Wall clock time and date at job start Mon Mar 30 2020 01:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38316 * 120.77232 * 2 1 4 4 C 1.39060 * 119.16693 * 180.25102 * 3 2 1 5 5 N 1.39289 * 119.61673 * 179.74168 * 4 3 2 6 6 N 1.32353 * 120.75917 * 359.76643 * 4 3 2 7 7 C 1.31955 * 121.69421 * 359.97438 * 6 4 3 8 8 C 1.38693 * 120.75164 * 0.02562 * 7 6 4 9 9 N 1.40055 * 120.40808 * 179.97438 * 8 7 6 10 10 C 1.39690 * 119.99990 * 255.67784 * 9 8 7 11 11 C 1.39364 * 119.95491 * 5.93570 * 10 9 8 12 12 C 1.38466 * 120.42692 * 179.97438 * 11 10 9 13 13 C 1.37698 * 120.32220 * 0.02562 * 12 11 10 14 14 C 1.40754 * 119.90044 * 359.97374 * 13 12 11 15 15 C 1.41409 * 120.20351 * 180.29507 * 14 13 12 16 16 H 1.08011 * 119.99511 * 151.93768 * 15 14 13 17 17 C 1.39919 * 120.00525 * 331.94204 * 15 14 13 18 18 N 1.30834 * 120.00063 * 348.25695 * 17 15 14 19 19 Si 1.86806 * 119.99952 * 168.25668 * 17 15 14 20 20 H 1.48502 * 109.47152 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46863 * 120.00198 * 19 17 15 22 22 H 1.48502 * 109.46719 * 240.00129 * 19 17 15 23 23 C 1.38308 * 119.95621 * 185.91859 * 10 9 8 24 24 H 1.08999 * 109.47025 * 270.22434 * 1 2 3 25 25 H 1.08992 * 109.47489 * 30.23100 * 1 2 3 26 26 H 1.09004 * 109.46410 * 150.23203 * 1 2 3 27 27 H 1.07996 * 120.41220 * 359.96992 * 3 2 1 28 28 H 0.97005 * 119.99751 * 180.02562 * 5 4 3 29 29 H 0.97003 * 120.00626 * 0.02631 * 5 4 3 30 30 H 1.08009 * 119.62161 * 180.02562 * 7 6 4 31 31 H 0.96993 * 120.00025 * 75.67567 * 9 8 7 32 32 H 1.08008 * 119.78562 * 0.02788 * 11 10 9 33 33 H 1.07999 * 119.83986 * 180.02562 * 12 11 10 34 34 H 1.08005 * 120.05108 * 179.97438 * 13 12 11 35 35 H 0.97000 * 119.99838 * 179.97438 * 18 17 15 36 36 H 1.07993 * 120.15914 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2147 1.1884 0.0000 4 6 3.6048 1.1495 -0.0053 5 7 4.3268 2.3406 -0.0108 6 7 4.2495 -0.0064 -0.0057 7 6 3.6068 -1.1588 -0.0006 8 6 2.2204 -1.1975 0.0049 9 7 1.5455 -2.4247 0.0097 10 6 0.9422 -2.8947 -1.1592 11 6 1.1163 -2.2052 -2.3578 12 6 0.5231 -2.6626 -3.5224 13 6 -0.2463 -3.8044 -3.5086 14 6 -0.4312 -4.5115 -2.3057 15 6 -1.2150 -5.6883 -2.2855 16 1 -1.0150 -6.4578 -1.5544 17 6 -2.2496 -5.8560 -3.2124 18 7 -2.6442 -4.8444 -3.9424 19 14 -3.0674 -7.5241 -3.4078 20 1 -2.4430 -8.4941 -2.4726 21 1 -4.5156 -7.4042 -3.1019 22 1 -2.8940 -7.9998 -4.8039 23 6 0.1731 -4.0437 -1.1256 24 1 -0.3633 0.0040 1.0276 25 1 -0.3634 0.8878 -0.5174 26 1 -0.3632 -0.8921 -0.5103 27 1 1.6942 2.1347 -0.0005 28 1 5.2966 2.3199 -0.0149 29 1 3.8599 3.1909 -0.0106 30 1 4.1667 -2.0824 -0.0007 31 1 1.4971 -2.9483 0.8248 32 1 1.7184 -1.3088 -2.3786 33 1 0.6647 -2.1211 -4.4461 34 1 -0.7073 -4.1570 -4.4195 35 1 -3.3612 -4.9608 -4.5853 36 1 0.0373 -4.5788 -0.1975 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209969891.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:54 Heat of formation + Delta-G solvation = 38.922029 kcal Electronic energy + Delta-G solvation = -19431.896957 eV Core-core repulsion = 16493.338161 eV Total energy + Delta-G solvation = -2938.558796 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.42306 -39.51661 -37.16621 -35.39020 -34.50390 -34.12963 -31.65309 -30.38878 -28.85328 -27.75829 -27.09123 -24.14839 -22.79660 -22.65397 -21.77094 -19.23780 -18.45916 -17.89300 -17.78378 -17.33718 -16.60165 -16.25268 -16.01987 -15.24802 -15.15735 -14.82271 -14.57047 -14.08401 -13.96428 -13.90924 -13.63751 -13.41785 -13.03922 -12.81243 -12.69024 -12.56988 -12.13108 -11.73818 -11.53178 -11.26768 -11.18693 -10.90087 -10.34433 -10.20704 -9.29846 -8.72865 -8.53986 -7.97221 -6.31915 0.30467 0.44015 1.05079 1.33905 1.41472 1.56010 1.58526 2.25316 2.56785 2.82484 2.84387 2.95542 3.70056 3.84992 3.90295 4.23404 4.33953 4.47469 4.57346 4.70636 4.74311 4.83391 4.99722 5.09067 5.14188 5.19017 5.26391 5.42303 5.48278 5.53183 5.67609 5.98347 6.05667 6.21548 6.33084 6.42662 6.56648 6.67347 6.90408 7.03783 7.08926 7.22732 7.38240 8.43260 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.043325 B = 0.003981 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.125087 B = 7030.925326 C = 7108.363484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.010 4.010 3 C -0.232 4.232 4 C 0.389 3.611 5 N -0.840 5.840 6 N -0.559 5.559 7 C 0.137 3.863 8 C 0.038 3.962 9 N -0.693 5.693 10 C 0.238 3.762 11 C -0.282 4.282 12 C -0.080 4.080 13 C -0.220 4.220 14 C 0.113 3.887 15 C -0.500 4.500 16 H 0.073 0.927 17 C 0.033 3.967 18 N -0.831 5.831 19 Si 0.983 3.017 20 H -0.259 1.259 21 H -0.267 1.267 22 H -0.266 1.266 23 C -0.296 4.296 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.053 0.947 27 H 0.156 0.844 28 H 0.408 0.592 29 H 0.420 0.580 30 H 0.159 0.841 31 H 0.405 0.595 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.285 0.715 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.168 11.351 7.167 15.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.019 4.019 3 C -0.257 4.257 4 C 0.151 3.849 5 N -0.385 5.385 6 N -0.278 5.278 7 C -0.021 4.021 8 C -0.059 4.059 9 N -0.323 5.323 10 C 0.139 3.861 11 C -0.305 4.305 12 C -0.099 4.099 13 C -0.240 4.240 14 C 0.110 3.890 15 C -0.530 4.530 16 H 0.091 0.909 17 C -0.180 4.180 18 N -0.458 5.458 19 Si 0.804 3.196 20 H -0.182 1.182 21 H -0.192 1.192 22 H -0.191 1.191 23 C -0.320 4.320 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.072 0.928 27 H 0.174 0.826 28 H 0.238 0.762 29 H 0.252 0.748 30 H 0.176 0.824 31 H 0.242 0.758 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.938 11.567 6.937 15.650 hybrid contribution -1.204 -0.668 -0.051 1.378 sum 6.734 10.899 6.887 14.545 Atomic orbital electron populations 1.20757 0.90021 1.03182 1.03009 1.20615 0.97159 0.92266 0.91893 1.21358 0.92588 0.99219 1.12557 1.18608 0.88683 0.87310 0.90275 1.42148 1.09715 1.03692 1.82969 1.67172 1.40581 0.97623 1.22459 1.22824 0.91100 0.95316 0.92893 1.18172 0.91458 0.86250 1.10063 1.41522 1.60488 1.20296 1.10040 1.17401 0.90895 0.91928 0.85903 1.19981 1.13347 1.04725 0.92433 1.20686 0.96457 0.95858 0.96876 1.21148 1.05217 0.99453 0.98226 1.17681 0.88761 0.91849 0.90728 1.19828 1.14287 1.03560 1.15345 0.90858 1.26723 0.96621 1.01531 0.93161 1.69908 1.23989 1.32688 1.19180 0.85156 0.78010 0.77372 0.79098 1.18235 1.19168 1.19082 1.20576 1.12366 1.01401 0.97632 0.89593 0.90023 0.92824 0.82643 0.76219 0.74789 0.82380 0.75789 0.88829 0.87947 0.88417 0.90496 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.21 9.82 71.24 0.70 -2.51 16 2 C -0.01 -0.29 5.47 -19.57 -0.11 -0.39 16 3 C -0.23 -5.56 9.63 22.49 0.22 -5.34 16 4 C 0.39 9.46 7.75 132.96 1.03 10.49 16 5 N -0.84 -13.04 9.09 -55.32 -0.50 -13.54 16 6 N -0.56 -16.05 10.39 -192.60 -2.00 -18.05 16 7 C 0.14 4.14 11.11 84.78 0.94 5.08 16 8 C 0.04 1.22 4.55 38.21 0.17 1.40 16 9 N -0.69 -24.19 4.93 -180.23 -0.89 -25.07 16 10 C 0.24 10.39 5.21 38.18 0.20 10.59 16 11 C -0.28 -12.79 8.78 22.60 0.20 -12.59 16 12 C -0.08 -3.89 10.02 22.20 0.22 -3.67 16 13 C -0.22 -12.01 8.67 22.76 0.20 -11.81 16 14 C 0.11 6.23 5.55 -21.31 -0.12 6.11 16 15 C -0.50 -27.57 9.06 23.46 0.21 -27.35 16 16 H 0.07 3.90 7.87 -2.90 -0.02 3.88 16 17 C 0.03 1.72 5.24 85.25 0.45 2.16 16 18 N -0.83 -44.61 10.84 21.82 0.24 -44.37 16 19 Si 0.98 39.13 29.58 68.60 2.03 41.16 16 20 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 21 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 22 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 23 C -0.30 -14.60 9.64 22.86 0.22 -14.38 16 24 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.08 1.99 8.10 -2.39 -0.02 1.97 16 26 H 0.05 1.94 5.90 -2.38 -0.01 1.92 16 27 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 28 H 0.41 5.56 8.95 -92.70 -0.83 4.73 16 29 H 0.42 3.99 8.82 -92.71 -0.82 3.17 16 30 H 0.16 4.44 8.06 -2.91 -0.02 4.42 16 31 H 0.41 12.61 8.83 -92.71 -0.82 11.79 16 32 H 0.09 4.04 6.75 -2.91 -0.02 4.02 16 33 H 0.10 4.50 8.06 -2.91 -0.02 4.47 16 34 H 0.10 5.62 6.18 -2.91 -0.02 5.60 16 35 H 0.28 13.80 8.30 -92.71 -0.77 13.03 16 36 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -64.15 306.73 2.09 -62.06 By element: Atomic # 1 Polarization: 41.36 SS G_CDS: -1.32 Total: 40.04 kcal Atomic # 6 Polarization: -46.75 SS G_CDS: 4.53 Total: -42.22 kcal Atomic # 7 Polarization: -97.88 SS G_CDS: -3.15 Total: -101.03 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -64.15 2.09 -62.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209969891.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.981 kcal (2) G-P(sol) polarization free energy of solvation -64.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds