4.146 15 C -0.149 4.149 16 C -0.141 4.141 17 C 0.070 3.930 18 C -0.076 4.076 19 C -0.112 4.112 20 N -0.180 5.180 21 C -0.131 4.131 22 C -0.118 4.118 23 N -0.173 5.173 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.087 0.913 27 H 0.150 0.850 28 H 0.168 0.832 29 H 0.166 0.834 30 H 0.147 0.853 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.183 0.817 35 H 0.218 0.782 36 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 13.442 -3.122 -3.616 14.266 hybrid contribution -0.531 1.370 0.449 1.536 sum 12.911 -1.752 -3.167 13.409 Atomic orbital electron populations 1.69941 1.07124 1.27074 1.53692 1.25811 0.95293 0.99749 0.98920 0.86180 0.79246 0.82261 0.76824 1.20704 1.24384 1.19569 1.18648 0.86931 0.93011 1.38584 0.92527 1.44160 1.06186 1.51064 1.29520 1.20152 0.98289 0.92043 0.84692 1.20644 0.94477 0.99200 0.95856 1.21186 0.98499 0.96966 0.96970 1.21429 0.98217 0.99261 0.94998 1.21397 0.93256 0.99053 1.00893 1.21316 1.00092 0.97590 0.95904 1.21047 0.96709 1.00349 0.95974 1.20031 0.91602 0.91862 0.89512 1.23518 0.91516 0.95286 0.97294 1.23642 0.99276 0.98895 0.89405 1.68398 1.09448 1.06161 1.33965 1.24271 0.93161 0.95942 0.99714 1.24348 1.00339 0.97711 0.89393 1.68277 1.09544 1.05332 1.34184 0.92878 0.95063 0.91327 0.85033 0.83180 0.83428 0.85346 0.89551 0.89745 0.90291 0.81725 0.78223 0.78321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.04 13.97 21.65 0.30 -56.73 16 2 C 0.00 0.00 5.31 84.86 0.45 0.45 16 3 Si 0.92 47.30 25.00 68.60 1.72 49.01 16 4 H -0.28 -13.93 6.67 99.48 0.66 -13.26 16 5 H -0.31 -16.58 7.11 99.48 0.71 -15.87 16 6 H -0.27 -13.74 7.11 99.48 0.71 -13.03 16 7 C -0.24 -12.95 9.92 84.04 0.83 -12.12 16 8 H 0.06 3.31 8.06 -2.91 -0.02 3.29 16 9 N -0.59 -26.35 2.06 -710.70 -1.46 -27.82 16 10 C 0.17 7.38 4.60 85.63 0.39 7.77 16 11 C -0.10 -3.85 5.46 -19.87 -0.11 -3.96 16 12 C -0.12 -3.65 9.70 22.27 0.22 -3.43 16 13 C -0.12 -3.14 10.05 22.27 0.22 -2.92 16 14 C -0.13 -3.39 10.05 22.27 0.22 -3.17 16 15 C -0.13 -4.26 10.05 22.27 0.22 -4.04 16 16 C -0.12 -4.92 9.70 22.27 0.22 -4.70 16 17 C 0.20 7.25 6.01 85.63 0.51 7.77 16 18 C 0.07 2.42 6.34 42.55 0.27 2.69 16 19 C 0.05 1.73 10.86 84.69 0.92 2.65 16 20 N -0.46 -15.96 10.50 -195.22 -2.05 -18.01 16 21 C 0.03 0.80 11.22 84.67 0.95 1.75 16 22 C 0.04 1.17 11.22 84.67 0.95 2.12 16 23 N -0.46 -15.83 10.42 -183.29 -1.91 -17.74 16 24 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 25 H 0.03 1.51 3.15 -2.39 -0.01 1.50 16 26 H 0.07 2.71 8.01 -2.39 -0.02 2.69 16 27 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 28 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 29 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 30 H 0.13 3.66 8.06 -2.91 -0.02 3.63 16 31 H 0.09 4.03 8.06 -2.91 -0.02 4.01 16 32 H 0.08 2.75 8.04 -2.39 -0.02 2.73 16 33 H 0.08 2.77 7.98 -2.39 -0.02 2.75 16 34 H 0.17 5.81 8.06 -2.91 -0.02 5.79 16 35 H 0.20 3.59 8.06 -2.91 -0.02 3.57 16 36 H 0.20 3.66 8.06 -2.90 -0.02 3.64 16 Total: -1.00 -69.19 311.35 3.90 -65.29 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 1.03 Total: 15.13 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 6.28 Total: -9.14 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -5.12 Total: -120.30 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.72 Total: 49.01 kcal Total: -69.19 3.90 -65.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209787124.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.310 kcal (2) G-P(sol) polarization free energy of solvation -69.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds