Wall clock time and date at job start Mon Mar 30 2020 01:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38264 * 120.78450 * 2 1 4 4 C 1.39093 * 119.18336 * 180.29409 * 3 2 1 5 5 N 1.39223 * 119.61879 * 179.70055 * 4 3 2 6 6 N 1.32381 * 120.76416 * 359.72888 * 4 3 2 7 7 C 1.31924 * 121.70294 * 359.97438 * 6 4 3 8 8 C 1.38780 * 120.73880 * 0.02562 * 7 6 4 9 9 N 1.39843 * 120.40904 * 180.02562 * 8 7 6 10 10 C 1.38612 * 120.00482 * 336.49213 * 9 8 7 11 11 C 1.38838 * 120.29622 * 336.34319 * 10 9 8 12 12 C 1.38099 * 120.01878 * 179.97438 * 11 10 9 13 13 C 1.38936 * 120.63640 * 0.02903 * 12 11 10 14 14 C 1.36424 * 120.61263 * 359.97438 * 13 12 11 15 15 C 1.40744 * 119.95567 * 359.97349 * 14 13 12 16 16 C 1.41000 * 120.31296 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99904 * 152.88079 * 16 15 14 18 18 C 1.39888 * 120.00001 * 332.87274 * 16 15 14 19 19 N 1.30900 * 120.00051 * 347.87947 * 18 16 15 20 20 Si 1.86798 * 120.00109 * 167.87450 * 18 16 15 21 21 H 1.48496 * 109.46836 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47033 * 120.00164 * 20 18 16 23 23 H 1.48495 * 109.47463 * 240.00494 * 20 18 16 24 24 H 1.09001 * 109.47340 * 270.24601 * 1 2 3 25 25 H 1.09003 * 109.46473 * 30.24521 * 1 2 3 26 26 H 1.09000 * 109.47406 * 150.24219 * 1 2 3 27 27 H 1.08004 * 120.40927 * 0.02562 * 3 2 1 28 28 H 0.97003 * 120.00040 * 180.02562 * 5 4 3 29 29 H 0.96996 * 120.00032 * 0.02739 * 5 4 3 30 30 H 1.07997 * 119.62852 * 179.97438 * 7 6 4 31 31 H 0.97002 * 119.99940 * 156.49249 * 9 8 7 32 32 H 1.08006 * 119.99498 * 0.26643 * 11 10 9 33 33 H 1.07999 * 119.68006 * 179.97438 * 12 11 10 34 34 H 1.07996 * 119.69888 * 179.97438 * 13 12 11 35 35 H 1.07998 * 120.02074 * 180.02562 * 14 13 12 36 36 H 0.97004 * 120.00261 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2146 1.1878 0.0000 4 6 3.6050 1.1490 -0.0062 5 7 4.3266 2.3396 -0.0126 6 7 4.2501 -0.0070 -0.0067 7 6 3.6079 -1.1594 -0.0009 8 6 2.2206 -1.1982 0.0055 9 7 1.5469 -2.4236 0.0122 10 6 2.1753 -3.5628 -0.4660 11 6 3.2210 -3.4573 -1.3731 12 6 3.8434 -4.5960 -1.8455 13 6 3.4334 -5.8543 -1.4223 14 6 2.4086 -5.9880 -0.5318 15 6 1.7571 -4.8444 -0.0332 16 6 0.6967 -4.9738 0.8871 17 1 0.4883 -4.1775 1.5863 18 6 -0.0854 -6.1336 0.8943 19 7 0.0048 -6.9900 -0.0915 20 14 -1.2584 -6.4602 2.3109 21 1 -1.1734 -5.3475 3.2905 22 1 -2.6464 -6.5572 1.7919 23 1 -0.8885 -7.7352 2.9761 24 1 -0.3634 0.0044 1.0276 25 1 -0.3632 0.8878 -0.5177 26 1 -0.3634 -0.8921 -0.5101 27 1 1.6942 2.1342 0.0004 28 1 5.2964 2.3189 -0.0174 29 1 3.8596 3.1897 -0.0123 30 1 4.1679 -2.0828 -0.0019 31 1 0.6397 -2.4765 0.3516 32 1 3.5511 -2.4843 -1.7059 33 1 4.6560 -4.5077 -2.5513 34 1 3.9306 -6.7347 -1.8018 35 1 2.0980 -6.9707 -0.2090 36 1 -0.5373 -7.7944 -0.0863 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209970637.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:56 Heat of formation + Delta-G solvation = 59.278095 kcal Electronic energy + Delta-G solvation = -19740.186593 eV Core-core repulsion = 16802.510502 eV Total energy + Delta-G solvation = -2937.676091 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.10127 -37.99985 -35.55983 -33.71682 -33.25725 -33.03691 -29.83561 -28.55560 -27.59799 -26.90261 -25.19442 -22.68241 -21.70062 -20.56138 -20.10467 -17.60317 -17.10341 -16.59296 -16.35324 -15.91043 -15.05551 -14.47872 -14.34389 -14.07605 -13.80266 -13.12555 -12.88108 -12.80077 -12.63824 -12.42200 -12.21523 -11.88255 -11.53378 -11.36378 -11.16783 -11.06946 -10.66264 -10.43122 -9.85318 -9.64936 -9.34732 -9.25874 -9.07285 -8.87067 -7.51016 -7.43172 -6.78618 -6.13645 -4.31823 1.65119 1.92153 2.75245 3.04871 3.07590 3.09360 3.17639 3.85743 3.90162 4.33053 4.36946 4.63410 5.04195 5.17459 5.43112 5.53912 5.63983 5.76746 5.79744 6.02673 6.15954 6.19587 6.36455 6.39709 6.48225 6.64714 6.88483 6.98731 7.10720 7.19663 7.39850 7.60262 7.63724 7.72796 7.79768 8.07604 8.12343 8.33511 8.53989 8.66503 8.72438 8.85975 8.97265 10.18694 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020857 B = 0.005763 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.159278 B = 4857.568547 C = 5886.642913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.079 4.079 3 C -0.200 4.200 4 C 0.341 3.659 5 N -0.867 5.867 6 N -0.515 5.515 7 C 0.087 3.913 8 C 0.112 3.888 9 N -0.652 5.652 10 C 0.058 3.942 11 C -0.145 4.145 12 C -0.204 4.204 13 C -0.130 4.130 14 C -0.136 4.136 15 C 0.085 3.915 16 C -0.463 4.463 17 H 0.074 0.926 18 C 0.075 3.925 19 N -0.800 5.800 20 Si 0.907 3.093 21 H -0.262 1.262 22 H -0.275 1.275 23 H -0.273 1.273 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.122 0.878 28 H 0.397 0.603 29 H 0.400 0.600 30 H 0.166 0.834 31 H 0.405 0.595 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.123 0.877 36 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.808 11.031 0.892 11.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.092 4.092 3 C -0.226 4.226 4 C 0.105 3.895 5 N -0.413 5.413 6 N -0.232 5.232 7 C -0.075 4.075 8 C 0.006 3.994 9 N -0.273 5.273 10 C -0.039 4.039 11 C -0.166 4.166 12 C -0.224 4.224 13 C -0.149 4.149 14 C -0.156 4.156 15 C 0.080 3.920 16 C -0.494 4.494 17 H 0.093 0.907 18 C -0.142 4.142 19 N -0.426 5.426 20 Si 0.732 3.268 21 H -0.186 1.186 22 H -0.201 1.201 23 H -0.198 1.198 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.140 0.860 28 H 0.225 0.775 29 H 0.228 0.772 30 H 0.183 0.817 31 H 0.242 0.758 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.141 0.859 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.623 10.677 0.765 10.826 hybrid contribution -1.634 0.067 0.646 1.758 sum -0.011 10.743 1.410 10.835 Atomic orbital electron populations 1.20639 0.90802 1.02948 1.02202 1.19633 0.96042 0.91264 1.02213 1.20865 0.92591 0.97919 1.11191 1.18126 0.88051 0.86693 0.96659 1.41938 1.08818 1.03962 1.86603 1.67060 1.40296 0.97116 1.18724 1.22522 0.90448 0.95145 0.99341 1.18520 0.92724 0.86417 1.01757 1.41492 1.16441 1.03211 1.66172 1.17794 1.00147 0.86094 0.99834 1.20464 0.99485 0.97413 0.99261 1.20224 1.03720 0.92485 1.05985 1.20424 0.98769 0.95540 1.00193 1.20978 0.95624 0.99100 0.99886 1.17356 0.93075 0.89018 0.92513 1.19284 1.12013 1.02079 1.16013 0.90749 1.25821 0.97210 0.95277 0.95849 1.69827 1.34929 1.09690 1.28130 0.86272 0.79653 0.79339 0.81518 1.18584 1.20071 1.19788 0.91248 0.91554 0.91089 0.86024 0.77501 0.77188 0.81718 0.75827 0.88273 0.89219 0.89427 0.85886 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 9.53 36.00 0.34 -1.10 16 2 C -0.08 -1.27 5.93 -104.16 -0.62 -1.89 16 3 C -0.20 -2.93 9.63 -39.25 -0.38 -3.31 16 4 C 0.34 5.29 7.75 -154.84 -1.20 4.09 16 5 N -0.87 -9.81 9.08 31.16 0.28 -9.52 16 6 N -0.51 -9.32 10.38 -12.22 -0.13 -9.45 16 7 C 0.09 1.67 8.72 -17.31 -0.15 1.52 16 8 C 0.11 2.10 6.20 -83.55 -0.52 1.58 16 9 N -0.65 -13.32 4.90 -7.92 -0.04 -13.36 16 10 C 0.06 1.34 6.24 -83.30 -0.52 0.82 16 11 C -0.15 -3.23 7.54 -39.41 -0.30 -3.53 16 12 C -0.20 -4.52 10.03 -39.37 -0.40 -4.91 16 13 C -0.13 -3.00 9.96 -39.98 -0.40 -3.40 16 14 C -0.14 -3.42 8.61 -39.29 -0.34 -3.76 16 15 C 0.08 2.14 5.58 -106.63 -0.59 1.55 16 16 C -0.46 -11.57 8.36 -37.92 -0.32 -11.88 16 17 H 0.07 1.79 7.15 -52.49 -0.38 1.41 16 18 C 0.08 1.81 5.24 -17.33 -0.09 1.72 16 19 N -0.80 -19.99 10.80 55.55 0.60 -19.39 16 20 Si 0.91 18.15 29.58 -169.99 -5.03 13.12 16 21 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 26 H 0.07 1.01 7.08 -51.93 -0.37 0.64 16 27 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 28 H 0.40 4.14 8.95 -40.82 -0.37 3.78 16 29 H 0.40 3.31 8.82 -40.82 -0.36 2.95 16 30 H 0.17 3.33 5.74 -52.49 -0.30 3.03 16 31 H 0.40 7.99 6.29 -40.82 -0.26 7.73 16 32 H 0.10 2.10 5.73 -52.48 -0.30 1.80 16 33 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.12 3.21 6.14 -52.49 -0.32 2.89 16 36 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 LS Contribution 300.00 15.07 4.52 4.52 Total: -1.00 -27.58 300.00 -9.16 -36.74 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -3.90 Total: 19.84 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -5.47 Total: -22.50 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.72 Total: -51.72 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.58 -9.16 -36.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209970637.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.018 kcal (2) G-P(sol) polarization free energy of solvation -27.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds