Wall clock time and date at job start Mon Mar 30 2020 01:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38316 * 120.77232 * 2 1 4 4 C 1.39060 * 119.16693 * 180.25102 * 3 2 1 5 5 N 1.39289 * 119.61673 * 179.74168 * 4 3 2 6 6 N 1.32353 * 120.75917 * 359.76643 * 4 3 2 7 7 C 1.31955 * 121.69421 * 359.97438 * 6 4 3 8 8 C 1.38693 * 120.75164 * 0.02562 * 7 6 4 9 9 N 1.40055 * 120.40808 * 179.97438 * 8 7 6 10 10 C 1.39690 * 119.99990 * 255.67784 * 9 8 7 11 11 C 1.39364 * 119.95491 * 5.93570 * 10 9 8 12 12 C 1.38466 * 120.42692 * 179.97438 * 11 10 9 13 13 C 1.37698 * 120.32220 * 0.02562 * 12 11 10 14 14 C 1.40754 * 119.90044 * 359.97374 * 13 12 11 15 15 C 1.41409 * 120.20351 * 180.29507 * 14 13 12 16 16 H 1.08011 * 119.99511 * 151.93768 * 15 14 13 17 17 C 1.39919 * 120.00525 * 331.94204 * 15 14 13 18 18 N 1.30834 * 120.00063 * 348.25695 * 17 15 14 19 19 Si 1.86806 * 119.99952 * 168.25668 * 17 15 14 20 20 H 1.48502 * 109.47152 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46863 * 120.00198 * 19 17 15 22 22 H 1.48502 * 109.46719 * 240.00129 * 19 17 15 23 23 C 1.38308 * 119.95621 * 185.91859 * 10 9 8 24 24 H 1.08999 * 109.47025 * 270.22434 * 1 2 3 25 25 H 1.08992 * 109.47489 * 30.23100 * 1 2 3 26 26 H 1.09004 * 109.46410 * 150.23203 * 1 2 3 27 27 H 1.07996 * 120.41220 * 359.96992 * 3 2 1 28 28 H 0.97005 * 119.99751 * 180.02562 * 5 4 3 29 29 H 0.97003 * 120.00626 * 0.02631 * 5 4 3 30 30 H 1.08009 * 119.62161 * 180.02562 * 7 6 4 31 31 H 0.96993 * 120.00025 * 75.67567 * 9 8 7 32 32 H 1.08008 * 119.78562 * 0.02788 * 11 10 9 33 33 H 1.07999 * 119.83986 * 180.02562 * 12 11 10 34 34 H 1.08005 * 120.05108 * 179.97438 * 13 12 11 35 35 H 0.97000 * 119.99838 * 179.97438 * 18 17 15 36 36 H 1.07993 * 120.15914 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2147 1.1884 0.0000 4 6 3.6048 1.1495 -0.0053 5 7 4.3268 2.3406 -0.0108 6 7 4.2495 -0.0064 -0.0057 7 6 3.6068 -1.1588 -0.0006 8 6 2.2204 -1.1975 0.0049 9 7 1.5455 -2.4247 0.0097 10 6 0.9422 -2.8947 -1.1592 11 6 1.1163 -2.2052 -2.3578 12 6 0.5231 -2.6626 -3.5224 13 6 -0.2463 -3.8044 -3.5086 14 6 -0.4312 -4.5115 -2.3057 15 6 -1.2150 -5.6883 -2.2855 16 1 -1.0150 -6.4578 -1.5544 17 6 -2.2496 -5.8560 -3.2124 18 7 -2.6442 -4.8444 -3.9424 19 14 -3.0674 -7.5241 -3.4078 20 1 -2.4430 -8.4941 -2.4726 21 1 -4.5156 -7.4042 -3.1019 22 1 -2.8940 -7.9998 -4.8039 23 6 0.1731 -4.0437 -1.1256 24 1 -0.3633 0.0040 1.0276 25 1 -0.3634 0.8878 -0.5174 26 1 -0.3632 -0.8921 -0.5103 27 1 1.6942 2.1347 -0.0005 28 1 5.2966 2.3199 -0.0149 29 1 3.8599 3.1909 -0.0106 30 1 4.1667 -2.0824 -0.0007 31 1 1.4971 -2.9483 0.8248 32 1 1.7184 -1.3088 -2.3786 33 1 0.6647 -2.1211 -4.4461 34 1 -0.7073 -4.1570 -4.4195 35 1 -3.3612 -4.9608 -4.5853 36 1 0.0373 -4.5788 -0.1975 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209969891.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:54 Heat of formation + Delta-G solvation = 56.222165 kcal Electronic energy + Delta-G solvation = -19431.146767 eV Core-core repulsion = 16493.338161 eV Total energy + Delta-G solvation = -2937.808606 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.23140 -37.82432 -35.71301 -33.87810 -33.27619 -32.66084 -29.75050 -28.87636 -27.70216 -26.32278 -25.16368 -22.92300 -21.49795 -20.80820 -20.13649 -17.49599 -17.35288 -16.81665 -16.41819 -15.50513 -15.06062 -14.90369 -14.37537 -14.04908 -14.00994 -13.24948 -12.86540 -12.77191 -12.59603 -12.40940 -12.12451 -11.73260 -11.47723 -11.32188 -11.09993 -10.69424 -10.55706 -10.33710 -9.84323 -9.72949 -9.31900 -9.18694 -9.15996 -8.74722 -7.63097 -7.36600 -6.66494 -6.28158 -4.32381 1.44600 1.61971 2.85012 3.11309 3.16650 3.19318 3.33093 3.54886 3.98214 4.05239 4.23135 4.74466 4.80342 5.06379 5.28907 5.42225 5.71397 5.79972 5.87786 5.93762 6.14313 6.21424 6.38575 6.55545 6.63628 6.74282 7.01840 7.11412 7.13005 7.30911 7.33087 7.36669 7.47798 7.81556 7.91163 8.14427 8.24784 8.36289 8.49933 8.62657 8.78048 8.99875 9.09510 10.29555 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.043325 B = 0.003981 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.125087 B = 7030.925326 C = 7108.363484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.001 4.001 3 C -0.235 4.235 4 C 0.390 3.610 5 N -0.859 5.859 6 N -0.543 5.543 7 C 0.139 3.861 8 C 0.068 3.932 9 N -0.707 5.707 10 C 0.217 3.783 11 C -0.283 4.283 12 C -0.079 4.079 13 C -0.189 4.189 14 C 0.139 3.861 15 C -0.464 4.464 16 H 0.075 0.925 17 C 0.075 3.925 18 N -0.800 5.800 19 Si 0.908 3.092 20 H -0.262 1.262 21 H -0.276 1.276 22 H -0.273 1.273 23 C -0.278 4.278 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.126 0.874 28 H 0.400 0.600 29 H 0.404 0.596 30 H 0.154 0.846 31 H 0.397 0.603 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.277 0.723 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.561 9.859 6.387 13.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.011 4.011 3 C -0.261 4.261 4 C 0.154 3.846 5 N -0.404 5.404 6 N -0.261 5.261 7 C -0.020 4.020 8 C -0.030 4.030 9 N -0.338 5.338 10 C 0.121 3.879 11 C -0.306 4.306 12 C -0.098 4.098 13 C -0.209 4.209 14 C 0.136 3.864 15 C -0.494 4.494 16 H 0.093 0.907 17 C -0.142 4.142 18 N -0.426 5.426 19 Si 0.733 3.267 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.199 1.199 23 C -0.302 4.302 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.108 0.892 27 H 0.144 0.856 28 H 0.229 0.771 29 H 0.233 0.767 30 H 0.171 0.829 31 H 0.232 0.768 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.135 0.865 35 H 0.088 0.912 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.288 10.004 6.122 13.809 hybrid contribution -1.164 -0.446 0.107 1.251 sum 6.124 9.558 6.229 12.948 Atomic orbital electron populations 1.20816 0.90119 1.04232 1.02262 1.20505 0.96958 0.91902 0.91743 1.21115 0.92544 0.98719 1.13691 1.18301 0.88135 0.86720 0.91484 1.42148 1.09224 1.04222 1.84806 1.67115 1.40348 0.97214 1.21454 1.22775 0.91380 0.94655 0.93182 1.18060 0.91074 0.86662 1.07238 1.41669 1.61464 1.19637 1.11069 1.17451 0.92452 0.93266 0.84708 1.19889 1.13619 1.04509 0.92585 1.20468 0.97260 0.96547 0.95539 1.21260 1.03113 0.97774 0.98801 1.17345 0.88042 0.91247 0.89781 1.19572 1.12919 1.03007 1.13944 0.90653 1.25867 0.96489 0.97752 0.94047 1.69837 1.23392 1.30671 1.18690 0.86277 0.78993 0.82479 0.78998 1.18544 1.20118 1.19856 1.20474 1.11470 1.00247 0.98000 0.91143 0.91761 0.89151 0.85617 0.77124 0.76662 0.82880 0.76782 0.89863 0.89668 0.86502 0.91195 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 9.82 36.01 0.35 -1.41 16 2 C 0.00 -0.02 5.47 -104.16 -0.57 -0.59 16 3 C -0.24 -3.20 9.63 -39.25 -0.38 -3.58 16 4 C 0.39 5.33 7.75 -154.81 -1.20 4.14 16 5 N -0.86 -8.23 9.09 31.16 0.28 -7.94 16 6 N -0.54 -8.38 10.39 -12.23 -0.13 -8.51 16 7 C 0.14 2.19 11.11 -17.33 -0.19 2.00 16 8 C 0.07 1.12 4.55 -83.50 -0.38 0.74 16 9 N -0.71 -12.53 4.93 -8.32 -0.04 -12.57 16 10 C 0.22 4.73 5.21 -83.83 -0.44 4.30 16 11 C -0.28 -6.44 8.78 -39.08 -0.34 -6.79 16 12 C -0.08 -1.90 10.02 -39.69 -0.40 -2.30 16 13 C -0.19 -4.97 8.67 -38.83 -0.34 -5.31 16 14 C 0.14 3.70 5.55 -106.85 -0.59 3.10 16 15 C -0.46 -12.35 9.06 -37.75 -0.34 -12.69 16 16 H 0.08 1.93 7.87 -52.48 -0.41 1.52 16 17 C 0.07 1.89 5.24 -17.35 -0.09 1.80 16 18 N -0.80 -20.86 10.84 55.55 0.60 -20.26 16 19 Si 0.91 18.84 29.58 -169.99 -5.03 13.82 16 20 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 23 C -0.28 -6.70 9.64 -38.67 -0.37 -7.07 16 24 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 26 H 0.09 1.66 5.90 -51.93 -0.31 1.35 16 27 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 28 H 0.40 3.41 8.95 -40.82 -0.37 3.04 16 29 H 0.40 2.75 8.82 -40.82 -0.36 2.39 16 30 H 0.15 2.23 8.06 -52.48 -0.42 1.80 16 31 H 0.40 6.27 8.83 -40.82 -0.36 5.91 16 32 H 0.08 1.84 6.75 -52.48 -0.35 1.49 16 33 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 34 H 0.12 3.19 6.18 -52.48 -0.32 2.87 16 35 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 36 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 306.73 15.07 4.62 4.62 Total: -1.00 -29.15 306.73 -9.12 -38.27 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -4.15 Total: 16.23 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -5.28 Total: -23.65 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.72 Total: -49.29 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.15 -9.12 -38.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209969891.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.490 kcal (2) G-P(sol) polarization free energy of solvation -29.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds