Wall clock time and date at job start Mon Mar 30 2020 01:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38264 * 120.78450 * 2 1 4 4 C 1.39093 * 119.18336 * 180.29409 * 3 2 1 5 5 N 1.39223 * 119.61879 * 179.70055 * 4 3 2 6 6 N 1.32381 * 120.76416 * 359.72888 * 4 3 2 7 7 C 1.31924 * 121.70294 * 359.97438 * 6 4 3 8 8 C 1.38780 * 120.73880 * 0.02562 * 7 6 4 9 9 N 1.39843 * 120.40904 * 180.02562 * 8 7 6 10 10 C 1.38612 * 120.00482 * 336.49213 * 9 8 7 11 11 C 1.38838 * 120.29622 * 336.34319 * 10 9 8 12 12 C 1.38099 * 120.01878 * 179.97438 * 11 10 9 13 13 C 1.38936 * 120.63640 * 0.02903 * 12 11 10 14 14 C 1.36424 * 120.61263 * 359.97438 * 13 12 11 15 15 C 1.40744 * 119.95567 * 359.97349 * 14 13 12 16 16 C 1.41000 * 120.31296 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99904 * 152.88079 * 16 15 14 18 18 C 1.39888 * 120.00001 * 332.87274 * 16 15 14 19 19 N 1.30900 * 120.00051 * 347.87947 * 18 16 15 20 20 Si 1.86798 * 120.00109 * 167.87450 * 18 16 15 21 21 H 1.48496 * 109.46836 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47033 * 120.00164 * 20 18 16 23 23 H 1.48495 * 109.47463 * 240.00494 * 20 18 16 24 24 H 1.09001 * 109.47340 * 270.24601 * 1 2 3 25 25 H 1.09003 * 109.46473 * 30.24521 * 1 2 3 26 26 H 1.09000 * 109.47406 * 150.24219 * 1 2 3 27 27 H 1.08004 * 120.40927 * 0.02562 * 3 2 1 28 28 H 0.97003 * 120.00040 * 180.02562 * 5 4 3 29 29 H 0.96996 * 120.00032 * 0.02739 * 5 4 3 30 30 H 1.07997 * 119.62852 * 179.97438 * 7 6 4 31 31 H 0.97002 * 119.99940 * 156.49249 * 9 8 7 32 32 H 1.08006 * 119.99498 * 0.26643 * 11 10 9 33 33 H 1.07999 * 119.68006 * 179.97438 * 12 11 10 34 34 H 1.07996 * 119.69888 * 179.97438 * 13 12 11 35 35 H 1.07998 * 120.02074 * 180.02562 * 14 13 12 36 36 H 0.97004 * 120.00261 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2146 1.1878 0.0000 4 6 3.6050 1.1490 -0.0062 5 7 4.3266 2.3396 -0.0126 6 7 4.2501 -0.0070 -0.0067 7 6 3.6079 -1.1594 -0.0009 8 6 2.2206 -1.1982 0.0055 9 7 1.5469 -2.4236 0.0122 10 6 2.1753 -3.5628 -0.4660 11 6 3.2210 -3.4573 -1.3731 12 6 3.8434 -4.5960 -1.8455 13 6 3.4334 -5.8543 -1.4223 14 6 2.4086 -5.9880 -0.5318 15 6 1.7571 -4.8444 -0.0332 16 6 0.6967 -4.9738 0.8871 17 1 0.4883 -4.1775 1.5863 18 6 -0.0854 -6.1336 0.8943 19 7 0.0048 -6.9900 -0.0915 20 14 -1.2584 -6.4602 2.3109 21 1 -1.1734 -5.3475 3.2905 22 1 -2.6464 -6.5572 1.7919 23 1 -0.8885 -7.7352 2.9761 24 1 -0.3634 0.0044 1.0276 25 1 -0.3632 0.8878 -0.5177 26 1 -0.3634 -0.8921 -0.5101 27 1 1.6942 2.1342 0.0004 28 1 5.2964 2.3189 -0.0174 29 1 3.8596 3.1897 -0.0123 30 1 4.1679 -2.0828 -0.0019 31 1 0.6397 -2.4765 0.3516 32 1 3.5511 -2.4843 -1.7059 33 1 4.6560 -4.5077 -2.5513 34 1 3.9306 -6.7347 -1.8018 35 1 2.0980 -6.9707 -0.2090 36 1 -0.5373 -7.7944 -0.0863 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209970637.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:56 Heat of formation + Delta-G solvation = 43.498704 kcal Electronic energy + Delta-G solvation = -19740.870839 eV Core-core repulsion = 16802.510502 eV Total energy + Delta-G solvation = -2938.360337 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.46328 -39.65491 -36.99636 -35.49009 -34.51703 -34.37756 -31.60951 -30.18016 -28.77915 -28.33101 -26.99723 -24.07350 -23.24854 -22.12487 -21.71664 -19.24645 -18.61889 -17.83517 -17.79662 -17.41061 -16.66908 -15.98315 -15.76090 -15.40819 -15.18500 -14.73382 -14.47141 -14.16185 -13.99617 -13.86754 -13.58315 -13.46716 -13.02791 -12.89926 -12.78202 -12.62754 -12.19279 -12.05250 -11.51682 -11.42908 -11.04999 -10.79315 -10.39204 -10.16548 -9.28222 -8.99797 -8.55080 -7.68783 -6.16882 0.35420 0.54561 1.01634 1.32880 1.41007 1.52542 1.54109 2.23400 2.67892 2.80091 2.94697 3.06024 3.77111 3.82475 3.93809 4.23027 4.36095 4.48361 4.58903 4.62893 4.76613 4.80706 4.84849 4.99859 5.13055 5.15236 5.28329 5.38164 5.42732 5.56983 5.69306 5.87579 5.96780 6.23968 6.31612 6.54096 6.59671 6.68399 6.84030 6.93984 7.12269 7.18600 7.53432 8.42473 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020857 B = 0.005763 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.159278 B = 4857.568547 C = 5886.642913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.071 4.071 3 C -0.195 4.195 4 C 0.343 3.657 5 N -0.847 5.847 6 N -0.540 5.540 7 C 0.071 3.929 8 C 0.082 3.918 9 N -0.656 5.656 10 C 0.064 3.936 11 C -0.152 4.152 12 C -0.202 4.202 13 C -0.140 4.140 14 C -0.159 4.159 15 C 0.050 3.950 16 C -0.487 4.487 17 H 0.074 0.926 18 C 0.035 3.965 19 N -0.833 5.833 20 Si 0.978 3.022 21 H -0.259 1.259 22 H -0.268 1.268 23 H -0.270 1.270 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.056 0.944 27 H 0.163 0.837 28 H 0.403 0.597 29 H 0.418 0.582 30 H 0.144 0.856 31 H 0.405 0.595 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.219 13.836 1.173 13.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.083 4.083 3 C -0.220 4.220 4 C 0.105 3.895 5 N -0.395 5.395 6 N -0.258 5.258 7 C -0.088 4.088 8 C -0.022 4.022 9 N -0.278 5.278 10 C -0.033 4.033 11 C -0.174 4.174 12 C -0.221 4.221 13 C -0.159 4.159 14 C -0.180 4.180 15 C 0.046 3.954 16 C -0.518 4.518 17 H 0.093 0.907 18 C -0.178 4.178 19 N -0.460 5.460 20 Si 0.800 3.200 21 H -0.183 1.183 22 H -0.193 1.193 23 H -0.195 1.195 24 H 0.102 0.898 25 H 0.114 0.886 26 H 0.075 0.925 27 H 0.180 0.820 28 H 0.232 0.768 29 H 0.250 0.750 30 H 0.162 0.838 31 H 0.242 0.758 32 H 0.127 0.873 33 H 0.134 0.866 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.058 13.554 1.043 13.635 hybrid contribution -1.327 -0.520 0.506 1.512 sum -0.269 13.034 1.549 13.128 Atomic orbital electron populations 1.20716 0.88733 1.03689 1.03349 1.20043 0.97620 0.90658 0.99956 1.21273 0.92281 0.98984 1.09447 1.18544 0.89041 0.87060 0.94864 1.41934 1.09271 1.03436 1.84862 1.67030 1.40810 0.97595 1.20376 1.22226 0.90652 0.95136 1.00800 1.18683 0.92793 0.86643 1.04116 1.41365 1.16430 1.03178 1.66833 1.17938 0.99764 0.86539 0.99087 1.20630 0.99519 0.98024 0.99222 1.20557 1.03874 0.91989 1.05716 1.20635 0.98487 0.96843 0.99963 1.20958 0.97009 0.98534 1.01470 1.17681 0.94064 0.90002 0.93633 1.19453 1.12735 1.03008 1.16588 0.90747 1.26608 0.98573 0.94690 0.97978 1.69899 1.36103 1.10290 1.29756 0.85206 0.77564 0.79007 0.78207 1.18295 1.19299 1.19538 0.89823 0.88641 0.92473 0.81980 0.76756 0.75043 0.83841 0.75824 0.87292 0.86594 0.87463 0.87622 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.57 9.53 71.24 0.68 -1.89 16 2 C -0.07 -2.12 5.93 -19.56 -0.12 -2.24 16 3 C -0.19 -4.96 9.63 22.48 0.22 -4.75 16 4 C 0.34 9.69 7.75 132.98 1.03 10.72 16 5 N -0.85 -16.07 9.08 -55.33 -0.50 -16.58 16 6 N -0.54 -18.98 10.38 -192.57 -2.00 -20.98 16 7 C 0.07 2.76 8.72 84.81 0.74 3.50 16 8 C 0.08 3.05 6.20 38.29 0.24 3.29 16 9 N -0.66 -27.34 4.90 -178.96 -0.88 -28.22 16 10 C 0.06 3.08 6.24 39.04 0.24 3.33 16 11 C -0.15 -6.92 7.54 22.38 0.17 -6.75 16 12 C -0.20 -8.96 10.03 22.40 0.22 -8.73 16 13 C -0.14 -6.60 9.96 22.01 0.22 -6.38 16 14 C -0.16 -8.38 8.61 22.46 0.19 -8.19 16 15 C 0.05 2.66 5.58 -21.17 -0.12 2.55 16 16 C -0.49 -25.21 8.36 23.35 0.20 -25.01 16 17 H 0.07 3.70 7.15 -2.91 -0.02 3.67 16 18 C 0.03 1.72 5.24 85.23 0.45 2.16 16 19 N -0.83 -43.10 10.80 21.82 0.24 -42.87 16 20 Si 0.98 37.79 29.58 68.60 2.03 39.82 16 21 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 22 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 23 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 24 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.09 1.71 8.10 -2.39 -0.02 1.69 16 26 H 0.06 1.54 7.08 -2.39 -0.02 1.52 16 27 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 28 H 0.40 7.14 8.95 -92.71 -0.83 6.31 16 29 H 0.42 5.02 8.82 -92.71 -0.82 4.20 16 30 H 0.14 6.03 5.74 -2.91 -0.02 6.02 16 31 H 0.40 16.35 6.29 -92.71 -0.58 15.77 16 32 H 0.11 4.68 5.73 -2.91 -0.02 4.66 16 33 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 34 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 35 H 0.11 5.83 6.14 -2.91 -0.02 5.81 16 36 H 0.28 13.39 8.30 -92.71 -0.77 12.62 16 Total: -1.00 -61.52 300.00 2.17 -59.36 By element: Atomic # 1 Polarization: 48.93 SS G_CDS: -1.08 Total: 47.85 kcal Atomic # 6 Polarization: -42.75 SS G_CDS: 4.36 Total: -38.39 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -3.14 Total: -108.63 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.82 kcal Total: -61.52 2.17 -59.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209970637.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.855 kcal (2) G-P(sol) polarization free energy of solvation -61.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds